CmaCh00G001860 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G001860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-directed DNA polymerase homolog
LocationCma_Chr00 : 11611277 .. 11613731 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACCGCCTATAGGGTAAAGGATGGTCACATAGTAATATCAGGGGTTAGCTTGGGTGTAGACTTGATGGTGGTCGATATGACCGTGTACGATGTAATCCTAGACATGGACTGGTTGGCGGAAAATCATGCTAGCATAGACTGTCACAAGAGGGAGGTCATTTTCACACCACCATCGAGGACCAGATTCAGGTTCAGGGGCACCAGTCTGGGAACGATGCCCAAGGTGATATCGATGATGAAGGCGAAGAAGCTGGTCCGGCACGGGGCCTGGGCGATACTAGCCATCATGGCAAGGATCAAGGAAGAAGGCGTCCCCCTAACCGAGTTTCCAATAGTGAGTGAGTTCCCAGATGTGTTTCCAGAGGACCTACCGGGGACTCCCCCATCCCGAGATGTCGACTTTGCTATAGAACTGGAATCAGGGACCGGCCCCATATCCAAGGCATCGTACCGCATGGCACCAGCAGAGCTGGAGGAACTTAAGGTGCAACTATAAGAACTCCTAGACAAGGGGTTTATTAGACCGAGCGTGTCGCCTTGGGGCGCACCGGTATTATTCGTCAATTAAAAGGACGGTTCCATGCGCTTGTTCGTCGATTACAGGGAACTGAATAAGAGGACAGTGAAGAACAGGTACCCCCTCCCACACATCGAAGACTTATTTGATCAGCTCAGAGAGGCCACGATGTTTTCAAAGATCGATCTTCGTTCAGGTTACCACCAAGATCAAGATAAAAAATGAGGACGTGCCAAAAACAGCTTTTAGAACAAGGTACGACCATTATGAGTTTGTAGTAATGTCATTTAGACTCACTAATGCTCCTGCAGTGTTTATGGAACTGATGAATCGGGTGTTCAAGGAATACTTGGATACCTTTGTCATTGTATTCATAGATGACATCCTGGTATATTCAAGGACGGATTAGGAGCACCAAACGCACCTGAGGAAGGCCTTGACAGTCTTGAGGGAAAACAGGTTGTGTGGCAAGTTCTCGAAATGCGAGTTTTGGTTACGCGAAGTCTCATTCCTAGGACATGTGATATCGGTAGAAGGAGTGTCAGTTGACCCTGCCAAGGTGGAGGCGTTCACCGGCTGGGCCCGTCCAACTACTGTGACTGAGGTACGGAGTTTTCTGGGTCTGGCAGGCTACTACCGTTGCTTCGTGCAGGACTTCTCCAAGATAGCGACACCTCTCTCACGACTGACTCGAAAGGTTACGGCGTTCGTATGGACCGAGGAGTGCGAGGCAAGCTTCCGGGATCTGGACGAGAGACTGGAGACTGCACTCGTGCTCACAATGCCCGATGGTACAGGGAACTACGTCATTTTTAGTGATGCTTCCAAAAAGAGCCTAGGGTGCGTGTTGATGCAACGTGGGAGGGTTATTGCCTACGCATCCAGACAACTGAAGGACTATGAAAAGAACTACCTTGTGCATGACTTGGAACTGGCAGCAGTAGTCTTCGCATTAAAGATATGGCGACACTACTTGTATGGGGAGAGGACTCAAATCTATACCGATCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGAAATTGAATATGAGGCAACAATGGTGGCTTCAGCTAGTCAAGAATTATGATATAGATATCCAGTACTACACCAGGAAGGCCAACGTAGTCATAGATGCCCTGAGTAAGAAGGCAGCGCATTCGTCGGCACTATTCATGAAAGAACCCCGAGTGCAGGTAGACTTCGAGCGAGCGGGGATAGCAGTAGCACTGAAGGGTATTAAGGCGCAACTGCCTCGACTAATGTTGCAACCCACCCTTCGGCAGAGAATCATTGAGGCGCAGGCAAGGGACTCCGGTTTAACGAGGGCACTTAACAAAAGGTTTCATAACCAGCGGGTGGGTACTCCAAGGCAGCGAAGCACATAACTCCCCATTCGTCATGCACCCTGGCGGCACGAAGATGTATCAGGACCTCAGACCCCACTTCTGGTGGTGTGGTATGAAGAAGGATATCGCGGAGTTCGTCAGCAGATGCTTGGTTTGCCAACATGTTAAGCACCCAGACAGAGACCAGCAGGATTACTACAGCCCCTCAACATACCAGAGTGGAAGTGGGAGAACATCGCCATGGATTTCATAGTGGGCCTACCCAAAACGCTAAAGGGTTACACGGTCATATGGGTGGTCGTGGACAGATTAACGAAGTCAGCACATTTCCTCCCCGGCAAGGCCACCTATATAGTGGACATGTGGGCACAACTATACATGAAGGAAATCGTCAGGTTGCATGGGGTCCCCATGTCGATTGTATCAGACCGAGATCCACGGTTTACTTCGGCATTTTGGCGTGGACTCCAGAAGGCGTTGGGCACTCGACTGGACTTTAGCATAGCGTATCACCCACAGACTGATGGCCAAACAGAACGCTTGAACCAAGTTCTAGAGGACATGTTGCGGGCATGTTACCCTTGA

