CmaCh20G006780 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G006780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA-binding domain CCCH-type zinc finger protein
LocationCma_Chr20 : 3114082 .. 3116541 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACAGAAACAAGATCATCAAGTAACAAATCGCTTGTTTCTTGAATCCTCAATTTCCTGTTTGTTCTTGATTCTTTCTTGTTCTTCTGTTTAGGATTTACGCAGCAAAATGGAATTACCAGAGCCAACAAATTTATTGTTTCAAAGAATCTGCGAATTGGATGCGGAATGTGCGACCACGATCATCGAGTACATTATTCTAAACACCGACGATCGCGACATGATCCGATTGGCCTTCTGTCCTGATACTGTTCTTCAATCTTTCATCGAAGACGCCAAATCAGACCTAGGAATCACTGAAATGGTGTCCTCTGCGCTATCCCCTGTTTCGATTTCCGACCCCTATTTGCCCTTATCCGTGTACCGCCGGGATCCTTCCTCTCGCTTATTCCCCTCCGAGTCCTACTCCGATTTGGACATTCAAAACCCTATGCAGTTTCTTTCCCTGGAGGACCAATTCGAATCGGTGAATACGGTTGGGCTGCGGAGGTTTCCGTTGAAGATTTGTCACTATTTCAGCAAAGGATATTGTAAGCACGGGAGTAAATGCAGGTATTTTCACGGGCAAGTTAAGGCAGCGCATGCGAATCACGAGCAGCGAGTTATCCTTCGTGGTAAGGCGCTTGAAAACCTGGAAATGGAAATCGTTGGGCTTCTGAAATCCCGACGAGGGAGTCCGATTTCTATTGCGTCTTTGCCGATTGTTTATTATGAATTCTACGGCAAGAATCTTCAAGCCGACGGGTATCTTACTGAAGGCCGTGGATTTGGGAGGGCTTGTTTTAGCCTCACTAGACTTCTCTCTAGTTTGAACTCCATTTGTGTTCTTGACAGGTTAATTCTCCGTTTCTTGTTTGTAATTTCATGGCTTCTTTGTTTGTTTCATCTCTAAATTTAGGGTTTCTTTTAGGCCACATGGGCAACATTCGTTAATCTTGGTGGAGGATATTGGAAAGTACATAGATTCCTCTGAAAACATTGCTCGACAGATTTACATTACATTTCCAGCTGCTAGTACTTTCACAGAACAGGATGTTTCAAGCTACTTCGAGTAAGAATGTGAAAATTTTATATGAATCGTGTTGATCTTGGGTGTGTTTATTTACTGAATTTATGCTGTTCTTTAAGCAAATATGGACCTGTTCAAGATGTCAAGATACCATACCAACAGAGCAGGATGTATGGATTTGTAACATTCGTTTATGCTGAGACAGCCAGACATGTTCTCTCAATCAGAACTACTCATTTTGTCTGTGGTGCTCAAGTTCTTGTCAAGCCTTACAAGGAGAAGTCTAGGCTTATACAGAGGTAACTTTAACAACATTTGGAGAAGGAAGGCTGGTTATTTTGTGAAAATTTGAACCTAGAACATGTTTTTTTGTTTGTACAGAAATAATGCTGAAAATAACAGAGAAGGAAACATGGAAGAAGCAAATTCTAGTAAGGAACAATGGTGCCATTTTGTTCTTTGTGAATCCCTTTTCTTGCATTTTTAAACCATATGCTCAAATTACTTGCAGTGCCAAGAGCCACAAATGATTCACTGACAAGGATTCTGATTGATGAAAATGAGCTACAGCGACAACGCTCTGAGCTTTTTTTGTCGTTCGTGGATTCAACAAACGAATGGACACATTCATCAGGTCTCGAAGCTTAATTTTCAAAAACTAAATCGTTATATCATACGAGACTATGATCTGTTTGGGTTTGGTTGTGGACTGTTTTTCTAATGGCATTGTGTTTAGGCAATGCTGAGGGGCCAGAACTGGAGGACCTGTTATCCACTGATCAGCAGCAGCATGAACAGCTACCTTCATTGACTGACCAAGCTGATGATGATAGGTTTGTTAAAAAGGCTATGTGATTTGTGGTTTACAATGCTGTTTGCTAAGCAATGTGATGACACTGTGGTTTTGCAGCACAACACAAGAGGTTGATCTACCGGAGAGCCTGTTTGCAGCTCCGACGAGGAGGTGAATTCGAACAGAGTTTATAGATGAAGATGTTGATAGAATAAGAAGAAGATACAAGACTACTACATTTTTCCCCCCCACAATCGGTTTAGTTTACGACAGATTTTATGTGTTTGTTTCTGGTTTCTAATAGGTGGAAGAAAAGTGGATTATTCTGAAAAGAGGAGTAGAGATGGATTTGTTTTGTTTTCCTAAGAAAAGTTTGCCATTTCCTAGAATAGTGTGTTTTGATCTGATCTACTACTTTTTTCTATTTAGTTCAAGGAAATGGTGTAAATGAAAGACATAATGTCTACTCAAATAAATGCTTTTACTTTCTATCCTCGATGGTATATATCATCTACTATTAGCAAATATCGAAGTAAGGTTAGATTCTCTCCATAATAGAAGGTGAGCGTGTCGAGCCGAGTGCTTCGGGTGACTTCTTTTGAAGGGATGTAAGTGTGAGACTGATGATAATACAGAAGGACCACCATCTTCAATCCCC

