CmaCh01G004180 (gene) Cucurbita maxima (Rimu)

NameCmaCh01G004180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr01 : 2105034 .. 2105408 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATTCCTCAAACTCCGGAGCCGTAATGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGATGCTGAGCGGAAGTCATTGCAGCGTTGCTTCTCCAACTTCTTCCAGTTATGGCAACATCACCGTGGCTGCTGCAGCATCGATGTGGTGCGATGGCCGTGTCGAAGAATGCGTCACACGAGAAGGCGAAGGCGAGTCGGCATTCCCAAGCTTGCTAACCTCTACACCTAAGTTTATCAGTTTTCCGACAGGAAATCGGAATAAACCTGTGTGTGAGCGACCAGGAGATTATAAAAGCTGTTTCAACGCAAGGCGTACAAACACCAAGAACGACAATTGTGGCACATATAGTCGCGCCTGTCGAAAGTAA

mRNA sequence

ATGGGACATTCCTCAAACTCCGGAGCCGTAATGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGATGCTGAGCGGAAGTCATTGCAGCGTTGCTTCTCCAACTTCTTCCAGTTATGGCAACATCACCGTGGCTGCTGCAGCATCGATGTGGTGCGATGGCCGTGTCGAAGAATGCGTCACACGAGAAGGCGAAGGCGAGTCGGCATTCCCAAGCTTGCTAACCTCTACACCTAAGTTTATCAGTTTTCCGACAGGAAATCGGAATAAACCTGTGTGTGAGCGACCAGGAGATTATAAAAGCTGTTTCAACGCAAGGCGTACAAACACCAAGAACGACAATTGTGGCACATATAGTCGCGCCTGTCGAAAGTAA

Coding sequence (CDS)

ATGGGACATTCCTCAAACTCCGGAGCCGTAATGGCGGCGGCGGCGGCAATGGGCGTCTTCATTTTGATGCTGAGCGGAAGTCATTGCAGCGTTGCTTCTCCAACTTCTTCCAGTTATGGCAACATCACCGTGGCTGCTGCAGCATCGATGTGGTGCGATGGCCGTGTCGAAGAATGCGTCACACGAGAAGGCGAAGGCGAGTCGGCATTCCCAAGCTTGCTAACCTCTACACCTAAGTTTATCAGTTTTCCGACAGGAAATCGGAATAAACCTGTGTGTGAGCGACCAGGAGATTATAAAAGCTGTTTCAACGCAAGGCGTACAAACACCAAGAACGACAATTGTGGCACATATAGTCGCGCCTGTCGAAAGTAA

Protein sequence

MGHSSNSGAVMAAAAAMGVFILMLSGSHCSVASPTSSSYGNITVAAAASMWCDGRVEECVTREGEGESAFPSLLTSTPKFISFPTGNRNKPVCERPGDYKSCFNARRTNTKNDNCGTYSRACRK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G004180.1CmaCh01G004180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 72..123
score: 6.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G004180CmoCh01G004470Cucurbita moschata (Rifu)cmacmoB468
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G004180Cucurbita pepo (Zucchini)cmacpeB491
CmaCh01G004180Cucurbita pepo (Zucchini)cmacpeB476
CmaCh01G004180Cucurbita pepo (Zucchini)cmacpeB495
CmaCh01G004180Bottle gourd (USVL1VR-Ls)cmalsiB416
CmaCh01G004180Bottle gourd (USVL1VR-Ls)cmalsiB446
CmaCh01G004180Bottle gourd (USVL1VR-Ls)cmalsiB448
CmaCh01G004180Cucumber (Gy14) v2cgybcmaB107
CmaCh01G004180Cucumber (Gy14) v2cgybcmaB517
CmaCh01G004180Melon (DHL92) v3.6.1cmamedB454
CmaCh01G004180Melon (DHL92) v3.6.1cmamedB468
CmaCh01G004180Melon (DHL92) v3.6.1cmamedB502
CmaCh01G004180Silver-seed gourdcarcmaB0835
CmaCh01G004180Cucumber (Chinese Long) v3cmacucB0516
CmaCh01G004180Cucumber (Chinese Long) v3cmacucB0568
CmaCh01G004180Watermelon (97103) v2cmawmbB471
CmaCh01G004180Watermelon (97103) v2cmawmbB491
CmaCh01G004180Watermelon (97103) v2cmawmbB492
CmaCh01G004180Wax gourdcmawgoB0563
CmaCh01G004180Wax gourdcmawgoB0596
CmaCh01G004180Wax gourdcmawgoB0633
CmaCh01G004180Cucurbita maxima (Rimu)cmacmaB110
CmaCh01G004180Cucurbita maxima (Rimu)cmacmaB223
CmaCh01G004180Cucurbita maxima (Rimu)cmacmaB256
CmaCh01G004180Cucumber (Gy14) v1cgycmaB0272
CmaCh01G004180Cucumber (Gy14) v1cgycmaB0495
CmaCh01G004180Cucurbita moschata (Rifu)cmacmoB447
CmaCh01G004180Cucurbita moschata (Rifu)cmacmoB463
CmaCh01G004180Wild cucumber (PI 183967)cmacpiB433
CmaCh01G004180Wild cucumber (PI 183967)cmacpiB479
CmaCh01G004180Wild cucumber (PI 183967)cmacpiB485
CmaCh01G004180Cucumber (Chinese Long) v2cmacuB430
CmaCh01G004180Cucumber (Chinese Long) v2cmacuB476
CmaCh01G004180Cucumber (Chinese Long) v2cmacuB482
CmaCh01G004180Melon (DHL92) v3.5.1cmameB384
CmaCh01G004180Melon (DHL92) v3.5.1cmameB394
CmaCh01G004180Melon (DHL92) v3.5.1cmameB408
CmaCh01G004180Melon (DHL92) v3.5.1cmameB435
CmaCh01G004180Watermelon (Charleston Gray)cmawcgB406
CmaCh01G004180Watermelon (Charleston Gray)cmawcgB424
CmaCh01G004180Watermelon (Charleston Gray)cmawcgB425
CmaCh01G004180Watermelon (97103) v1cmawmB431
CmaCh01G004180Watermelon (97103) v1cmawmB452
CmaCh01G004180Watermelon (97103) v1cmawmB465
CmaCh01G004180Watermelon (97103) v1cmawmB469