mRNA sequence

ATGGTCACCGCCTATAGGGTAAAGGATGGTCACATAGTAATATCAGGGGTTAGCTTGGGTGTAGACTTGATGGTGGTCGATATGACCGTGTACGATGTAATCCTAGACATGGACTGGTTGGCGGAAAATCATGCTAGCATAGACTGTCACAAGAGGGAGGTCATTTTCACACCACCATCGAGGACCAGATTCAGGTTCAGGGGCACCAGTCTGGGAACGATGCCCAAGGTGATATCGATGATGAAGGCGAAGAAGCTGGTCCGGCACGGGGCCTGGGCGATACTAGCCATCATGGCAAGGATCAAGGAAGAAGGCGTCCCCCTAACCGAGTTTCCAATAGTGAGTGAGTTCCCAGATGTGTTTCCAGAGGACCTACCGGGGACTCCCCCATCCCGAGATGTCGACTTTGCTATAGAACTGGAATCAGGGACCGGCCCCATATCCAAGGCATCGTACCGCATGGCACCAGCAGAGCTGGAGGAACTTAAGGACGGTTCCATGCGCTTGTTCGTCGATTACAGGGAACTGAATAAGAGGACAGTGAAGAACAGGTACCCCCTCCCACACATCGAAGACTTATTTGATCAGCTCAGAGAGGCCACGATGTTTTCAAAGATCGATCTTCGTTCAGGACATGTGATATCGGTAGAAGGAGTGTCAGTTGACCCTGCCAAGGTGGAGGCGTTCACCGGCTGGGCCCGTCCAACTACTGTGACTGAGGTACGGAGTTTTCTGGGTCTGGCAGGCTACTACCGTTGCTTCGTGCAGGACTTCTCCAAGATAGCGACACCTCTCTCACGACTGACTCGAAAGGTTACGGCGTTCGTATGGACCGAGGAGTGCGAGGCAAGCTTCCGGGATCTGGACGAGAGACTGGAGACTGCACTCGTGCTCACAATGCCCGATGGTACAGGGAACTACGTCATTTTTAGTGATGCTTCCAAAAAGAGCCTAGGGTGCGTGTTGATGCAACGTGGGAGGGTTATTGCCTACGCATCCAGACAACTGAAGGACTATGAAAAGAACTACCTTGTGCATGACTTGGAACTGGCAGCAGTAGTCTTCGCATTAAAGATATGGCGACACTACTTGTATGGGGAGAGGACTCAAATCTATACCGATCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGAAATTGAATATGAGGCAACAATGGTGGCTTCAGCTAGTCAAGAATTATGATATAGATATCCAGTACTACACCAGGAAGGCCAACGTAGTCATAGATGCCCTGAGTAAGAAGGCAGCGCATTCGTCGGCACTATTCATGAAAGAACCCCGAGTGCAGGTAGACTTCGAGCGAGCGGGGATAGCAGTAGCACTGAAGGGTATTAAGGCGCAACTGCCTCGACTAATGTTGCAACCCACCCTTCGGCAGAGAATCATTGAGGCGCAGGCAAGGGACTCCGGTTTAACGAGGGCACTTAACAAAAGACAGAGACCAGCAGGATTACTACAGCCCCTCAACATACCAGAGTGGAAGTGGGAGAACATCGCCATGGATTTCATAGTGGGCCTACCCAAAACGCTAAAGGGTTACACGGTCATATGGGTGGTCGTGGACAGATTAACGAAGTCAGCACATTTCCTCCCCGGCAAGGCCACCTATATAGTGGACATGTGGGCACAACTATACATGAAGGAAATCGTCAGGTTGCATGGGGTCCCCATGTCGATTGTATCAGACCGAGATCCACGGTTTACTTCGGCATTTTGGCGTGGACTCCAGAAGGCGTTGGGCACTCGACTGGACTTTAGCATAGCGTATCACCCACAGACTGATGGCCAAACAGAACGCTTGAACCAAGTTCTAGAGGACATGTTGCGGGCATGTTACCCTTGA

Coding sequence (CDS)

ATGGTCACCGCCTATAGGGTAAAGGATGGTCACATAGTAATATCAGGGGTTAGCTTGGGTGTAGACTTGATGGTGGTCGATATGACCGTGTACGATGTAATCCTAGACATGGACTGGTTGGCGGAAAATCATGCTAGCATAGACTGTCACAAGAGGGAGGTCATTTTCACACCACCATCGAGGACCAGATTCAGGTTCAGGGGCACCAGTCTGGGAACGATGCCCAAGGTGATATCGATGATGAAGGCGAAGAAGCTGGTCCGGCACGGGGCCTGGGCGATACTAGCCATCATGGCAAGGATCAAGGAAGAAGGCGTCCCCCTAACCGAGTTTCCAATAGTGAGTGAGTTCCCAGATGTGTTTCCAGAGGACCTACCGGGGACTCCCCCATCCCGAGATGTCGACTTTGCTATAGAACTGGAATCAGGGACCGGCCCCATATCCAAGGCATCGTACCGCATGGCACCAGCAGAGCTGGAGGAACTTAAGGACGGTTCCATGCGCTTGTTCGTCGATTACAGGGAACTGAATAAGAGGACAGTGAAGAACAGGTACCCCCTCCCACACATCGAAGACTTATTTGATCAGCTCAGAGAGGCCACGATGTTTTCAAAGATCGATCTTCGTTCAGGACATGTGATATCGGTAGAAGGAGTGTCAGTTGACCCTGCCAAGGTGGAGGCGTTCACCGGCTGGGCCCGTCCAACTACTGTGACTGAGGTACGGAGTTTTCTGGGTCTGGCAGGCTACTACCGTTGCTTCGTGCAGGACTTCTCCAAGATAGCGACACCTCTCTCACGACTGACTCGAAAGGTTACGGCGTTCGTATGGACCGAGGAGTGCGAGGCAAGCTTCCGGGATCTGGACGAGAGACTGGAGACTGCACTCGTGCTCACAATGCCCGATGGTACAGGGAACTACGTCATTTTTAGTGATGCTTCCAAAAAGAGCCTAGGGTGCGTGTTGATGCAACGTGGGAGGGTTATTGCCTACGCATCCAGACAACTGAAGGACTATGAAAAGAACTACCTTGTGCATGACTTGGAACTGGCAGCAGTAGTCTTCGCATTAAAGATATGGCGACACTACTTGTATGGGGAGAGGACTCAAATCTATACCGATCATAAGAGCCTGAAGTACTTCTTCACCCAGAAGAAATTGAATATGAGGCAACAATGGTGGCTTCAGCTAGTCAAGAATTATGATATAGATATCCAGTACTACACCAGGAAGGCCAACGTAGTCATAGATGCCCTGAGTAAGAAGGCAGCGCATTCGTCGGCACTATTCATGAAAGAACCCCGAGTGCAGGTAGACTTCGAGCGAGCGGGGATAGCAGTAGCACTGAAGGGTATTAAGGCGCAACTGCCTCGACTAATGTTGCAACCCACCCTTCGGCAGAGAATCATTGAGGCGCAGGCAAGGGACTCCGGTTTAACGAGGGCACTTAACAAAAGACAGAGACCAGCAGGATTACTACAGCCCCTCAACATACCAGAGTGGAAGTGGGAGAACATCGCCATGGATTTCATAGTGGGCCTACCCAAAACGCTAAAGGGTTACACGGTCATATGGGTGGTCGTGGACAGATTAACGAAGTCAGCACATTTCCTCCCCGGCAAGGCCACCTATATAGTGGACATGTGGGCACAACTATACATGAAGGAAATCGTCAGGTTGCATGGGGTCCCCATGTCGATTGTATCAGACCGAGATCCACGGTTTACTTCGGCATTTTGGCGTGGACTCCAGAAGGCGTTGGGCACTCGACTGGACTTTAGCATAGCGTATCACCCACAGACTGATGGCCAAACAGAACGCTTGAACCAAGTTCTAGAGGACATGTTGCGGGCATGTTACCCTTGA

Protein sequence

MVTAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSGHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTSAFWRGLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRACYP
Homology
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BLAST of CmaCh00G001860 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-35
Identity = 78/212 (36.79%), Postives = 124/212 (58.49%), Query Frame = 1 

Query: 211 GHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTR 270
           GHV++ +G+  +P K+EA   +  PT   E+++FLGL GYYR F+ +F+ IA P+++  +
Sbjct: 412 GHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLK 471

Query: 271 KVTAFVWTE-ECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVI 330
           K      T  E +++F+ L   +    +L +PD T  + + +DAS  +LG VL Q G  +
Sbjct: 472 KNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPL 531

Query: 331 AYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNM 390
           +Y SR L ++E NY   + EL A+V+A K +RHYL G   +I +DH+ L + +  K  N 
Sbjct: 532 SYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNS 591

Query: 391 RQQWWLQLVKNYDIDIQYYTRKANVVIDALSK 422
           +   W   +  +D DI+Y   K N V DALS+
Sbjct: 592 KLTRWRVKLSEFDFDIKYIKGKENCVADALSR 623

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BLAST of CmaCh00G001860 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-33
Identity = 81/227 (35.68%), Postives = 129/227 (56.83%), Query Frame = 1 