mRNA sequence

AACACAGAAACAAGATCATCAAGTAACAAATCGCTTGTTTCTTGAATCCTCAATTTCCTGTTTGTTCTTGATTCTTTCTTGTTCTTCTGTTTAGGATTTACGCAGCAAAATGGAATTACCAGAGCCAACAAATTTATTGTTTCAAAGAATCTGCGAATTGGATGCGGAATGTGCGACCACGATCATCGAGTACATTATTCTAAACACCGACGATCGCGACATGATCCGATTGGCCTTCTGTCCTGATACTGTTCTTCAATCTTTCATCGAAGACGCCAAATCAGACCTAGGAATCACTGAAATGGTGTCCTCTGCGCTATCCCCTGTTTCGATTTCCGACCCCTATTTGCCCTTATCCGTGTACCGCCGGGATCCTTCCTCTCGCTTATTCCCCTCCGAGTCCTACTCCGATTTGGACATTCAAAACCCTATGCAGTTTCTTTCCCTGGAGGACCAATTCGAATCGGTGAATACGGTTGGGCTGCGGAGGTTTCCGTTGAAGATTTGTCACTATTTCAGCAAAGGATATTGTAAGCACGGGAGTAAATGCAGGTATTTTCACGGGCAAGTTAAGGCAGCGCATGCGAATCACGAGCAGCGAGTTATCCTTCGTGGTAAGGCGCTTGAAAACCTGGAAATGGAAATCGTTGGGCTTCTGAAATCCCGACGAGGGAGTCCGATTTCTATTGCGTCTTTGCCGATTGTTTATTATGAATTCTACGGCAAGAATCTTCAAGCCGACGGGTATCTTACTGAAGGCCGTGGATTTGGGAGGGCTTGTTTTAGCCTCACTAGACTTCTCTCTAGTTTGAACTCCATTTGTGTTCTTGACAGGCCACATGGGCAACATTCGTTAATCTTGGTGGAGGATATTGGAAAGTACATAGATTCCTCTGAAAACATTGCTCGACAGATTTACATTACATTTCCAGCTGCTAGTACTTTCACAGAACAGGATGTTTCAAGCTACTTCGACAAATATGGACCTGTTCAAGATGTCAAGATACCATACCAACAGAGCAGGATGTATGGATTTGTAACATTCGTTTATGCTGAGACAGCCAGACATGTTCTCTCAATCAGAACTACTCATTTTGTCTGTGGTGCTCAAGTTCTTGTCAAGCCTTACAAGGAGAAGTCTAGGCTTATACAGAGAAATAATGCTGAAAATAACAGAGAAGGAAACATGGAAGAAGCAAATTCTATGCCAAGAGCCACAAATGATTCACTGACAAGGATTCTGATTGATGAAAATGAGCTACAGCGACAACGCTCTGAGCTTTTTTTGTCGTTCGTGGATTCAACAAACGAATGGACACATTCATCAGGCAATGCTGAGGGGCCAGAACTGGAGGACCTGTTATCCACTGATCAGCAGCAGCATGAACAGCTACCTTCATTGACTGACCAAGCTGATGATGATAGCACAACACAAGAGGTTGATCTACCGGAGAGCCTGTTTGCAGCTCCGACGAGGAGGTGAATTCGAACAGAGTTTATAGATGAAGATGTTGATAGAATAAGAAGAAGATACAAGACTACTACATTTTTCCCCCCCACAATCGGTTTAGTTTACGACAGATTTTATGTGTTTGTTTCTGGTTTCTAATAGGTGGAAGAAAAGTGGATTATTCTGAAAAGAGGAGTAGAGATGGATTTGTTTTGTTTTCCTAAGAAAAGTTTGCCATTTCCTAGAATAGTGTGTTTTGATCTGATCTACTACTTTTTTCTATTTAGTTCAAGGAAATGGTGTAAATGAAAGACATAATGTCTACTCAAATAAATGCTTTTACTTTCTATCCTCGATGGTATATATCATCTACTATTAGCAAATATCGAAGTAAGGTTAGATTCTCTCCATAATAGAAGGTGAGCGTGTCGAGCCGAGTGCTTCGGGTGACTTCTTTTGAAGGGATGTAAGTGTGAGACTGATGATAATACAGAAGGACCACCATCTTCAATCCCC

