CmoCh00G000930 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh00G000930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	Cmo_Chr00 : 17523483 .. 17527912 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCGTTGTCGGTCGGTACCCCGGCAGGGGTAGACCTAGTTACGAAAGATAGAGTAAGGGACGGACAAGTGGTAATAGCTGGACAAACCATCCACGTAGACTTAAAGGTAGTGGATATGATGGATTTTGACGTCATACTAGGAATGGACTGGTTAGCAGAAAACTTTGCTACCATAGACTGCCATAAGAAGGAGGTGATATTCACACCTCCTAACGGACTTACCTTTAAGTTTAAAGGAACCTCCACAGGTACCACCCCAAAAATAATATCGATGATGAAAGCGAGGCGCCTGATACAACAAGGGGGGTGGGCGTTTCTAGCCTATGCAGTAAATACAAAAGGAAAGGAAAAACCCATAGATACAATACCAGTAGTAAACGAATTTATGGATGTCTTTCGGGAGGACCTCCCGGGAATTCCTCCATCGCGAGAGGTAGACTTTGGAATAGATCTAGAACCAGGAACGGGACCCATCTCTAAGGCCCCGTACCGCATGGCACCAGCAGAACTAAAAGAGCTTAAAACACAACTGCAAGACCTACTAGATAAGGGCTTCATTCGACCTAGCGTGTCCCCTTGGGGTGCGCTAGTGTTGTTTGTTAAAAAGAAAGACGGCTCAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGGACGGTAAAGAACAAATACCCATTACCCCGTATTGAGGACCTATTTGATCAACTACGTGGGGCGACAGTGTTTTCTAAAATAGATCTTCGATCAGGATACCATCAAATTAAGATTAAAAATGAAGACATACCGAAAACAGCCTTTCGAACCAGATATGGCCACTACGAGTTTGTGGTGATGTCTTTTGGTCTCACCAATGCCCCAATGGTATTTATGGAACTAATGAACCGAGTATTTAAGGAGTGCCTAGACTTGTTTGTGATCGTGTTCATAGACGATATCCTGATATACTCGAAAACGGACCTAGAACACCAAGAACACCTTCGTAAAGCCTTAACTATCCTAAGAGAGAACAAGCTGTATGCCAATTTCACCAAGTGTGAATTTTGGATATGACAGGTTTCGTTTCTGGGGCACATAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAGGCGGTCACGAAATGGAAACGCCCAACAACGGTCACCGAGATACGAAGTTTCTTGGGATTGGCGGGTTATTATCGAAGGTTTGTCCAGGACTTCGCTAGAATAGCCACGCCTCTCACCCAATTAACCAAAAAAGGTGTACCTTTTGTTTGGGACGATACTTGTGAGGTCAGCTTTCAAGAACTAAAACAACGACTAGTATCCGCCCCAGTGCTCACTGTTCCAGAAAGTTCTGTGGGATACGCGATTTACAGTGACGCATCCAAAAAGGGATTAGGTTGTGTACTGATGCAACATGGCAAGGTTGTTGCGTATGCGTCACACCAACTAAAAGATTATGAGAAAAACTAGGTTGTTGCGTATGCGTCACACCAACTAAAAGATTATGAGAAAAACTATCCTACACATGATTTAGAGCTGGCAGCAGTAGTGTTCGCGTTAAAAATTTGGCGACACTACCTGTATGGCGAAAAGACCCAGATCTACACGGACCACAAAAGCCTAAAATATTTGTTCACCCAAAAAGAATTGAACATGCGGCAACGTAGATGGTTAGAGCTGGTAAAAGATTACGACATAGACATCTAGTACCACCCTGGAAAAGCAAACGTAGTCGCTGATGCACTGAGTCGAAAAGTAGTACACTCGTCGGCCCTCATCACTAGGGAGCCACGAGTGCGAACTGATTTCGAACAGGCTGATATCGTGGTGGTAACCAAAGAAGTTGCCGCCCAATTAGCCCGACTGACAGTGCGCTCCACGCTCAGACAAAGAATCATAGACTCACAACGTGAGGATCCAAGCCTAAGTAAAATCCTAGACCAATTGGAAGTTGGCCTAGTGGACGGATTCACTAAATCAACAGATGACGGATTATTATGCCAAGGGCGTTTATGTGTCCCACCCCTGAGCGGAATAAAGAATCAAATCCTAACGGAGGCACACAACTCAACCTTCTCGATACATCCAGGTGGAACAAAGATGTATCAAGACTTGAAAAAACACTTCTGGTGGCGAAGTATGAAGAAGGATATCGCGGAGTACGTGAGTAAGTGTCTAGTGTGCCAACAAGTAAAAGCCCCTAGGCAAAAAACCGCCGGGCTACTACAACCTCTAAGTATACAAGAATGGAAATGGGAAAACATTGCCATGGATTTCATAGTAGGCTTACCCAAAACATTAAAGGGCTATACGGTAATCTGGGTGGTCGTGGATCGCCTGACAAAGTCGGCTCACTTCCTACTGGGTAAGGCAACATATACAGTAGACAATTGGGCACAACTGTATGTTAAAGAAATTGTGAGGTTGCATGGAGTACCAGTGTCAATTGTGTCGGATCGGGACCCACGTTTTACGTCGGCCTTTTGGCGCGGTCTCTAAAGAGCGATGGGTACCCGCCTCGACTTTAGCACCGCCTTCCACCCACAAACAGATGGCCAAACAGAACGATTAAAACCAAATTCTGGAAGACATGCTTCGGGCATGCGTTATGGATTTCACAGGGAGTTGGGACACCAAACTACACTTAATGGAATTCTCTTACAATAACAGCTTCCAAGCAACCATCGGAATGGCACCCTTTGAGGCGTTGTATGGAAAACGATGTAGATCCCCATTGTGTTGGGACGAAGTAGGAGAACGAGAATTGATAGGACCCGAGCTGGTCCATGTCACCAATGAAGCAATCCAGAAAATCCGAGTAAGAATGCGTATCACGCAGAGTAGGCAAAAGAGCTACGCCGACGTTAGGCGTAGGAATTTAGAGTTTGAAGAGGGGGACCCAGTGTTCCTAAAAGTAGCCCCCATGAAAGGTATTCTAAGATTCGGACGCAAGGGGAAGCTCAGCCCCCGATTCATTGGACCGTTCGAAATTTTAGAAAGAGTAGGTCCGGTAGCTTACAAACTAGCTTTACCACCTTCACTTTCAAGCGTACATGATGTATTTCATGTGTCCATGTTAAGGAAATATATTCCAGACCCGACGCACGTAATAGACTACAAACCTCTTGAAATTGAGGAAAATTTAAGTTACCAGGAGAAATCGATTAAAATTCAAGCCCGAGAGGTGAAAGCCTTACGTAATAGGAGTATAGGTTTCGTTAAGGTATTGTGGCGTAACCACCAAGTCGAGGAAGCTACGTGGGAATGAGAGGAGGAAATAAAGGAAAAATATACCGAGTTGATCCACGAGTTCGAGGCTTTCGAGGACGAAAGTCCCTTTTAGGGATAGGTAATGTAACGGAACTGAAAAAAAAAAATGATGGTCGTCGGCAGAGCCGAAAACTCCGGCGAACGCCGGAGTTTTCGCTCACACACGACCCACAAAGGGCGGCCGAGGGCTGGGATGCCTCAAAATCGCGTCCCCGACCTTCAGCCACTCTGAAAGAACTTGCAAAGAAACGAAAACGGTAAGGAAAAAGGAGAGAGAACAGAAAACCGACGGAACTCCGGCGAAGCCGAATCGTACGAATCGACGTCGAAAACCCCTATTTCACACCACAAAAGTAATCCCAGAACCCTTTACACACATCAGGAGTAGGTTTTACGTGAATCCCGTACGCTGAACACCGACGGCAAGGAAGACGGAACGGCGAACTTCCGAGCTTCTCCAGATCCGGGAGTGCGAAGCCCTTACCAACGAAATCGGTACCAAAAAATGGGGTTAGGGTGAAGGATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAGAATGAGAATGACATGTAAGCATGAAAACGTGACACGGGGTTATGTTCATTAAATGATGACTGTAGGACTAGTGGGACCTCATGCATATTGTCTGATCATGCATTTGGGGGGATACCCCTATCCCATCACGAGGGTACGGACGCGTACATCCAAATGGCAGGACCACGATCGTTATGTCCTGCATAGTGCTGCCTGACGGTTTTAGTTTTAACGGGTCCCGGTGGGCCCCCAGAGCATGCCCATCGGCTAGGGACAGTGGCCCAGCGGTGTGCGAACTAGCTGGTGAGCCCATACTCGCACATATGGGCTACGTGTAGAGTATATGGTACATGTCCACGATTACCTGTTAGGATTACACCGTAGGGAAAACGAAACGAAACGATAGGTCCTATCATTTAATTGCATGTGTTTGTCGCATAACCCCGATAGGGGGTCACTTACTGAGTATTCTAGAAATACTCAAGCCTCGTGCTACTTTACTTTTGCAGATAAGGGCAACGCACCCATGTGACAACGACGACGGCATCGTACCCCCCAGGATCGTGGCACATGCATAG