Query: 211 GHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTR 270
           G++++ +G+  DP KV A +    PT+V E++ FLG+  YYR F+QD++K+A PL+ LTR
Sbjct: 328 GYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLTNLTR 387

Query: 271 KVTAFVWT-----------EECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLG 330
            + A + +           E    SF DL   L ++ +L  P  T  + + +DAS  ++G
Sbjct: 388 GLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASNWAIG 447

Query: 331 CVLMQ----RGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERT-QIYTD 390
            VL Q    R R IAY SR L   E+NY   + E+ A++++L   R YLYG  T ++YTD
Sbjct: 448 AVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIKVYTD 507

Query: 391 HKSLKYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSK 422
           H+ L +    +  N + + W   ++ Y+ ++ Y   K+NVV DALS+
Sbjct: 508 HQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554

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BLAST of CmaCh00G001860 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-32
Identity = 77/213 (36.15%), Postives = 122/213 (57.28%), Query Frame = 1 

Query: 211 GHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTR 270
           GH+++ +G+  +P KV+A   +  PT   E+R+FLGL GYYR F+ +++ IA P++   +
Sbjct: 411 GHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLK 470

Query: 271 KVTAFVWTEECE--ASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRV 330
           K T  + T++ E   +F  L   +    +L +PD    +V+ +DAS  +LG VL Q G  
Sbjct: 471 KRTK-IDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNGHP 530

Query: 331 IAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLN 390
           I++ SR L D+E NY   + EL A+V+A K +RHYL G +  I +DH+ L++    K+  
Sbjct: 531 ISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPG 590

Query: 391 MRQQWWLQLVKNYDIDIQYYTRKANVVIDALSK 422
            + + W   +  Y   I Y   K N V DALS+
Sbjct: 591 AKLERWRVRLSEYQFKIDYIKGKENSVADALSR 622

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BLAST of CmaCh00G001860 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-29
Identity = 82/239 (34.31%), Postives = 125/239 (52.30%), Query Frame = 1 

Query: 198 REATMFSKIDLRS-GHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQ 257
           +E T F K  +   G ++S +G   DP KV+A   +  P  V +VRSFLGLA YYR F++
Sbjct: 373 QEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIK 432

Query: 258 DFSKIATPLSRLTRKVTAFVWTE-------ECEASFRDLDERLETAL-----VLTMPDGT 317
           DF+ IA P++ + +     V          E   + R+  +RL   L     +L  PD  
Sbjct: 433 DFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFK 492

Query: 318 GNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYL 377
             + + +DAS   +G VL Q GR I   SR LK  E+NY  ++ EL A+V+AL   +++L
Sbjct: 493 KPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFL 552

Query: 378 YGER-TQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKK 423
           YG R   I+TDH+ L +    +  N + + W   +  ++  + Y   K N V DALS++
Sbjct: 553 YGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 611

[Close]
BLAST of CmaCh00G001860 vs. Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.1e-25
Identity = 67/215 (31.16%), Postives = 110/215 (51.16%), Query Frame = 1 

Query: 211 GHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTR 270
           GH  + +G+  D  K +    +  P      R F+    YYR F+++F+  +  ++RL +
Sbjct: 520 GHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYSRHITRLCK 579

Query: 271 KVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGR--- 330
           K   F WT+EC+ +F  L  +L    +L  PD +  + I +DASK++ G VL Q      
Sbjct: 580 KNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQ 639

Query: 331 -VIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKK 390
             +AYASR     E N    + ELAA+ +A+  +R Y+YG+   + TDH+ L Y F+   
Sbjct: 640 LPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVN 699

Query: 391 LNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSK 422
            + +       ++ Y+  ++Y   K N V DALS+
Sbjct: 700 PSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSR 734

[Close]
BLAST of CmaCh00G001860 vs. TrEMBL
Match: M5VT03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 6.5e-155
Identity = 323/718 (44.99%), Postives = 419/718 (58.36%), Query Frame = 1 

Query: 3    TAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRT 62
            T YR  D  +++  V L  DL+ + M   DVIL MDWLA + AS+DC ++EV+F  P R 
Sbjct: 380  TVYR--DSTVLVGNVFLEADLIPLGMVDLDVILGMDWLARHRASVDCFRKEVVFRSPGRP 439

Query: 63   RFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFP 122
               F G        +IS M AK+L+R G    +A +   ++ G+ L + P+V +FPDVFP
Sbjct: 440  EVTFYGERRVLPSCLISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPVVQDFPDVFP 499

Query: 123  EDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELK------------------- 182
            EDLPG PP R+++F IEL  GT PIS+A YRMAPAEL ELK                   
Sbjct: 500  EDLPGLPPQREIEFVIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPW 559

Query: 183  ----------DGSMRLFVDYRE-----------------------------LNK--RTVK 242
                      DG MRL VDYR+                             +N+  R   
Sbjct: 560  GAPILFVKKKDGIMRLCVDYRQLNKITVRNRYPLPRIDDLFDQLKAAFMDLMNRVFRGYL 619

Query: 243  NRYPLPHIEDLF-----------------DQLREATMFSK-------IDLRS--GHVISV 302
            +R+ +  I+D+                    LR   +++K       +D  S  GHVIS 
Sbjct: 620  DRFVIVFIDDILVYSKSQKAHMKHLNLVLRTLRRRQLYAKFSKCQFWLDRVSFLGHVISA 679

Query: 303  EGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFV 362
            EG+ VDP K+EA   W RPT+VTE+RSFLGLAGYYR FV+ FS IATPL+ LTRK     
Sbjct: 680  EGIYVDPQKIEAVVNWLRPTSVTEIRSFLGLAGYYRRFVEGFSTIATPLTYLTRKGVK-- 739

Query: 363  WTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQL 422
                                +  +PD +GN+VI+SDAS+  LGCVLMQ GRVIAYASRQL
Sbjct: 740  --------------------LCALPDDSGNFVIYSDASQHGLGCVLMQHGRVIAYASRQL 799

Query: 423  KDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQ 482
            K +E NY VHDLELAAVVFALKIWRHYLYGE  QI+TDHKSLKY FTQK+LN+RQ+ WL+
Sbjct: 800  KKHELNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHKSLKYLFTQKELNLRQRRWLE 859

Query: 483  LVKNYDIDIQYYTRKANVVIDA-LSKKAAHSSALFMKEPRVQVDFERA----------GI 542
            L+K+YD  I+++  +ANVV +   +  +  +    M   R+ V  + A            
Sbjct: 860  LIKDYDCTIEHHPGRANVVANGDRTDCSVRNDEALMVGNRLYVPNDEALKREILEEAHES 919

Query: 543  AVALKGIKAQLPRLMLQ----PTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEW 602
            A A+     ++   + +    P +++ I E   R     +   +RQ+P+GLLQPL IPEW
Sbjct: 920  AFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQQVKAERQKPSGLLQPLPIPEW 979

Query: 603  KWENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLH 620
            KWE I MDF+  LP+T   +  +WV+VDRLTKSAHFLP +A Y ++  A++++ EIVRLH
Sbjct: 980  KWERITMDFVFKLPRTHSKHDGVWVIVDRLTKSAHFLPVRANYSLNKLAKIFIDEIVRLH 1039

