CmoCh01G004140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G004140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane 33
Location	Cmo_Chr01 : 2020854 .. 2021054 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGATTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGCTACATCGTCGGTTCTTTCTCTGATCTGTAG

mRNA sequence

ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGATTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGCTACATCGTCGGTTCTTTCTCTGATCTGTAG

Coding sequence (CDS)

ATGGGGGAAATCAGCGAAGAAACTCAGAGGCTTAAGCGAATTGCGGCGGCGACTTACGACTACGACAACGACCCCCGATGGGCCGATTACTGGTCCAACATTCTCATTCCTCCCAACTTGGTTTCTCGCTCCGACGTCACCGATCACTTCAAACGAAAATTCTACCAGCGCTACATCGTCGGTTCTTTCTCTGATCTGTAG

Homology

[Close]

BLAST of CmoCh01G004140 vs. TrEMBL
Match: A0A0B0N363_GOSAR (Transmembrane 33 OS=Gossypium arboreum GN=F383_35964 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-22
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E+ Q+LKRIAAA YDY+NDPRWADYWSNILIPP+L SRSDV DHFKRKFYQRYI
Sbjct: 1  MGEEREDPQKLKRIAAAAYDYENDPRWADYWSNILIPPHLASRSDVVDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. TrEMBL
Match: A0A0D2NC32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G203600 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.4e-22
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E+ Q+LKRIAAA YDY+NDPRWADYWSNILIPP+L SRSDV DHFKRKFYQRYI
Sbjct: 1  MGEEREDPQKLKRIAAAAYDYENDPRWADYWSNILIPPHLASRSDVVDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. TrEMBL
Match: W9RU36_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009130 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-22
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E+ Q+LKRIAAA YDYDNDPRW+DYWSN+L+PP+L SRSDV DHFKRKFYQRYI
Sbjct: 1  MGEEREDPQKLKRIAAAAYDYDNDPRWSDYWSNVLVPPHLASRSDVQDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. TrEMBL
Match: A0A067EUX1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018799mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E++Q++KRIAAA YDYDNDPRWADYWSNILIPP++ +RSDV DH+KRKFYQRYI
Sbjct: 1  MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. TrEMBL
Match: A0A067EUS1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018799mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E++Q++KRIAAA YDYDNDPRWADYWSNILIPP++ +RSDV DH+KRKFYQRYI
Sbjct: 1  MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. TAIR10
Match: AT3G02420.1 (AT3G02420.1 unknown protein)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-22
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          M E  E++QRLK+IAAA +DY+ND RWADYWSNILIPP++ SR +V DHFKRKFYQRYI
Sbjct: 1  MAEGGEDSQRLKKIAAAAFDYENDARWADYWSNILIPPHMASRPEVVDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: gi|823126220|ref|XP_012487960.1| (PREDICTED: transmembrane protein 33 homolog [Gossypium raimondii])

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-22
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E+ Q+LKRIAAA YDY+NDPRWADYWSNILIPP+L SRSDV DHFKRKFYQRYI
Sbjct: 1  MGEEREDPQKLKRIAAAAYDYENDPRWADYWSNILIPPHLASRSDVVDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: gi|728829390|gb|KHG08833.1| (Transmembrane 33 [Gossypium arboreum])

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-22
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E+ Q+LKRIAAA YDY+NDPRWADYWSNILIPP+L SRSDV DHFKRKFYQRYI
Sbjct: 1  MGEEREDPQKLKRIAAAAYDYENDPRWADYWSNILIPPHLASRSDVVDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: gi|703103801|ref|XP_010097824.1| (hypothetical protein L484_009130 [Morus notabilis])

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-22
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E+ Q+LKRIAAA YDYDNDPRW+DYWSN+L+PP+L SRSDV DHFKRKFYQRYI
Sbjct: 1  MGEEREDPQKLKRIAAAAYDYDNDPRWSDYWSNVLVPPHLASRSDVQDHFKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: gi|641839984|gb|KDO58907.1| (hypothetical protein CISIN_1g018799mg [Citrus sinensis])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E++Q++KRIAAA YDYDNDPRWADYWSNILIPP++ +RSDV DH+KRKFYQRYI
Sbjct: 1  MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYI 59