mRNA sequence

ATGCATGCGTTGTCGGTCGGTACCCCGGCAGGGGTAGACCTAGTTACGAAAGATAGAGTAAGGGACGGACAAGTGGTAATAGCTGGACAAACCATCCACGTAGACTTAAAGGTAGTGGATATGATGGATTTTGACGTCATACTAGGAATGGACTGGTTAGCAGAAAACTTTGCTACCATAGACTGCCATAAGAAGGAGGTGATATTCACACCTCCTAACGGACTTACCTTTAAGTTTAAAGGAACCTCCACAGGTACCACCCCAAAAATAATATCGATGATGAAAGCGAGGCGCCTGATACAACAAGGGGGGTGGGCGTTTCTAGCCTATGCAGTAAATACAAAAGGAAAGGAAAAACCCATAGATACAATACCAGTAGTAAACGAATTTATGGATGTCTTTCGGGAGGACCTCCCGGGAATTCCTCCATCGCGAGAGGTAGACTTTGGAATAGATCTAGAACCAGGAACGGGACCCATCTCTAAGGCCCCGTACCGCATGGCACCAGCAGAACTAAAAGAGCTTAAAACACAACTGCAAGACCTACTAGATAAGGGCTTCATTCGACCTAGCGTGTCCCCTTGGGGTGCGCTAGTGTTGTTTGTTAAAAAGAAAGACGGCTCAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGGACGGTAAAGAACAAATACCCATTACCCCGTATTGAGGACCTATTTGATCAACTACGTGGGGCGACAGTGTTTTCTAAAATAGATCTTCGATCAGGATACCATCAAATTAAGATTAAAAATGAAGACATACCGAAAACAGCCTTTCGAACCAGATATGGCCACTACGAGTTTGTGGTGATGTCTTTTGGTCTCACCAATGCCCCAATGGTTTCGTTTCTGGGGCACATAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAGGCGGTCACGAAATGGAAACGCCCAACAACGGTCACCGAGATACGAAGTTTCTTGGGATTGGCGGGTTATTATCGAAGGTTTGTCCAGGACTTCGCTAGAATAGCCACGCCTCTCACCCAATTAACCAAAAAAGGTGTACCTTTTGTTTGGGACGATACTTGTGAGGTCAGCTTTCAAGAACTAAAACAACGACTAGTATCCGCCCCAGTGCTCACTGTTCCAGAAAGTTCTGTGGGATACGCGATTTACAGTGACGCATCCAAAAAGGGATTAGGTTGTGTACTGATGCAACATGGCAAGGTTGTTGCGTGGAACAAAGATGTATCAAGACTTGAAAAAACACTTCTGGTGGCGAAGTATGAAGAAGGATATCGCGGAGTACGTGAGCTTACCCAAAACATTAAAGGGCTATACGGTAATCTGGGTGGTCGTGGATCGCCTGACAAAGTCGGCTCACTTCCTACTGGCTTCCAAGCAACCATCGGAATGGCACCCTTTGAGGCGTTGTATGGAAAACGATGTAGATCCCCATTGTGTTGGGACGAAGTAGGAGAACGAGAATTGATAGGACCCGAGCTGGTCCATGTCACCAATGAAGCAATCCAGAAAATCCGAGTAAGAATGCGTATCACGCAGAGTAGGCAAAAGAGCTACGCCGACGTTAGGCGTAGGAATTTAGAGTTTGAAGAGGGGGACCCAGTGTTCCTAAAAGTAGCCCCCATGAAAGAGCCGAAAACTCCGGCGAACGCCGGAGTTTTCGCTCACACACGACCCACAAAGGGCGGCCGAGGGCTGGGATGCCTCAAAATCGCGTCCCCGACCTTCAGCCACTCTGAAAGAACTTGCAAAGAAACGAAAACGATAAGGGCAACGCACCCATGTGACAACGACGACGGCATCGTACCCCCCAGGATCGTGGCACATGCATAG