[Close]
BLAST of CmaCh00G001860 vs. TrEMBL
Match: Q6MWH2_ORYSJ (B1160F02.4 protein OS=Oryza sativa subsp. japonica GN=B1160F02.4 PE=4 SV=1)

HSP 1 Score: 545.0 bits (1403), Expect = 1.1e-151
Identity = 303/663 (45.70%), Postives = 396/663 (59.73%), Query Frame = 1 

Query: 12   IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFT--PPSRTRFRFRGT 71
            I I  +    DL+++D    DVIL M+WLA+    +DC +R V     P     F    T
Sbjct: 756  IEIQRIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPKQPVVFFAPPT 815

Query: 72   SLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTP 131
            S+G+                            +   + L+E PIV EF DVFPE+LPG P
Sbjct: 816  SVGSS---------------------------ELHQIGLSEIPIVREFGDVFPEELPGMP 875

Query: 132  PSRDVDFAIELESGTGPISKASYRMAPAELEELK-------------------------- 191
            P R+++F I+L  GT P  K  YRMA  EL E+K                          
Sbjct: 876  PKREIEFRIDLAPGTTPQYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFV 935

Query: 192  ---DGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG--------- 251
               D + R+ VDYR LN+ T+KN+YPLP I+DLFDQL+ AT+FSKIDLRSG         
Sbjct: 936  EKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREE 995

Query: 252  -------------HVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDF 311
                         HVIS +GV+VDP  V A T W +P TVT++R+FLGLAGYYR F+++F
Sbjct: 996  DILRLHSPRDTDWHVISAKGVAVDPETVTAVTDWKQPKTVTQIRNFLGLAGYYRRFIENF 1055

Query: 312  SKIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSL 371
            SKIA P+++L +K   FVW+ +CE +F+ L E+L ++ VL +PD   +++++ DAS++ L
Sbjct: 1056 SKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGL 1115

Query: 372  GCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSL 431
            GC+L Q G V+AYASRQL+ +E NY  HDLELAAVV AL+IWRHYL G R +IY DHKSL
Sbjct: 1116 GCLLKQEGHVVAYASRQLRPHEGNYPTHDLELAAVVHALQIWRHYLIGNRCEIYIDHKSL 1175

Query: 432  KYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKKAAHSS--ALFMKEPRV 491
            KY FTQ  LN+RQ+ WL+L+K+YD+ I Y+       +  L  + AH S  ++     ++
Sbjct: 1176 KYIFTQSDLNLRQRRWLELIKDYDVGIHYHPDDRE--LKKLILQEAHESPYSIHPGSTKM 1235

Query: 492  QVDFERAGIAVALKGIKAQLPRLMLQPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPL 551
             +D +     V++K                + I+E  A      R   + QRPAGLLQPL
Sbjct: 1236 YLDLKEKYWWVSMK----------------REIVEFVALCDVCQRVKAEHQRPAGLLQPL 1295

Query: 552  NIPEWKWENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKE 611
             +PEWKW+ I MDFI GLPKT  GY  IWVVVD+LTK A F+P K TY  +  A+LY   
Sbjct: 1296 QVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDQLTKVARFIPVKTTYGGNKLAELYFAR 1355

Query: 612  IVRLHGVPMSIVSDRDPRFTSAFWRGLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDML 620
            IV LHGVP  IVSDR  +FTS FW+ LQ+ L T+L+FS AYHPQTDGQTERLNQ+LEDML
Sbjct: 1356 IVSLHGVPKKIVSDRGSQFTSHFWKKLQEELRTQLNFSTAYHPQTDGQTERLNQILEDML 1373

[Close]
BLAST of CmaCh00G001860 vs. TrEMBL
Match: A0A151TR51_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_008725 PE=4 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.0e-147
Identity = 294/638 (46.08%), Postives = 390/638 (61.13%), Query Frame = 1 

Query: 12  IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSL 71
           + I G    VDL+ + ++  DVIL MDWL+ NH  ++C  + ++F  P            
Sbjct: 62  LTIEGRDFMVDLICLPLSQLDVILGMDWLSSNHVLLNCASKSIVFGEPVEK--------- 121

Query: 72  GTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPS 131
                 ++  + K  ++  A   + + +   E+ V + E P+V +F DVF  D+   PP 
Sbjct: 122 -VSKDYLTANQVKVSLQEDAQVYMLLASLDSEKNVLVNELPVVCDFLDVF-SDVSSLPPR 181

Query: 132 RDVDFAIELESGTGPISKASYRMAPAELEELK---------------------------- 191
           R+  F+I+L  GTGPIS A YRM+P EL ++K                            
Sbjct: 182 REEKFSIDLVPGTGPISIAPYRMSPIELVDIKKQIEDLLEKGFVRPSVSPWGAPVLLVTK 241

Query: 192 -DGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG-HVISVEGVSV 251
            DGSMRL VDYR+LNK T+KN+YPLP I+DL DQL  A +FSKIDLRSG H I V+   V
Sbjct: 242 KDGSMRLCVDYRKLNKVTIKNKYPLPRIDDLMDQLVGACVFSKIDLRSGYHQIRVKSEDV 301

Query: 252 DPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEEC 311
                        P T    R      G+Y  F++ FSK+A PL+ LTRK   FVW  +C
Sbjct: 302 -------------PKTAFRTRY-----GHYERFIKGFSKLALPLTSLTRKGVMFVWDSKC 361

Query: 312 EASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEK 371
           E SFR L E+L +A VL +PD +  +V++ DASK  LG VLMQ G V++YASRQLK +E+
Sbjct: 362 EDSFRALKEKLTSAPVLVLPDLSKTFVVYCDASKMGLGGVLMQEGMVVSYASRQLKVHER 421

Query: 372 NYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNY 431
           NY  HDLELAAVVF LKIWRHYLYG + ++++DHKSL+Y F QK+LNMRQ  WL+ +K+Y
Sbjct: 422 NYPTHDLELAAVVFTLKIWRHYLYGSKFEVFSDHKSLRYLFDQKELNMRQWRWLEFLKDY 481

Query: 432 DIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLML 491
           D D+ Y+  KANVV+DAL  K  H S L       ++  +              L ++  
Sbjct: 482 DFDLSYHPGKANVVVDAL--KEGHRSKLSFHPGATKMYHD--------------LRKMFW 541

Query: 492 QPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKTLKGY 551
            P +++ I E  +      +A  + Q+P+GLLQPL+IPEWKW++I+MDF+V LP+T KG+
Sbjct: 542 WPRMKKDIAEFVSACLVCQKAKIEHQKPSGLLQPLSIPEWKWDSISMDFVVALPRTRKGH 601

Query: 552 TVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTSAFWR 611
             IWV+VD+LTKSAHFLP    Y ++  A+LY+ EIVRLHG+P SIVSDRDPRFTS FW 
Sbjct: 602 DSIWVIVDKLTKSAHFLPVNIRYSLEKLARLYIDEIVRLHGIPSSIVSDRDPRFTSRFWE 654

Query: 612 GLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRAC 620
            LQ+ALGT+L  S A HPQTDGQTER  Q LED+LRAC
Sbjct: 662 SLQQALGTQLRLSSACHPQTDGQTERTIQSLEDLLRAC 654

[Close]
BLAST of CmaCh00G001860 vs. TrEMBL
Match: Q10GE4_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os03g43250 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 3.2e-146
Identity = 298/642 (46.42%), Postives = 385/642 (59.97%), Query Frame = 1 