Coding sequence (CDS)

ATGGAATTACCAGAGCCAACAAATTTATTGTTTCAAAGAATCTGCGAATTGGATGCGGAATGTGCGACCACGATCATCGAGTACATTATTCTAAACACCGACGATCGCGACATGATCCGATTGGCCTTCTGTCCTGATACTGTTCTTCAATCTTTCATCGAAGACGCCAAATCAGACCTAGGAATCACTGAAATGGTGTCCTCTGCGCTATCCCCTGTTTCGATTTCCGACCCCTATTTGCCCTTATCCGTGTACCGCCGGGATCCTTCCTCTCGCTTATTCCCCTCCGAGTCCTACTCCGATTTGGACATTCAAAACCCTATGCAGTTTCTTTCCCTGGAGGACCAATTCGAATCGGTGAATACGGTTGGGCTGCGGAGGTTTCCGTTGAAGATTTGTCACTATTTCAGCAAAGGATATTGTAAGCACGGGAGTAAATGCAGGTATTTTCACGGGCAAGTTAAGGCAGCGCATGCGAATCACGAGCAGCGAGTTATCCTTCGTGGTAAGGCGCTTGAAAACCTGGAAATGGAAATCGTTGGGCTTCTGAAATCCCGACGAGGGAGTCCGATTTCTATTGCGTCTTTGCCGATTGTTTATTATGAATTCTACGGCAAGAATCTTCAAGCCGACGGGTATCTTACTGAAGGCCGTGGATTTGGGAGGGCTTGTTTTAGCCTCACTAGACTTCTCTCTAGTTTGAACTCCATTTGTGTTCTTGACAGGCCACATGGGCAACATTCGTTAATCTTGGTGGAGGATATTGGAAAGTACATAGATTCCTCTGAAAACATTGCTCGACAGATTTACATTACATTTCCAGCTGCTAGTACTTTCACAGAACAGGATGTTTCAAGCTACTTCGACAAATATGGACCTGTTCAAGATGTCAAGATACCATACCAACAGAGCAGGATGTATGGATTTGTAACATTCGTTTATGCTGAGACAGCCAGACATGTTCTCTCAATCAGAACTACTCATTTTGTCTGTGGTGCTCAAGTTCTTGTCAAGCCTTACAAGGAGAAGTCTAGGCTTATACAGAGAAATAATGCTGAAAATAACAGAGAAGGAAACATGGAAGAAGCAAATTCTATGCCAAGAGCCACAAATGATTCACTGACAAGGATTCTGATTGATGAAAATGAGCTACAGCGACAACGCTCTGAGCTTTTTTTGTCGTTCGTGGATTCAACAAACGAATGGACACATTCATCAGGCAATGCTGAGGGGCCAGAACTGGAGGACCTGTTATCCACTGATCAGCAGCAGCATGAACAGCTACCTTCATTGACTGACCAAGCTGATGATGATAGCACAACACAAGAGGTTGATCTACCGGAGAGCCTGTTTGCAGCTCCGACGAGGAGGTGA