Coding sequence (CDS)

ATGCATGCGTTGTCGGTCGGTACCCCGGCAGGGGTAGACCTAGTTACGAAAGATAGAGTAAGGGACGGACAAGTGGTAATAGCTGGACAAACCATCCACGTAGACTTAAAGGTAGTGGATATGATGGATTTTGACGTCATACTAGGAATGGACTGGTTAGCAGAAAACTTTGCTACCATAGACTGCCATAAGAAGGAGGTGATATTCACACCTCCTAACGGACTTACCTTTAAGTTTAAAGGAACCTCCACAGGTACCACCCCAAAAATAATATCGATGATGAAAGCGAGGCGCCTGATACAACAAGGGGGGTGGGCGTTTCTAGCCTATGCAGTAAATACAAAAGGAAAGGAAAAACCCATAGATACAATACCAGTAGTAAACGAATTTATGGATGTCTTTCGGGAGGACCTCCCGGGAATTCCTCCATCGCGAGAGGTAGACTTTGGAATAGATCTAGAACCAGGAACGGGACCCATCTCTAAGGCCCCGTACCGCATGGCACCAGCAGAACTAAAAGAGCTTAAAACACAACTGCAAGACCTACTAGATAAGGGCTTCATTCGACCTAGCGTGTCCCCTTGGGGTGCGCTAGTGTTGTTTGTTAAAAAGAAAGACGGCTCAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGGACGGTAAAGAACAAATACCCATTACCCCGTATTGAGGACCTATTTGATCAACTACGTGGGGCGACAGTGTTTTCTAAAATAGATCTTCGATCAGGATACCATCAAATTAAGATTAAAAATGAAGACATACCGAAAACAGCCTTTCGAACCAGATATGGCCACTACGAGTTTGTGGTGATGTCTTTTGGTCTCACCAATGCCCCAATGGTTTCGTTTCTGGGGCACATAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAGGCGGTCACGAAATGGAAACGCCCAACAACGGTCACCGAGATACGAAGTTTCTTGGGATTGGCGGGTTATTATCGAAGGTTTGTCCAGGACTTCGCTAGAATAGCCACGCCTCTCACCCAATTAACCAAAAAAGGTGTACCTTTTGTTTGGGACGATACTTGTGAGGTCAGCTTTCAAGAACTAAAACAACGACTAGTATCCGCCCCAGTGCTCACTGTTCCAGAAAGTTCTGTGGGATACGCGATTTACAGTGACGCATCCAAAAAGGGATTAGGTTGTGTACTGATGCAACATGGCAAGGTTGTTGCGTGGAACAAAGATGTATCAAGACTTGAAAAAACACTTCTGGTGGCGAAGTATGAAGAAGGATATCGCGGAGTACGTGAGCTTACCCAAAACATTAAAGGGCTATACGGTAATCTGGGTGGTCGTGGATCGCCTGACAAAGTCGGCTCACTTCCTACTGGCTTCCAAGCAACCATCGGAATGGCACCCTTTGAGGCGTTGTATGGAAAACGATGTAGATCCCCATTGTGTTGGGACGAAGTAGGAGAACGAGAATTGATAGGACCCGAGCTGGTCCATGTCACCAATGAAGCAATCCAGAAAATCCGAGTAAGAATGCGTATCACGCAGAGTAGGCAAAAGAGCTACGCCGACGTTAGGCGTAGGAATTTAGAGTTTGAAGAGGGGGACCCAGTGTTCCTAAAAGTAGCCCCCATGAAAGAGCCGAAAACTCCGGCGAACGCCGGAGTTTTCGCTCACACACGACCCACAAAGGGCGGCCGAGGGCTGGGATGCCTCAAAATCGCGTCCCCGACCTTCAGCCACTCTGAAAGAACTTGCAAAGAAACGAAAACGATAAGGGCAACGCACCCATGTGACAACGACGACGGCATCGTACCCCCCAGGATCGTGGCACATGCATAG

Homology

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BLAST of CmoCh00G000930 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-33
Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = 1


Query: 123 TIPV--VNEFMDVFREDLPGIPPSRE---VDFGIDLEPGTGPISKAPYRMAPAELKELKT 182
           T+PV    ++ ++ R DLP  P       V   I+++PG       PY +     +E+  
Sbjct: 555 TLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINK 614

Query: 183 QLQDLLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFD 242
            +Q LLD  FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  
Sbjct: 615 IVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLS 674

Query: 243 QLRGATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP 290
           ++  A +F+ +DL SGYHQI ++ +D  KTAF T  G YE+ VM FGL NAP
Sbjct: 675 RIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAP 726

[Close]

BLAST of CmoCh00G000930 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-33
Identity = 74/172 (43.02%), Postives = 104/172 (60.47%), Query Frame = 1


Query: 123 TIPV--VNEFMDVFREDLPGIPPSRE---VDFGIDLEPGTGPISKAPYRMAPAELKELKT 182
           T+PV    ++ ++ R DLP  P       V   I+++PG       PY +     +E+  
Sbjct: 581 TLPVWLQQKYREIIRNDLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINK 640

Query: 183 QLQDLLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFD 242
            +Q LLD  FI PS SP  + V+ V KKDG+ RLC+DYR LNK T+ + +PLPRI++L  
Sbjct: 641 IVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLS 700

Query: 243 QLRGATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP 290
           ++  A +F+ +DL SGYHQI ++ +D  KTAF T  G YE+ VM FGL NAP
Sbjct: 701 RIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAP 752

[Close]

BLAST of CmoCh00G000930 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-25
Identity = 76/256 (29.69%), Postives = 135/256 (52.73%), Query Frame = 1


Query: 43  DFDVILGMDWLAENFATIDCHKKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQ 102
           ++D++LG   LAE  ATI    +EV          +   T   +  + ++M+    L Q 
Sbjct: 89  NYDLLLGRKLLAEAKATISYRDQEVTLYNNKYKLIEGIATHEQSHFQNVNMIPDTMLRQP 148

Query: 103 GGWAFLA----YAVNTKGKEKPIDTIPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTG 162
              + +     Y +     E+      ++ ++ D+   +   +  + +    I+ +    
Sbjct: 149 NKISPILESDLYRLEHLNNEEKQRLCALLQKYHDIQYHEGDKLTFTNQTKHTINTKHNLP 208