Query: 12  IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSL 71
           I I G+    DL+++D    DVIL M+WLA+    +DC +R V           +RG   
Sbjct: 239 IEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTL---------YRGLE- 298

Query: 72  GTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPS 131
              P V              +A    +   +   + L+E PIV EF DVFPE+LPG PP 
Sbjct: 299 --QPVVF-------------FAPPTSVGSSELHQIGLSETPIVREFRDVFPEELPGMPPK 358

Query: 132 RDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRYPLPHIE 191
           R+++F I+L  GT P+ K  YRMA  EL E+K           EL ++  +     P   
Sbjct: 359 REIEFRIDLAPGTTPLYKRPYRMAANELAEVKK-------QLEELKEKGGRPSAASPSGV 418

Query: 192 DLFDQLREATMFSKIDL------RSGHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFL 251
                       SK +         GHVIS +GV+VDP  V A T W +P  VT+VRSFL
Sbjct: 419 GKVAGTPTVCKLSKCEFWLSEVKFLGHVISTKGVAVDPETVTAVTDWKQPKIVTQVRSFL 478

Query: 252 GLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTG 311
           GLAGYYR F+++FSKIA P+++L +K   FVW+ +CE +F+ L E+L ++ VL +PD   
Sbjct: 479 GLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLHEKLVSSPVLILPDTRK 538

Query: 312 NYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLY 371
           +Y+++ DAS++ LGCVLMQ G V+AYASRQL+ +E NY  HDLELAAVV ALKIWRHYL 
Sbjct: 539 DYLVYCDASRQGLGCVLMQEGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLI 598

Query: 372 GERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKKA-A 431
           G R +IYTDHKSLKY FTQ  LN+RQ+ WL+L+K+YD+ I+Y+  KANVV DALS+K+  
Sbjct: 599 GNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIRYHPGKANVVADALSRKSRC 658

Query: 432 HSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTLRQRIIEAQARD-------- 491
           ++  +    P +    E   +++  +G  A L     +PTL  +I EAQ  D        
Sbjct: 659 NTLGVRGIPPELHQQMEALNLSIVGRGFLAMLE---AKPTLLDQIREAQKNDPDMHGILK 718

Query: 492 -------------------SGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKT 551
                              +G  R   + QRPA LLQPL +PEWKW+ I MDFI GLPKT
Sbjct: 719 NMKQGKAAGFTEDEHGTLWNGNRRVKAEHQRPARLLQPLQVPEWKWDEIGMDFITGLPKT 778

Query: 552 LKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTS 611
             G+  IWVVVDRLTK A F+P K TY  +  A+LY   IV LHGVP  IVSDR  +FTS
Sbjct: 779 QGGHDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTS 838

Query: 612 AFWRGLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRAC 620
            FW+ LQ+ LGTRL+FS AYHPQTDGQTERLNQ+LEDMLRAC
Sbjct: 839 HFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRAC 845

[Close]
BLAST of CmaCh00G001860 vs. TrEMBL
Match: A0A151RV44_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_031994 PE=4 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 4.7e-145
Identity = 287/638 (44.98%), Postives = 389/638 (60.97%), Query Frame = 1 

Query: 12  IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSL 71
           IV++     V+L+ + +   D+IL MDWL+ N   IDC  R +IF P             
Sbjct: 299 IVVNWKKYKVNLICLPLVDIDIILGMDWLSANRILIDCANRRLIF-PQEEDEL------- 358

Query: 72  GTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPS 131
                +IS  +A+ L+R GA   L + A   E    + E  +V +F +VFP+++PG PP+
Sbjct: 359 -----LISASQAESLLRDGAECCLLLAAMNVETERVIAEIDVVRDFAEVFPDEVPGLPPT 418

Query: 132 RDVDFAIELESGTGPISKASYRMAPAELEELK---------------------------- 191
           R+++F+I+L  G GP+S A YRMAPAEL ELK                            
Sbjct: 419 REMEFSIDLVPGVGPVSVAPYRMAPAELVELKGQLEDLLEKQLVRPSVSPWGAPVLLVKK 478

Query: 192 -DGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG-HVISVEGVSV 251
            DG  RL VDYR+LNK T+KN+YPLP I+DL DQL+ A++FSKIDLRSG H I V+   +
Sbjct: 479 KDGGSRLCVDYRQLNKLTIKNKYPLPRIDDLMDQLKGASIFSKIDLRSGYHQIRVKDGDI 538

Query: 252 DPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEEC 311
                        P     + SF+GL GYYR F++ FSKI  PL++LTRK   F+WT+ C
Sbjct: 539 -------------PKIAFRI-SFVGLVGYYRRFIEGFSKIVAPLTQLTRKEQPFIWTDAC 598

Query: 312 EASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEK 371
           E SF +L  RL T+ VL +PD    + ++ DAS + LGCVLMQ  +V+AYASRQLK++E+
Sbjct: 599 ERSFEELKRRLTTSPVLVLPDSGEPFDVYCDASHQGLGCVLMQHRKVVAYASRQLKNHER 658

Query: 372 NYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNY 431
           NY  HDLELAAVVFALKIWRHYLYG +  +++DHKSLKY F QK+LNMRQ+ W++ +K+Y
Sbjct: 659 NYPTHDLELAAVVFALKIWRHYLYGAQFSVFSDHKSLKYLFNQKELNMRQRRWMEFLKDY 718

Query: 432 DIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLML 491
           +     +  +  +  DA  K+A                  R  I   +  +   L +   
Sbjct: 719 EFQ---FKGRIFLPQDAELKRAVLEEG----------HKSRLSIHPGMTKMYQDLKKTFW 778

Query: 492 QPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKTLKGY 551
              +++ I+E  A      +A  + Q+P+GL+Q + IPEWKW+NI MDFIVGLP++ +  
Sbjct: 779 WSGMKREIVEYVAACLTCQKAKVEHQKPSGLMQQIEIPEWKWDNITMDFIVGLPRSTRNS 838

Query: 552 TVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTSAFWR 611
             IWVVVDRLTK AHFLP    + ++   QLY++EIVRLHGVP SI+SDRD RFTS FW+
Sbjct: 839 DAIWVVVDRLTKCAHFLPVNIKWSLEKLMQLYVREIVRLHGVPSSIISDRDLRFTSRFWQ 896

Query: 612 GLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRAC 620
            L +ALGT+L  S AYHPQT+GQ++R  Q LED+LRAC
Sbjct: 899 SLHEALGTKLKLSSAYHPQTNGQSKRTIQSLEDLLRAC 896

[Close]
BLAST of CmaCh00G001860 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-19
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 212 HVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRK 271
           H+IS EGVS DPAK+EA  GW  P   TE+R FLGL GYYR FV+++ KI  PL+ L +K
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK 96

Query: 272 VTAFVWTEECEASFRDLDERLETALVLTMPD 303
             +  WTE    +F+ L   + T  VL +PD
Sbjct: 97  -NSLKWTEMAALAFKALKGAVTTLPVLALPD 126

[Close]
BLAST of CmaCh00G001860 vs. NCBI nr
Match: gi|595790143|ref|XP_007198824.1| (hypothetical protein PRUPE_ppb020037mg [Prunus persica])

HSP 1 Score: 555.8 bits (1431), Expect = 9.3e-155
Identity = 323/718 (44.99%), Postives = 419/718 (58.36%), Query Frame = 1 