Protein sequence

MELPEPTNLLFQRICELDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDLGITEMVSSALSPVSISDPYLPLSVYRRDPSSRLFPSESYSDLDIQNPMQFLSLEDQFESVNTVGLRRFPLKICHYFSKGYCKHGSKCRYFHGQVKAAHANHEQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNREGNMEEANSMPRATNDSLTRILIDENELQRQRSELFLSFVDSTNEWTHSSGNAEGPELEDLLSTDQQQHEQLPSLTDQADDDSTTQEVDLPESLFAAPTRR
Homology
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BLAST of CmaCh20G006780 vs. Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 7.5e-77
Identity = 203/526 (38.59%), Postives = 280/526 (53.23%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTDD--RDMIRLAFCPDTVLQSFIEDAKS 60
           M   E  N++  RI +L+ E A  I  Y++L  ++  RDMIRLAFCPD+V+ S I   K 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 61  DLGITEMVSSALSPVSISDPYL-------PLSVYRRDPSSRLFPSESYSDLDIQNPMQFL 120
           +L        +     I  P         PLSV    P    F   S     +QN +QFL
Sbjct: 61  ELARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNLQFL 120

Query: 121 SLEDQFESVN--------------------TVGLRRFPLKICHYFSKGYCKHGSKCRYFH 180
           + ED   S                      +  L  FP+KICHYF+KG+CKHG+ CRYFH
Sbjct: 121 NFEDPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFH 180

Query: 181 GQVKAAHANHEQRV-----------ILRGKALENLEMEIVGLLKSRRGSPISIASLPIVY 240
           GQ+     +  Q             ++   +LE LE EI+ LLK RRG+PISIASLP++Y
Sbjct: 181 GQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMY 240

Query: 241 YEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVLDRPHGQHSLILVEDIGKYI 300
           YE YG+ LQA+GYLTE +  G+A +SLT+LL+ L N+I ++DRPHGQHS+IL ED  K++
Sbjct: 241 YEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFV 300

Query: 301 DSSENI---------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFV 360
           + +            +RQIY+TFPA S+FTE DVS YF  YG V+DV+IP QQ RMYGFV
Sbjct: 301 EYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFV 360

Query: 361 TFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSR----LIQRNNAENNREGNM-----E 420
           TF  +ET +H+L+    HF+C A+VLVKPY+EKSR    L         R G+       
Sbjct: 361 TFASSETVKHILAKGNPHFICNARVLVKPYREKSRSSRYLDNYKPLHGMRYGSKFIERDI 420

Query: 421 EANSMPRATNDS--LTRILIDENELQRQRS----ELFLSFVDSTNEWTHSSGNAEGPE-L 454
           E N++P   ++S  + +  + E E    +S      +L F     + T ++   E  E L
Sbjct: 421 EMNTLPPRVSESSRMRKPFLSEPEQSVSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERL 480

[Close]
BLAST of CmaCh20G006780 vs. Swiss-Prot
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 243.0 bits (619), Expect = 6.2e-63
Identity = 130/245 (53.06%), Postives = 162/245 (66.12%), Query Frame = 1 

Query: 133 CHYFSKGYCKHGSKCRYFHGQVK----AAHA------NHEQRVILRGKALENLEMEIVGL 192
           CHYFSKG CK+G  C Y H QV     A  A      NH+   +  G +LE LEMEI  L
Sbjct: 266 CHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPG-SLETLEMEITEL 325

Query: 193 LKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDR 252
           L SRRG P+SIASLP +Y E YGK LQADGYLTE +  G+A +SLTRLLS LN I V++R
Sbjct: 326 LNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIER 385