Query: 163 PISKAPYRMAPAELKELKTQLQDLLDKGFIRPSVSPWGALVLFV-KKKDGS----MRLCI 222
             SK  Y  A  +  E+++Q+QD+L++G IR S SP+ + +  V KK+D S     R+ I
Sbjct: 209 LYSKYSYPQAYEQ--EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVI 268

Query: 223 DYRELNKRTVKNKYPLPRIEDLFDQLRGATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRY 282
           DYR+LN+ TV +++P+P ++++  +L     F+ IDL  G+HQI++  E + KTAF T++
Sbjct: 269 DYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKH 328

Query: 283 GHYEFVVMSFGLTNAP 290
           GHYE++ M FGL NAP
Sbjct: 329 GHYEYLRMPFGLKNAP 342

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BLAST of CmoCh00G000930 vs. Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-24
Identity = 57/166 (34.34%), Postives = 99/166 (59.64%), Query Frame = 1


Query: 126 VVNEFMDVFRE-DLPGIP-PSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLL 185
           +  EF D+  E +   +P P + ++F ++L      +    Y + P +++ +  ++   L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 186 DKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAT 245
             G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP IE L  +++G+T
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 246 VFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP 290
           +F+K+DL+S YH I+++  D  K AFR   G +E++VM +G++ AP
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of CmoCh00G000930 vs. Swiss-Prot
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-24
Identity = 57/166 (34.34%), Postives = 99/166 (59.64%), Query Frame = 1


Query: 126 VVNEFMDVFRE-DLPGIP-PSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLL 185
           +  EF D+  E +   +P P + ++F ++L      +    Y + P +++ +  ++   L
Sbjct: 377 IYKEFKDITAETNTEKLPKPIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGL 436

Query: 186 DKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAT 245
             G IR S +     V+FV KK+G++R+ +DY+ LNK    N YPLP IE L  +++G+T
Sbjct: 437 KSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGST 496

Query: 246 VFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP 290
           +F+K+DL+S YH I+++  D  K AFR   G +E++VM +G++ AP
Sbjct: 497 IFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542

[Close]

BLAST of CmoCh00G000930 vs. TrEMBL
Match: A0A061EVL2_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_023542 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 3.4e-127
Identity = 228/387 (58.91%), Postives = 278/387 (71.83%), Query Frame = 1


Query: 53  LAENFATIDCHKKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAV 112
           L  + A +D  +KEV+    +G    F G        +IS +KA +L+Q+G   +LAY +
Sbjct: 336 LTAHRANVDYFRKEVVLRNSDGAEIVFVGEHRVLPSCVISAIKASKLVQKGYPTYLAYVI 395

Query: 113 NTKGKEKPIDTIPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAEL 172
           +T   E  ++ +P+V+EF+DVF +DLPG+PP RE++F IDL P T PIS  PYRMAPAEL
Sbjct: 396 DTSKGEPKLEDVPIVSEFLDVFPDDLPGLPPDRELEFPIDLLPDTAPISIPPYRMAPAEL 455

Query: 173 KELKTQLQDLLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRI 232
           KELK QLQDL+DKGFIR S+SPWGALVLFVKKKDG++RLCIDYR+LN+ T+KNKYPLPRI
Sbjct: 456 KELKVQLQDLVDKGFIRLSISPWGALVLFVKKKDGTLRLCIDYRQLNRVTIKNKYPLPRI 515

Query: 233 EDLFDQLRGATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAPM-- 292
           +DLFDQLRGA VFSKIDLRSGY+Q++IK +D+PKTAFR RYGHYEF+VM FGLTNA    
Sbjct: 516 DDLFDQLRGAMVFSKIDLRSGYYQLRIKEQDVPKTAFRMRYGHYEFLVMPFGLTNALAVF 575

Query: 293 -------------------------VSFLGHIVSKDGIFVDPNKIEAVTKWKRPTTVTEI 352
                                    V FLGH+VS  GI+VDP KI+A+ +W++P  VTEI
Sbjct: 576 MDLMNRVFHPYLDKFVIVFIDDILEVVFLGHVVSGAGIYVDPKKIQAILQWEQPRMVTEI 635

Query: 353 RSFLGLAGYYRRFVQDFARIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVP 412
            SFLGL  YYRRFVQ F+ IA PLT+LT KGV F WDD CE  FQELK RL S PVLT+P
Sbjct: 636 SSFLGLVDYYRRFVQGFSLIAAPLTRLTHKGVKFEWDDVCENRFQELKNRLTSTPVLTLP 695

[Close]

BLAST of CmoCh00G000930 vs. TrEMBL
Match: A0A061G9E7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 4.9e-126
Identity = 223/355 (62.82%), Postives = 269/355 (75.77%), Query Frame = 1


Query: 90  IISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDTIPVVNEFMDVFREDLPGIPPSREVDF 149
           +I  +KA +L+Q+G  A+LAY ++T   E  ++ +P+V+EF DVF +DLP +PP RE++F
Sbjct: 345 LIFAIKASKLVQKGYPAYLAYVIDTSNGEPKLEDVPIVSEFPDVFPDDLPRLPPDRELEF 404

Query: 150 GIDLEPGTGPISKAPYRMAPAELKELKTQLQDLLDKGFIRPSVSPWGALVLFVKKKDGSM 209
            IDL  GT PIS  PYRMAPAELKELK QLQDL+DKGFIRPS+SPWGA VLFVKKKDG++
Sbjct: 405 PIDLLSGTAPISIPPYRMAPAELKELKVQLQDLVDKGFIRPSISPWGAPVLFVKKKDGTL 464

Query: 210 RLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGATVFSKIDLRSGYHQIKIKNEDIPKTAF 269
           RLCIDYR+LN+ T+KNKYPLP I+DLFDQLRGA VFSKIDLRSGY+Q++IK +D+PKTAF
Sbjct: 465 RLCIDYRQLNRVTIKNKYPLPWIDDLFDQLRGAMVFSKIDLRSGYYQLRIKEQDVPKTAF 524

Query: 270 RTRYGHYEFVVMSFGLTNAPM-----------------------------VSFLGHIVSK 329
           RTRYGHYEF+VM FGLTNAP                              V FLGH+VS 
Sbjct: 525 RTRYGHYEFLVMLFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILLKEVVFLGHVVSG 584

Query: 330 DGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYRRFVQDFARIATPLTQLTKKGVPFV 389
            GI+VDP KIEA+ +W++P TVTEIRSFLGL GYYRRFVQ F+ IA PLT+LT+KGV F 
Sbjct: 585 AGIYVDPKKIEAILQWEQPRTVTEIRSFLGLVGYYRRFVQRFSLIAAPLTRLTRKGVKFE 644