Query: 3    TAYRVKDGHIVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRT 62
            T YR  D  +++  V L  DL+ + M   DVIL MDWLA + AS+DC ++EV+F  P R 
Sbjct: 380  TVYR--DSTVLVGNVFLEADLIPLGMVDLDVILGMDWLARHRASVDCFRKEVVFRSPGRP 439

Query: 63   RFRFRGTSLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFP 122
               F G        +IS M AK+L+R G    +A +   ++ G+ L + P+V +FPDVFP
Sbjct: 440  EVTFYGERRVLPSCLISAMTAKRLLRKGCSGYIAHVIDTRDNGLRLEDIPVVQDFPDVFP 499

Query: 123  EDLPGTPPSRDVDFAIELESGTGPISKASYRMAPAELEELK------------------- 182
            EDLPG PP R+++F IEL  GT PIS+A YRMAPAEL ELK                   
Sbjct: 500  EDLPGLPPQREIEFVIELAPGTNPISQAPYRMAPAELRELKTQLQELVDKGFIRPSFSPW 559

Query: 183  ----------DGSMRLFVDYRE-----------------------------LNK--RTVK 242
                      DG MRL VDYR+                             +N+  R   
Sbjct: 560  GAPILFVKKKDGIMRLCVDYRQLNKITVRNRYPLPRIDDLFDQLKAAFMDLMNRVFRGYL 619

Query: 243  NRYPLPHIEDLF-----------------DQLREATMFSK-------IDLRS--GHVISV 302
            +R+ +  I+D+                    LR   +++K       +D  S  GHVIS 
Sbjct: 620  DRFVIVFIDDILVYSKSQKAHMKHLNLVLRTLRRRQLYAKFSKCQFWLDRVSFLGHVISA 679

Query: 303  EGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFV 362
            EG+ VDP K+EA   W RPT+VTE+RSFLGLAGYYR FV+ FS IATPL+ LTRK     
Sbjct: 680  EGIYVDPQKIEAVVNWLRPTSVTEIRSFLGLAGYYRRFVEGFSTIATPLTYLTRKGVK-- 739

Query: 363  WTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQL 422
                                +  +PD +GN+VI+SDAS+  LGCVLMQ GRVIAYASRQL
Sbjct: 740  --------------------LCALPDDSGNFVIYSDASQHGLGCVLMQHGRVIAYASRQL 799

Query: 423  KDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQ 482
            K +E NY VHDLELAAVVFALKIWRHYLYGE  QI+TDHKSLKY FTQK+LN+RQ+ WL+
Sbjct: 800  KKHELNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHKSLKYLFTQKELNLRQRRWLE 859

Query: 483  LVKNYDIDIQYYTRKANVVIDA-LSKKAAHSSALFMKEPRVQVDFERA----------GI 542
            L+K+YD  I+++  +ANVV +   +  +  +    M   R+ V  + A            
Sbjct: 860  LIKDYDCTIEHHPGRANVVANGDRTDCSVRNDEALMVGNRLYVPNDEALKREILEEAHES 919

Query: 543  AVALKGIKAQLPRLMLQ----PTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEW 602
            A A+     ++   + +    P +++ I E   R     +   +RQ+P+GLLQPL IPEW
Sbjct: 920  AFAMHPGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQQVKAERQKPSGLLQPLPIPEW 979

Query: 603  KWENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLH 620
            KWE I MDF+  LP+T   +  +WV+VDRLTKSAHFLP +A Y ++  A++++ EIVRLH
Sbjct: 980  KWERITMDFVFKLPRTHSKHDGVWVIVDRLTKSAHFLPVRANYSLNKLAKIFIDEIVRLH 1039

[Close]
BLAST of CmaCh00G001860 vs. NCBI nr
Match: gi|38567683|emb|CAE75973.1| (B1160F02.4 [Oryza sativa Japonica Group])

HSP 1 Score: 545.0 bits (1403), Expect = 1.6e-151
Identity = 303/663 (45.70%), Postives = 396/663 (59.73%), Query Frame = 1 

Query: 12   IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFT--PPSRTRFRFRGT 71
            I I  +    DL+++D    DVIL M+WLA+    +DC +R V     P     F    T
Sbjct: 756  IEIQRIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPKQPVVFFAPPT 815

Query: 72   SLGTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTP 131
            S+G+                            +   + L+E PIV EF DVFPE+LPG P
Sbjct: 816  SVGSS---------------------------ELHQIGLSEIPIVREFGDVFPEELPGMP 875

Query: 132  PSRDVDFAIELESGTGPISKASYRMAPAELEELK-------------------------- 191
            P R+++F I+L  GT P  K  YRMA  EL E+K                          
Sbjct: 876  PKREIEFRIDLAPGTTPQYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFV 935

Query: 192  ---DGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG--------- 251
               D + R+ VDYR LN+ T+KN+YPLP I+DLFDQL+ AT+FSKIDLRSG         
Sbjct: 936  EKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREE 995

Query: 252  -------------HVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDF 311
                         HVIS +GV+VDP  V A T W +P TVT++R+FLGLAGYYR F+++F
Sbjct: 996  DILRLHSPRDTDWHVISAKGVAVDPETVTAVTDWKQPKTVTQIRNFLGLAGYYRRFIENF 1055

Query: 312  SKIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSL 371
            SKIA P+++L +K   FVW+ +CE +F+ L E+L ++ VL +PD   +++++ DAS++ L
Sbjct: 1056 SKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGL 1115

Query: 372  GCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSL 431
            GC+L Q G V+AYASRQL+ +E NY  HDLELAAVV AL+IWRHYL G R +IY DHKSL
Sbjct: 1116 GCLLKQEGHVVAYASRQLRPHEGNYPTHDLELAAVVHALQIWRHYLIGNRCEIYIDHKSL 1175

Query: 432  KYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKKAAHSS--ALFMKEPRV 491
            KY FTQ  LN+RQ+ WL+L+K+YD+ I Y+       +  L  + AH S  ++     ++
Sbjct: 1176 KYIFTQSDLNLRQRRWLELIKDYDVGIHYHPDDRE--LKKLILQEAHESPYSIHPGSTKM 1235

Query: 492  QVDFERAGIAVALKGIKAQLPRLMLQPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPL 551
             +D +     V++K                + I+E  A      R   + QRPAGLLQPL
Sbjct: 1236 YLDLKEKYWWVSMK----------------REIVEFVALCDVCQRVKAEHQRPAGLLQPL 1295

Query: 552  NIPEWKWENIAMDFIVGLPKTLKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKE 611
             +PEWKW+ I MDFI GLPKT  GY  IWVVVD+LTK A F+P K TY  +  A+LY   
Sbjct: 1296 QVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDQLTKVARFIPVKTTYGGNKLAELYFAR 1355

Query: 612  IVRLHGVPMSIVSDRDPRFTSAFWRGLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDML 620
            IV LHGVP  IVSDR  +FTS FW+ LQ+ L T+L+FS AYHPQTDGQTERLNQ+LEDML
Sbjct: 1356 IVSLHGVPKKIVSDRGSQFTSHFWKKLQEELRTQLNFSTAYHPQTDGQTERLNQILEDML 1373

[Close]
BLAST of CmaCh00G001860 vs. NCBI nr
Match: gi|1012358348|gb|KYP69532.1| (Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan])