[Close]

BLAST of CmoCh01G004140 vs. NCBI nr
Match: gi|568857513|ref|XP_006482310.1| (PREDICTED: transmembrane protein 33 homolog [Citrus sinensis])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-21
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1


Query: 1  MGEISEETQRLKRIAAATYDYDNDPRWADYWSNILIPPNLVSRSDVTDHFKRKFYQRYI 60
          MGE  E++Q++KRIAAA YDYDNDPRWADYWSNILIPP++ +RSDV DH+KRKFYQRYI
Sbjct: 1  MGEEREDSQKIKRIAAAAYDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYI 59

The following BLAST results are available for this feature:

BLAST of CmoCh01G004140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G004140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0N363_GOSAR	3.4e-22	83.05	Transmembrane 33 OS=Gossypium arboreum GN=F383_35964 PE=4 SV=1	[more]
A0A0D2NC32_GOSRA	3.4e-22	83.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G203600 PE=4 SV=1	[more]
W9RU36_9ROSA	5.9e-22	79.66	Uncharacterized protein OS=Morus notabilis GN=L484_009130 PE=4 SV=1	[more]
A0A067EUX1_CITSI	1.0e-21	77.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018799mg PE=4 SV=1	[more]
A0A067EUS1_CITSI	1.0e-21	77.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018799mg PE=4 SV=1	[more]

BLAST of CmoCh01G004140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02420.1	2.4e-22	72.88	unknown protein	[more]

BLAST of CmoCh01G004140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823126220\|ref\|XP_012487960.1\|	4.9e-22	83.05	PREDICTED: transmembrane protein 33 homolog [Gossypium raimondii]	[more]
gi\|728829390\|gb\|KHG08833.1\|	4.9e-22	83.05	Transmembrane 33 [Gossypium arboreum]	[more]
gi\|703103801\|ref\|XP_010097824.1\|	8.4e-22	79.66	hypothetical protein L484_009130 [Morus notabilis]	[more]
gi\|641839984\|gb\|KDO58907.1\|	1.4e-21	77.97	hypothetical protein CISIN_1g018799mg [Citrus sinensis]	[more]
gi\|568857513\|ref\|XP_006482310.1\|	1.4e-21	77.97	PREDICTED: transmembrane protein 33 homolog [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G004140.1	CmoCh01G004140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 1..59 score: 4.7
None	No IPR available	PANTHER	PTHR30603:SF18	SUBFAMILY NOT NAMED	coord: 1..59 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G004140	Cla007110	Watermelon (97103) v1	cmowmB431
CmoCh01G004140	ClCG05G012000	Watermelon (Charleston Gray)	cmowcgB406
CmoCh01G004140	Lsi05G003960	Bottle gourd (USVL1VR-Ls)	cmolsiB430
CmoCh01G004140	Cp4.1LG02g17110	Cucurbita pepo (Zucchini)	cmocpeB449
CmoCh01G004140	Cla97C05G093920	Watermelon (97103) v2	cmowmbB454
CmoCh01G004140	Bhi01G001448	Wax gourd	cmowgoB0559
CmoCh01G004140	Carg07483	Silver-seed gourd	carcmoB1033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G004140	Cucumber (Chinese Long) v3	cmocucB0532
CmoCh01G004140	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh01G004140	Cucumber (Gy14) v1	cgycmoB0010
CmoCh01G004140	Cucurbita maxima (Rimu)	cmacmoB257
CmoCh01G004140	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G004140	Wild cucumber (PI 183967)	cmocpiB446
CmoCh01G004140	Cucumber (Chinese Long) v2	cmocuB442
CmoCh01G004140	Melon (DHL92) v3.5.1	cmomeB421
CmoCh01G004140	Cucurbita pepo (Zucchini)	cmocpeB453
CmoCh01G004140	Cucumber (Gy14) v2	cgybcmoB339
CmoCh01G004140	Melon (DHL92) v3.6.1	cmomedB484
CmoCh01G004140	Silver-seed gourd	carcmoB0651