Query: 390 WDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSDASKKGLGCVLMQHGKVVAW 416
           WDD CE  FQELK RL SAP+LT+  S   + +YSDA K GLGCVLMQ  KV+A+
Sbjct: 645 WDDVCENRFQELKNRLTSAPILTLSVSEKEFVVYSDAPKLGLGCVLMQDEKVIAY 699

[Close]

BLAST of CmoCh00G000930 vs. TrEMBL
Match: Q6F2D6_SOLDE (Putative polyprotein, identical OS=Solanum demissum GN=SDM1_49t00014 PE=4 SV=2)

HSP 1 Score: 456.1 bits (1172), Expect = 7.0e-125
Identity = 239/458 (52.18%), Postives = 299/458 (65.28%), Query Frame = 1


Query: 4    LSVGTPAGVDLVTKDRVRDGQVVIAGQTIHVDLKVVDMMDFDVILGMDWLAENFATIDCH 63
            + V TP G  LV    +R   V I G    VDL ++DM+DFDVILGMDWL+   A +DC+
Sbjct: 695  IHVSTPVGESLVVDQILRSCLVTIQGCDTRVDLILLDMVDFDVILGMDWLSPYHAVLDCY 754

Query: 64   KKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDT 123
             K V    P      ++G  + T   IIS M+ARRL+  G  A+LAY  +    +  +D+
Sbjct: 755  AKTVTLAMPGISPVLWQGAYSHTPTWIISFMRARRLVASGCLAYLAYVRDVSRDDSSVDS 814

Query: 124  IPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLL 183
            +PVV EF DVF  DLPG+PP R++DF IDLEP T PIS  PYRMAPAEL+EL  QL+DLL
Sbjct: 815  VPVVREFADVFPIDLPGLPPDRDIDFAIDLEPDTRPISIPPYRMAPAELRELSAQLEDLL 874

Query: 184  DKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAT 243
             KGFIRPSVSPWGA VLFVKKKDG+MR+CIDYR+LNK TVKN+YP+PRI+DLFDQL+GA 
Sbjct: 875  GKGFIRPSVSPWGAPVLFVKKKDGTMRMCIDYRQLNKVTVKNRYPMPRIDDLFDQLQGAA 934

Query: 244  VFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP-------------- 303
            VFSKIDLRSGYHQ++I+  DIPKTAFRTRYGHYEF+VMSFGLTNAP              
Sbjct: 935  VFSKIDLRSGYHQLRIRAADIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMTRVFRPY 994

Query: 304  ----MVSFLGHIVS--KDGIFVDPNKIE-----------AVTK---WKRPTTVTEIRS-- 363
                ++ F+  I++     ++   +K E            V+K      P  +  IR   
Sbjct: 995  LDLFVIVFIDDILTLRDQRLYAKFSKCEFWLESVAFLGHVVSKEGIRVDPAKIEAIRDWV 1054

Query: 364  ----------FLGLAGYYRRFVQDFARIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLV 416
                      F+GLAGYYRRFV+ F+ IA  LT+LT+  VPFVW + CE SF  LK+ L 
Sbjct: 1055 RPTSVTEIRSFVGLAGYYRRFVEGFSTIAALLTRLTRVDVPFVWSEECEASFLRLKELLT 1114

[Close]

BLAST of CmoCh00G000930 vs. TrEMBL
Match: Q01MK3_ORYSA (OSIGBa0093M15.2 protein OS=Oryza sativa GN=OSIGBa0093M15.2 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.4e-120
Identity = 221/420 (52.62%), Postives = 285/420 (67.86%), Query Frame = 1


Query: 2   HALSVGTPAGVDLVTKDRVRDGQVVIAGQTIHVDLKVVDMMDFDVILGMDWLAENFATID 61
           H L V TP+   L +  R    ++ I G     +L +++  D DVILGMDWLA     ID
Sbjct: 362 HPLMVSTPSNQAL-SLQRSPSVRIEIKGVPFLANLILLESKDIDVILGMDWLARYKGVID 421

Query: 62  CHKKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTKGKEKPI 121
           C  ++V  T  +G               I+  + +  L              ++  +  +
Sbjct: 422 CANRKVTLTSNDGRVV------------IVHALSSESL-------------RSRLNQITL 481

Query: 122 DTIPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQD 181
           + IPVV E+ DVF +DLPG+PP R+++F ID  PGT PI K PYRMA  EL E+K Q+ D
Sbjct: 482 EEIPVVREYPDVFLDDLPGMPPKRDIEFRIDFVPGTTPIHKRPYRMAANELAEVKRQVDD 541

Query: 182 LLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRG 241
           LL KG+IRPS SPWGA V+FV+KKD + R+C+DYR LN  T+KNKYPLPRI+DLFDQL+G
Sbjct: 542 LLQKGYIRPSSSPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKG 601

Query: 242 ATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP------MVSFLG 301
           ATVFS IDLRSGYHQ++IK EDIPKTAF TRYG +E  VMSFGLTNAP      M  FLG
Sbjct: 602 ATVFSMIDLRSGYHQLRIKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKFLG 661

Query: 302 HIVSKDGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYRRFVQDFARIATPLTQLTKK 361
           H++S  G+ VDP+ +E+VT WK+  TV+EIRSFLGLAGYYRRF+++F++IA P+T+L +K
Sbjct: 662 HVISAGGVAVDPSNVESVTNWKQSKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQK 721

Query: 362 GVPFVWDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSDASKKGLGCVLMQHGKVVAW 416
            V + W + CE SFQELK RL+SAP+L +P+   G+ +Y DASK GLGCVLMQ GKVVA+
Sbjct: 722 DVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKLGLGCVLMQDGKVVAY 755

[Close]

BLAST of CmoCh00G000930 vs. TrEMBL
Match: A0A061FW58_THECC (Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_013113 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 6.8e-120
Identity = 232/457 (50.77%), Postives = 294/457 (64.33%), Query Frame = 1


Query: 4   LSVGTPAGVDLVTKDRVRDGQVVIAGQTIHVDLKVVDMMDFDVILGMDWLAENFATIDCH 63
           L+V TP     V +       V +  +   V+L V+D +DFDVILGMDWLA   A++DC+
Sbjct: 387 LTVSTPLNEVFVAEWEYESCVVRVEDKNTLVNLVVLDTLDFDVILGMDWLASCHASVDCY 446