HSP 1 Score: 531.9 bits (1369), Expect = 1.4e-147
Identity = 294/638 (46.08%), Postives = 390/638 (61.13%), Query Frame = 1 

Query: 12  IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSL 71
           + I G    VDL+ + ++  DVIL MDWL+ NH  ++C  + ++F  P            
Sbjct: 62  LTIEGRDFMVDLICLPLSQLDVILGMDWLSSNHVLLNCASKSIVFGEPVEK--------- 121

Query: 72  GTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPS 131
                 ++  + K  ++  A   + + +   E+ V + E P+V +F DVF  D+   PP 
Sbjct: 122 -VSKDYLTANQVKVSLQEDAQVYMLLASLDSEKNVLVNELPVVCDFLDVF-SDVSSLPPR 181

Query: 132 RDVDFAIELESGTGPISKASYRMAPAELEELK---------------------------- 191
           R+  F+I+L  GTGPIS A YRM+P EL ++K                            
Sbjct: 182 REEKFSIDLVPGTGPISIAPYRMSPIELVDIKKQIEDLLEKGFVRPSVSPWGAPVLLVTK 241

Query: 192 -DGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG-HVISVEGVSV 251
            DGSMRL VDYR+LNK T+KN+YPLP I+DL DQL  A +FSKIDLRSG H I V+   V
Sbjct: 242 KDGSMRLCVDYRKLNKVTIKNKYPLPRIDDLMDQLVGACVFSKIDLRSGYHQIRVKSEDV 301

Query: 252 DPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEEC 311
                        P T    R      G+Y  F++ FSK+A PL+ LTRK   FVW  +C
Sbjct: 302 -------------PKTAFRTRY-----GHYERFIKGFSKLALPLTSLTRKGVMFVWDSKC 361

Query: 312 EASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEK 371
           E SFR L E+L +A VL +PD +  +V++ DASK  LG VLMQ G V++YASRQLK +E+
Sbjct: 362 EDSFRALKEKLTSAPVLVLPDLSKTFVVYCDASKMGLGGVLMQEGMVVSYASRQLKVHER 421

Query: 372 NYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNY 431
           NY  HDLELAAVVF LKIWRHYLYG + ++++DHKSL+Y F QK+LNMRQ  WL+ +K+Y
Sbjct: 422 NYPTHDLELAAVVFTLKIWRHYLYGSKFEVFSDHKSLRYLFDQKELNMRQWRWLEFLKDY 481

Query: 432 DIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLML 491
           D D+ Y+  KANVV+DAL  K  H S L       ++  +              L ++  
Sbjct: 482 DFDLSYHPGKANVVVDAL--KEGHRSKLSFHPGATKMYHD--------------LRKMFW 541

Query: 492 QPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKTLKGY 551
            P +++ I E  +      +A  + Q+P+GLLQPL+IPEWKW++I+MDF+V LP+T KG+
Sbjct: 542 WPRMKKDIAEFVSACLVCQKAKIEHQKPSGLLQPLSIPEWKWDSISMDFVVALPRTRKGH 601

Query: 552 TVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTSAFWR 611
             IWV+VD+LTKSAHFLP    Y ++  A+LY+ EIVRLHG+P SIVSDRDPRFTS FW 
Sbjct: 602 DSIWVIVDKLTKSAHFLPVNIRYSLEKLARLYIDEIVRLHGIPSSIVSDRDPRFTSRFWE 654

Query: 612 GLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRAC 620
            LQ+ALGT+L  S A HPQTDGQTER  Q LED+LRAC
Sbjct: 662 SLQQALGTQLRLSSACHPQTDGQTERTIQSLEDLLRAC 654

[Close]
BLAST of CmaCh00G001860 vs. NCBI nr
Match: gi|108709963|gb|ABF97758.1| (retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group])

HSP 1 Score: 526.9 bits (1356), Expect = 4.6e-146
Identity = 298/642 (46.42%), Postives = 385/642 (59.97%), Query Frame = 1 

Query: 12  IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSL 71
           I I G+    DL+++D    DVIL M+WLA+    +DC +R V           +RG   
Sbjct: 239 IEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTL---------YRGLE- 298

Query: 72  GTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPS 131
              P V              +A    +   +   + L+E PIV EF DVFPE+LPG PP 
Sbjct: 299 --QPVVF-------------FAPPTSVGSSELHQIGLSETPIVREFRDVFPEELPGMPPK 358

Query: 132 RDVDFAIELESGTGPISKASYRMAPAELEELKDGSMRLFVDYRELNKRTVKNRYPLPHIE 191
           R+++F I+L  GT P+ K  YRMA  EL E+K           EL ++  +     P   
Sbjct: 359 REIEFRIDLAPGTTPLYKRPYRMAANELAEVKK-------QLEELKEKGGRPSAASPSGV 418

Query: 192 DLFDQLREATMFSKIDL------RSGHVISVEGVSVDPAKVEAFTGWARPTTVTEVRSFL 251
                       SK +         GHVIS +GV+VDP  V A T W +P  VT+VRSFL
Sbjct: 419 GKVAGTPTVCKLSKCEFWLSEVKFLGHVISTKGVAVDPETVTAVTDWKQPKIVTQVRSFL 478

Query: 252 GLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEECEASFRDLDERLETALVLTMPDGTG 311
           GLAGYYR F+++FSKIA P+++L +K   FVW+ +CE +F+ L E+L ++ VL +PD   
Sbjct: 479 GLAGYYRRFIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLHEKLVSSPVLILPDTRK 538

Query: 312 NYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEKNYLVHDLELAAVVFALKIWRHYLY 371
           +Y+++ DAS++ LGCVLMQ G V+AYASRQL+ +E NY  HDLELAAVV ALKIWRHYL 
Sbjct: 539 DYLVYCDASRQGLGCVLMQEGHVVAYASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLI 598

Query: 372 GERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNYDIDIQYYTRKANVVIDALSKKA-A 431
           G R +IYTDHKSLKY FTQ  LN+RQ+ WL+L+K+YD+ I+Y+  KANVV DALS+K+  
Sbjct: 599 GNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIRYHPGKANVVADALSRKSRC 658

Query: 432 HSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLMLQPTLRQRIIEAQARD-------- 491
           ++  +    P +    E   +++  +G  A L     +PTL  +I EAQ  D        
Sbjct: 659 NTLGVRGIPPELHQQMEALNLSIVGRGFLAMLE---AKPTLLDQIREAQKNDPDMHGILK 718

Query: 492 -------------------SGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKT 551
                              +G  R   + QRPA LLQPL +PEWKW+ I MDFI GLPKT
Sbjct: 719 NMKQGKAAGFTEDEHGTLWNGNRRVKAEHQRPARLLQPLQVPEWKWDEIGMDFITGLPKT 778

Query: 552 LKGYTVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTS 611
             G+  IWVVVDRLTK A F+P K TY  +  A+LY   IV LHGVP  IVSDR  +FTS
Sbjct: 779 QGGHDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTS 838

Query: 612 AFWRGLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRAC 620
            FW+ LQ+ LGTRL+FS AYHPQTDGQTERLNQ+LEDMLRAC
Sbjct: 839 HFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRAC 845

[Close]
BLAST of CmaCh00G001860 vs. NCBI nr
Match: gi|1012335077|gb|KYP46418.1| (Retrotransposable element Tf2 [Cajanus cajan])