Query: 64  KKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDT 123
            K V F  P   +F  +G  +     +IS+M  R+L++QG   +LA   +T+ K   I  
Sbjct: 447 HKLVKFDFPGEPSFNIQGDRSNFPTNLISIMSTRKLLRQGCLGYLAVVKDTQAKVGDISQ 506

Query: 124 IPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLL 183
           + VVNEF D +                             P RMAPAELKELK QL+DLL
Sbjct: 507 VSVVNEFKDTYIH--------------------------TPIRMAPAELKELKDQLEDLL 566

Query: 184 DKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAT 243
           DKGFIRPSVSPWGALVLFVKKKDGS+RLCIDYR+LNK TVKNKY LPRI+DLFDQL+GA 
Sbjct: 567 DKGFIRPSVSPWGALVLFVKKKDGSLRLCIDYRQLNKVTVKNKYSLPRIDDLFDQLQGAQ 626

Query: 244 VFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAPMVSFLG-------- 303
            FSKIDL+SGYHQ++I+NE IPKT FRTRYGHYEF+VMSFGLTNA + +F+         
Sbjct: 627 CFSKIDLQSGYHQLRIQNEAIPKTTFRTRYGHYEFLVMSFGLTNA-LAAFMDLMNWVFKP 686

Query: 304 -------------------HIVSKDGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYR 363
                              H+VSKDG+ VDP K++ V KW R T+V+EIRSFLGLA YYR
Sbjct: 687 YLDKFVVVFIDDILIYSKRHVVSKDGVQVDPKKVKVVEKWPRQTSVSEIRSFLGLACYYR 746

Query: 364 RFVQDFARIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSD 423
           RFV+DF++I  PLT+LT K   F W D CE SF++LK  L +APVL++P+ + GY ++ D
Sbjct: 747 RFVKDFSKIVFPLTKLTCKDTKFEWSDACENSFEKLKACLTTAPVLSLPQGTRGYTVFCD 806

Query: 424 ASKKGLGCVLMQHGKVVAW-NKDVSRLEKTLLVAKYE 433
           A + GLGCVLMQHGKV+ + ++ + R E+  L    E
Sbjct: 807 ALQIGLGCVLMQHGKVIEYASRQLKRHEQNYLAHDLE 816

[Close]

BLAST of CmoCh00G000930 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-20
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 1


Query: 289 PMVSFLGH--IVSKDGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYRRFVQDFARIA 348
           P +++LGH  I+S +G+  DP K+EA+  W  P   TE+R FLGL GYYRRFV+++ +I 
Sbjct: 28  PQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIV 87

Query: 349 TPLTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVPE 387
            PLT+L KK     W +   ++F+ LK  + + PVL +P+
Sbjct: 88  RPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPD 126

[Close]

BLAST of CmoCh00G000930 vs. NCBI nr
Match: gi|969998696|ref|XP_015076192.1| (PREDICTED: uncharacterized protein LOC107020370 [Solanum pennellii])

HSP 1 Score: 533.1 bits (1372), Expect = 6.5e-148
Identity = 264/445 (59.33%), Postives = 326/445 (73.26%), Query Frame = 1


Query: 4    LSVGTPAGVDLVTKDRVRDGQVVIAGQTIHVDLKVVDMMDFDVILGMDWLAENFATIDCH 63
            + V TP G  +V     R   V + G   H DLKV+DM+DFDVILGMDWL+   A ++CH
Sbjct: 574  IRVSTPVGDSVVVDQVYRLCTVTLMGYDTHADLKVLDMIDFDVILGMDWLSSYHAILNCH 633

Query: 64   KKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDT 123
             K +    P     +++GT +  +  +IS +KAR+L+Q+G  A+LA+  +T  +   +++
Sbjct: 634  AKTITLAMPGIPIVEWRGTLSHPSKGVISFLKARQLVQRGCLAYLAHIRDTSIETPMLES 693

Query: 124  IPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLL 183
            IPVV+EF +VF  DLPG+PP R++DF ID+EPGT PIS  PYRMAPAELKELK QLQDLL
Sbjct: 694  IPVVSEFSEVFPTDLPGLPPDRDIDFCIDVEPGTRPISIPPYRMAPAELKELKEQLQDLL 753

Query: 184  DKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAT 243
             KGFIRPSVSPWGA VLFVKKKDGSMR+CIDYR+LNK T++NKYP+PRI+DLFDQL+GA+
Sbjct: 754  SKGFIRPSVSPWGAPVLFVKKKDGSMRMCIDYRQLNKVTIRNKYPIPRIDDLFDQLQGAS 813

Query: 244  VFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP-------------- 303
            VFSKIDLRSGYHQ+K++ EDIPKTAFRTRYGHYEF+VMSFGLTNAP              
Sbjct: 814  VFSKIDLRSGYHQLKVRAEDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMNEVFRPY 873

Query: 304  -------------MVSFLGHIVSKDGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYR 363
                          V+FLGH+VSK+GI VDP KIEAV  W RPT+VTEIRSFLGLAGY R
Sbjct: 874  LDSFVIVFIDDILSVAFLGHVVSKEGIMVDPKKIEAVRDWIRPTSVTEIRSFLGLAGYNR 933

Query: 364  RFVQDFARIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSD 422
            RFV+ F+ IA+PLT+LT+K V F W D CEVSFQ+LK  L +AP+LT+P    G+ +Y D
Sbjct: 934  RFVEGFSSIASPLTRLTQKEVTFQWFDECEVSFQKLKTLLTTAPILTLPVEGEGFVVYGD 993

[Close]

BLAST of CmoCh00G000930 vs. NCBI nr
Match: gi|590633610|ref|XP_007028151.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 463.8 bits (1192), Expect = 4.8e-127
Identity = 228/387 (58.91%), Postives = 278/387 (71.83%), Query Frame = 1


Query: 53  LAENFATIDCHKKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAV 112
           L  + A +D  +KEV+    +G    F G        +IS +KA +L+Q+G   +LAY +
Sbjct: 336 LTAHRANVDYFRKEVVLRNSDGAEIVFVGEHRVLPSCVISAIKASKLVQKGYPTYLAYVI 395

Query: 113 NTKGKEKPIDTIPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAEL 172
           +T   E  ++ +P+V+EF+DVF +DLPG+PP RE++F IDL P T PIS  PYRMAPAEL
Sbjct: 396 DTSKGEPKLEDVPIVSEFLDVFPDDLPGLPPDRELEFPIDLLPDTAPISIPPYRMAPAEL 455

Query: 173 KELKTQLQDLLDKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRI 232
           KELK QLQDL+DKGFIR S+SPWGALVLFVKKKDG++RLCIDYR+LN+ T+KNKYPLPRI
Sbjct: 456 KELKVQLQDLVDKGFIRLSISPWGALVLFVKKKDGTLRLCIDYRQLNRVTIKNKYPLPRI 515

Query: 233 EDLFDQLRGATVFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAPM-- 292
           +DLFDQLRGA VFSKIDLRSGY+Q++IK +D+PKTAFR RYGHYEF+VM FGLTNA    
Sbjct: 516 DDLFDQLRGAMVFSKIDLRSGYYQLRIKEQDVPKTAFRMRYGHYEFLVMPFGLTNALAVF 575

Query: 293 -------------------------VSFLGHIVSKDGIFVDPNKIEAVTKWKRPTTVTEI 352
                                    V FLGH+VS  GI+VDP KI+A+ +W++P  VTEI
Sbjct: 576 MDLMNRVFHPYLDKFVIVFIDDILEVVFLGHVVSGAGIYVDPKKIQAILQWEQPRMVTEI 635

Query: 353 RSFLGLAGYYRRFVQDFARIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVP 412
            SFLGL  YYRRFVQ F+ IA PLT+LT KGV F WDD CE  FQELK RL S PVLT+P
Sbjct: 636 SSFLGLVDYYRRFVQGFSLIAAPLTRLTHKGVKFEWDDVCENRFQELKNRLTSTPVLTLP 695

[Close]

BLAST of CmoCh00G000930 vs. NCBI nr
Match: gi|590617810|ref|XP_007023888.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 459.9 bits (1182), Expect = 7.0e-126
Identity = 223/355 (62.82%), Postives = 269/355 (75.77%), Query Frame = 1


Query: 90  IISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDTIPVVNEFMDVFREDLPGIPPSREVDF 149
           +I  +KA +L+Q+G  A+LAY ++T   E  ++ +P+V+EF DVF +DLP +PP RE++F
Sbjct: 345 LIFAIKASKLVQKGYPAYLAYVIDTSNGEPKLEDVPIVSEFPDVFPDDLPRLPPDRELEF 404

Query: 150 GIDLEPGTGPISKAPYRMAPAELKELKTQLQDLLDKGFIRPSVSPWGALVLFVKKKDGSM 209
            IDL  GT PIS  PYRMAPAELKELK QLQDL+DKGFIRPS+SPWGA VLFVKKKDG++
Sbjct: 405 PIDLLSGTAPISIPPYRMAPAELKELKVQLQDLVDKGFIRPSISPWGAPVLFVKKKDGTL 464

Query: 210 RLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGATVFSKIDLRSGYHQIKIKNEDIPKTAF 269
           RLCIDYR+LN+ T+KNKYPLP I+DLFDQLRGA VFSKIDLRSGY+Q++IK +D+PKTAF
Sbjct: 465 RLCIDYRQLNRVTIKNKYPLPWIDDLFDQLRGAMVFSKIDLRSGYYQLRIKEQDVPKTAF 524

Query: 270 RTRYGHYEFVVMSFGLTNAPM-----------------------------VSFLGHIVSK 329
           RTRYGHYEF+VM FGLTNAP                              V FLGH+VS 
Sbjct: 525 RTRYGHYEFLVMLFGLTNAPAVFMDLMNRVFHPYLDKFVIVFIDDILLKEVVFLGHVVSG 584

Query: 330 DGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYRRFVQDFARIATPLTQLTKKGVPFV 389
            GI+VDP KIEA+ +W++P TVTEIRSFLGL GYYRRFVQ F+ IA PLT+LT+KGV F 
Sbjct: 585 AGIYVDPKKIEAILQWEQPRTVTEIRSFLGLVGYYRRFVQRFSLIAAPLTRLTRKGVKFE 644

Query: 390 WDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSDASKKGLGCVLMQHGKVVAW 416
           WDD CE  FQELK RL SAP+LT+  S   + +YSDA K GLGCVLMQ  KV+A+
Sbjct: 645 WDDVCENRFQELKNRLTSAPILTLSVSEKEFVVYSDAPKLGLGCVLMQDEKVIAY 699

[Close]

BLAST of CmoCh00G000930 vs. NCBI nr
Match: gi|923837836|ref|XP_013699774.1| (PREDICTED: uncharacterized protein LOC106403497 [Brassica napus])

HSP 1 Score: 456.4 bits (1173), Expect = 7.7e-125
Identity = 236/427 (55.27%), Postives = 289/427 (67.68%), Query Frame = 1


Query: 20   VRDGQVVIAGQTIHVDLKVVDMMDFDVILGMDWLAENFATIDCHKKEVIFTPPNGLTFKF 79
            V+D  V+I  + + VDL VV + + +VILGMDWL ++ AT++CH+  V F    G    F
Sbjct: 636  VKDIPVLITDREMPVDLIVVPLENHEVILGMDWLGKHRATLNCHRGRVQFETECGRPVWF 695

Query: 80   KGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTK---GKEKPIDTIPVVNEFMDVFRE 139
            +G  +    K++S ++A R++  G  A+LA  + TK   G   P D IP+VNEF DVFR 
Sbjct: 696  QGLCSTPGLKVVSALRAERMLLDGCEAYLA-TITTKEVVGGGDP-DGIPLVNEFEDVFRS 755

Query: 140  DLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLLDKGFIRPSVSPWG 199
             L G+PP R   F I+LEPGT P+SK+PYRMAPAE+ ELK QL++LLDKGFI PSVSPWG
Sbjct: 756  -LQGVPPDRADPFKIELEPGTAPLSKSPYRMAPAEMAELKKQLEELLDKGFICPSVSPWG 815

Query: 200  ALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGATVFSKIDLRSGYHQ 259
            A VLFVKKKDGS RLC+DYR LN+ TVKNKYPLPRI++L DQLRGA  FSKIDL SGYHQ
Sbjct: 816  APVLFVKKKDGSFRLCVDYRGLNRVTVKNKYPLPRIDELLDQLRGAKWFSKIDLASGYHQ 875

Query: 260  IKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAPM-------------------------- 319
            I I+  DI KTAFRTRYGHYEFVVM FGLTNAP                           
Sbjct: 876  IPIEPSDIKKTAFRTRYGHYEFVVMPFGLTNAPAAFMNMMNGVFREYLDEFVIIFIDDIL 935

Query: 320  --VSFLGHIVSKDGIFVDPNKIEAVTKWKRPTTVTEIRSFLGLAGYYRRFVQDFARIATP 379
              + FLGHIVS  G+ VDP KI+ +  W +P   TE+RSFLGLAGYYR+FV+ F+ +A P
Sbjct: 936  KSIGFLGHIVSDKGVSVDPEKIKCIRNWPQPRNATEVRSFLGLAGYYRKFVKGFSSVAQP 995