HSP 1 Score: 523.1 bits (1346), Expect = 6.7e-145
Identity = 287/638 (44.98%), Postives = 389/638 (60.97%), Query Frame = 1 

Query: 12  IVISGVSLGVDLMVVDMTVYDVILDMDWLAENHASIDCHKREVIFTPPSRTRFRFRGTSL 71
           IV++     V+L+ + +   D+IL MDWL+ N   IDC  R +IF P             
Sbjct: 299 IVVNWKKYKVNLICLPLVDIDIILGMDWLSANRILIDCANRRLIF-PQEEDEL------- 358

Query: 72  GTMPKVISMMKAKKLVRHGAWAILAIMARIKEEGVPLTEFPIVSEFPDVFPEDLPGTPPS 131
                +IS  +A+ L+R GA   L + A   E    + E  +V +F +VFP+++PG PP+
Sbjct: 359 -----LISASQAESLLRDGAECCLLLAAMNVETERVIAEIDVVRDFAEVFPDEVPGLPPT 418

Query: 132 RDVDFAIELESGTGPISKASYRMAPAELEELK---------------------------- 191
           R+++F+I+L  G GP+S A YRMAPAEL ELK                            
Sbjct: 419 REMEFSIDLVPGVGPVSVAPYRMAPAELVELKGQLEDLLEKQLVRPSVSPWGAPVLLVKK 478

Query: 192 -DGSMRLFVDYRELNKRTVKNRYPLPHIEDLFDQLREATMFSKIDLRSG-HVISVEGVSV 251
            DG  RL VDYR+LNK T+KN+YPLP I+DL DQL+ A++FSKIDLRSG H I V+   +
Sbjct: 479 KDGGSRLCVDYRQLNKLTIKNKYPLPRIDDLMDQLKGASIFSKIDLRSGYHQIRVKDGDI 538

Query: 252 DPAKVEAFTGWARPTTVTEVRSFLGLAGYYRCFVQDFSKIATPLSRLTRKVTAFVWTEEC 311
                        P     + SF+GL GYYR F++ FSKI  PL++LTRK   F+WT+ C
Sbjct: 539 -------------PKIAFRI-SFVGLVGYYRRFIEGFSKIVAPLTQLTRKEQPFIWTDAC 598

Query: 312 EASFRDLDERLETALVLTMPDGTGNYVIFSDASKKSLGCVLMQRGRVIAYASRQLKDYEK 371
           E SF +L  RL T+ VL +PD    + ++ DAS + LGCVLMQ  +V+AYASRQLK++E+
Sbjct: 599 ERSFEELKRRLTTSPVLVLPDSGEPFDVYCDASHQGLGCVLMQHRKVVAYASRQLKNHER 658

Query: 372 NYLVHDLELAAVVFALKIWRHYLYGERTQIYTDHKSLKYFFTQKKLNMRQQWWLQLVKNY 431
           NY  HDLELAAVVFALKIWRHYLYG +  +++DHKSLKY F QK+LNMRQ+ W++ +K+Y
Sbjct: 659 NYPTHDLELAAVVFALKIWRHYLYGAQFSVFSDHKSLKYLFNQKELNMRQRRWMEFLKDY 718

Query: 432 DIDIQYYTRKANVVIDALSKKAAHSSALFMKEPRVQVDFERAGIAVALKGIKAQLPRLML 491
           +     +  +  +  DA  K+A                  R  I   +  +   L +   
Sbjct: 719 EFQ---FKGRIFLPQDAELKRAVLEEG----------HKSRLSIHPGMTKMYQDLKKTFW 778

Query: 492 QPTLRQRIIEAQARDSGLTRALNKRQRPAGLLQPLNIPEWKWENIAMDFIVGLPKTLKGY 551
              +++ I+E  A      +A  + Q+P+GL+Q + IPEWKW+NI MDFIVGLP++ +  
Sbjct: 779 WSGMKREIVEYVAACLTCQKAKVEHQKPSGLMQQIEIPEWKWDNITMDFIVGLPRSTRNS 838

Query: 552 TVIWVVVDRLTKSAHFLPGKATYIVDMWAQLYMKEIVRLHGVPMSIVSDRDPRFTSAFWR 611
             IWVVVDRLTK AHFLP    + ++   QLY++EIVRLHGVP SI+SDRD RFTS FW+
Sbjct: 839 DAIWVVVDRLTKCAHFLPVNIKWSLEKLMQLYVREIVRLHGVPSSIISDRDLRFTSRFWQ 896

Query: 612 GLQKALGTRLDFSIAYHPQTDGQTERLNQVLEDMLRAC 620
            L +ALGT+L  S AYHPQT+GQ++R  Q LED+LRAC
Sbjct: 899 SLHEALGTKLKLSSAYHPQTNGQSKRTIQSLEDLLRAC 896

The following BLAST results are available for this feature:
BLAST of CmaCh00G001860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL3_DROME2.5e-3536.79Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
POL5_DROME6.9e-3335.68Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
POL2_DROME1.5e-3236.15Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
POLY_DROME3.6e-2934.31Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
POL4_DROME3.1e-2531.16Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste... [more]
BLAST of CmaCh00G001860 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VT03_PRUPE6.5e-15544.99Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1[more]
Q6MWH2_ORYSJ1.1e-15145.70B1160F02.4 protein OS=Oryza sativa subsp. japonica GN=B1160F02.4 PE=4 SV=1[more]
A0A151TR51_CAJCA1.0e-14746.08Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_008725 PE=4 SV=1[more]
Q10GE4_ORYSJ3.2e-14646.42Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. jap... [more]
A0A151RV44_CAJCA4.7e-14544.98Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_031994 PE=4 SV=1[more]
BLAST of CmaCh00G001860 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00860.13.5e-1949.45ATMG00860.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmaCh00G001860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|595790143|ref|XP_007198824.1|9.3e-15544.99hypothetical protein PRUPE_ppb020037mg [Prunus persica][more]
gi|38567683|emb|CAE75973.1|1.6e-15145.70B1160F02.4 [Oryza sativa Japonica Group][more]
gi|1012358348|gb|KYP69532.1|1.4e-14746.08Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan][more]
gi|108709963|gb|ABF97758.1|4.6e-14646.42retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Gro... [more]
gi|1012335077|gb|KYP46418.1|6.7e-14544.98Retrotransposable element Tf2 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf
IPR013242Retroviral aspartyl protease
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G001860.1CmaCh00G001860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 506..615
score: 8.2
IPR001584Integrase, catalytic corePROFILEPS50994INTEGRASEcoord: 495..621
score: 17
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 305..401
score: 1.6E-4coord: 497..619
score: 3.1
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 496..619
score: 2.58
IPR013242Retroviral aspartyl proteasePFAMPF08284RVP_2coord: 6..57
score: 4.
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 163..200
score: 5.4
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 153..619
score: 1.8E
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 153..619
score: 1.8E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 113..407
score: 4.56

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G001860CmoCh00G000930Cucurbita moschata (Rifu)cmacmoB001
CmaCh00G001860CmoCh10G011150Cucurbita moschata (Rifu)cmacmoB002
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh00G001860CmaCh04G019870Cucurbita maxima (Rimu)cmacmaB018
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh00G001860Cucurbita maxima (Rimu)cmacmaB003