Query: 380  LTQLTKKGVPFVWDDTCEVSFQELKQRLVSAPVLTVPESSVGYAIYSDASKKGLGCVLMQ 416
            +TQLT K V F W D CE SF  LK  L S P+L +PE+   Y +Y+DAS  GLGCVL Q
Sbjct: 996  MTQLTGKDVKFAWSDQCEESFSALKDMLTSTPILVLPEADQPYVVYTDASITGLGCVLTQ 1055

[Close]

BLAST of CmoCh00G000930 vs. NCBI nr
Match: gi|113205363|gb|AAT66771.2| (Putative polyprotein, identical [Solanum demissum])

HSP 1 Score: 456.1 bits (1172), Expect = 1.0e-124
Identity = 239/458 (52.18%), Postives = 299/458 (65.28%), Query Frame = 1


Query: 4    LSVGTPAGVDLVTKDRVRDGQVVIAGQTIHVDLKVVDMMDFDVILGMDWLAENFATIDCH 63
            + V TP G  LV    +R   V I G    VDL ++DM+DFDVILGMDWL+   A +DC+
Sbjct: 695  IHVSTPVGESLVVDQILRSCLVTIQGCDTRVDLILLDMVDFDVILGMDWLSPYHAVLDCY 754

Query: 64   KKEVIFTPPNGLTFKFKGTSTGTTPKIISMMKARRLIQQGGWAFLAYAVNTKGKEKPIDT 123
             K V    P      ++G  + T   IIS M+ARRL+  G  A+LAY  +    +  +D+
Sbjct: 755  AKTVTLAMPGISPVLWQGAYSHTPTWIISFMRARRLVASGCLAYLAYVRDVSRDDSSVDS 814

Query: 124  IPVVNEFMDVFREDLPGIPPSREVDFGIDLEPGTGPISKAPYRMAPAELKELKTQLQDLL 183
            +PVV EF DVF  DLPG+PP R++DF IDLEP T PIS  PYRMAPAEL+EL  QL+DLL
Sbjct: 815  VPVVREFADVFPIDLPGLPPDRDIDFAIDLEPDTRPISIPPYRMAPAELRELSAQLEDLL 874

Query: 184  DKGFIRPSVSPWGALVLFVKKKDGSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAT 243
             KGFIRPSVSPWGA VLFVKKKDG+MR+CIDYR+LNK TVKN+YP+PRI+DLFDQL+GA 
Sbjct: 875  GKGFIRPSVSPWGAPVLFVKKKDGTMRMCIDYRQLNKVTVKNRYPMPRIDDLFDQLQGAA 934

Query: 244  VFSKIDLRSGYHQIKIKNEDIPKTAFRTRYGHYEFVVMSFGLTNAP-------------- 303
            VFSKIDLRSGYHQ++I+  DIPKTAFRTRYGHYEF+VMSFGLTNAP              
Sbjct: 935  VFSKIDLRSGYHQLRIRAADIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMTRVFRPY 994

Query: 304  ----MVSFLGHIVS--KDGIFVDPNKIE-----------AVTK---WKRPTTVTEIRS-- 363
                ++ F+  I++     ++   +K E            V+K      P  +  IR   
Sbjct: 995  LDLFVIVFIDDILTLRDQRLYAKFSKCEFWLESVAFLGHVVSKEGIRVDPAKIEAIRDWV 1054

Query: 364  ----------FLGLAGYYRRFVQDFARIATPLTQLTKKGVPFVWDDTCEVSFQELKQRLV 416
                      F+GLAGYYRRFV+ F+ IA  LT+LT+  VPFVW + CE SF  LK+ L 
Sbjct: 1055 RPTSVTEIRSFVGLAGYYRRFVEGFSTIAALLTRLTRVDVPFVWSEECEASFLRLKELLT 1114

The following BLAST results are available for this feature:

BLAST of CmoCh00G000930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YG31B_YEAST	6.9e-33	43.02	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	6.9e-33	43.02	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
POL3_DROME	1.8e-25	29.69	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
TF24_SCHPO	1.2e-24	34.34	Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
TF26_SCHPO	1.2e-24	34.34	Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CmoCh00G000930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EVL2_THECC	3.4e-127	58.91	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_023542 PE=4 SV...	[more]
A0A061G9E7_THECC	4.9e-126	62.82	DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_028292 PE=4 SV...	[more]
Q6F2D6_SOLDE	7.0e-125	52.18	Putative polyprotein, identical OS=Solanum demissum GN=SDM1_49t00014 PE=4 SV=2	[more]
Q01MK3_ORYSA	1.4e-120	52.62	OSIGBa0093M15.2 protein OS=Oryza sativa GN=OSIGBa0093M15.2 PE=4 SV=1	[more]
A0A061FW58_THECC	6.8e-120	50.77	Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_013113 PE=4 SV=1	[more]

BLAST of CmoCh00G000930 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	3.2e-20	43.00	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh00G000930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|969998696\|ref\|XP_015076192.1\|	6.5e-148	59.33	PREDICTED: uncharacterized protein LOC107020370 [Solanum pennellii]	[more]
gi\|590633610\|ref\|XP_007028151.1\|	4.8e-127	58.91	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|590617810\|ref\|XP_007023888.1\|	7.0e-126	62.82	DNA/RNA polymerases superfamily protein [Theobroma cacao]	[more]
gi\|923837836\|ref\|XP_013699774.1\|	7.7e-125	55.27	PREDICTED: uncharacterized protein LOC106403497 [Brassica napus]	[more]
gi\|113205363\|gb\|AAT66771.2\|	1.0e-124	52.18	Putative polyprotein, identical [Solanum demissum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000477	RT_dom
IPR013242	Retroviral aspartyl protease

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
molecular_function	GO:0005488	binding
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh00G000930.1	CmoCh00G000930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 202..291 score: 7.5
IPR013242	Retroviral aspartyl protease	PFAM	PF08284	RVP_2	coord: 4..72 score: 6.
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 151..291 score: 5.5
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 195..553 score: 3.8E
None	No IPR available	PANTHER	PTHR24559:SF207	SUBFAMILY NOT NAMED	coord: 195..553 score: 3.8E
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 126..417 score: 4.89E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh00G000930	CmaCh00G001860	Cucurbita maxima (Rimu)	cmacmoB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh00G000930	Cucurbita maxima (Rimu)	cmacmoB000