Query: 253 PHGQHSLILVEDIGKYID-------------SSENIARQIYITFPAASTFTEQDVSSYFD 312
           PHGQHS++L ED  KY+D             S    + QIY+TFPA STF E DV++YF 
Sbjct: 386 PHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFG 445

Query: 313 KYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQR 355
           +YGPV+DV+IP Q+ RM+GFV+F   ET   +L  R  HF+CG++VLVKPY+EKS+ + R
Sbjct: 446 QYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDR 505

[Close]
BLAST of CmaCh20G006780 vs. Swiss-Prot
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica GN=Os07g0583300 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-47
Identity = 108/229 (47.16%), Postives = 145/229 (63.32%), Query Frame = 1 

Query: 131 KICHY-FSKGYCKHGSKCRYFHGQVKAAHANHEQRVILRGKALENLEMEIVGLLKSRRGS 190
           K CH+ F +GYCK G  C++FHG V   H     R +    +L  L+MEI  LL      
Sbjct: 180 KPCHFHFFRGYCKKGVNCQFFHGSVPELH---NPRQVHPFASLSKLDMEIRELLIGIP-P 239

Query: 191 PISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSL 250
           P+++  LP +Y+E YGK L+ DG+LTE +  GR   SLT LL  LN+I V++R HGQ+ +
Sbjct: 240 PVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHV 299

Query: 251 ILVEDIGK-YIDS-----SENI------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDV 310
           +LVED  K Y+D      S N+      + QIY+TFP  S FT+ DV +YF ++GPV  V
Sbjct: 300 VLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGV 359

Query: 311 KIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRL 347
           +IPYQ+ RM+GFV+F+Y ET R +LS  T HF+CG +VLVK Y EKS L
Sbjct: 360 RIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404

[Close]
BLAST of CmaCh20G006780 vs. Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.4e-32
Identity = 150/514 (29.18%), Postives = 224/514 (43.58%), Query Frame = 1 

Query: 5   EPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSDLGIT 64
           E T ++  RI  LD E A+ I+  ++L    +++MIRLAF P+T++ S I  AK +LG  
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELG-- 64

Query: 65  EMVSSALSPVSISDPYLPLSVYR----RDPSSRLFPSESYSDLDIQNPMQFLS-----LE 124
            +++ + SP S  D  +     R       S   + +   S  D+ N  + +        
Sbjct: 65  -LMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRST 124

Query: 125 DQFESVNT-----------------VGLRRFPLKICHYFSKGYCKHGSKCRYFHGQVKAA 184
           D   SV+                  +G    P   C YF++G+CK+G+ CR+ H    A 
Sbjct: 125 DFLGSVHARSGSCVLDGLGYGGDSDLGFGGVP---CSYFARGFCKNGASCRFVHSDGGAD 184

Query: 185 HANHEQRVILRGKALENLEMEIVGLLKSRRGSP------ISIASLPIVYYEFYGKNLQAD 244
                 R               + LL+S    P      ++ +SLP   +   G NLQ +
Sbjct: 185 LVGSPSR---------------IELLRSNSVPPRLAHHFMTRSSLP--SFSTKGVNLQQN 244

Query: 245 GYLTEGRG--FGRACFSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKYIDSSENIARQI 304
                      G     L R       +  +  P                      +RQI
Sbjct: 245 DVQRAAAALMIGDELQKLGRWRPERIDLSAMACP---------------------ASRQI 304

Query: 305 YITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHF 364
           Y+TFPA S F E+DVS+YF  +GPVQDV+IPYQQ RM+GFVTFVY ET + +L+    HF
Sbjct: 305 YLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHF 364

Query: 365 VCGAQVLVKPYKEKSRLIQ--RNNAENNREGNMEEANSMPR----------ATNDSLTRI 424
           VC ++VLVKPYKEK ++    R N    RE +    +S PR           T D L R 
Sbjct: 365 VCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNTQDVLWRS 424

Query: 425 LIDENELQRQRSELF-LSFVDSTNEWTHSSG---NAEGPELEDL-----LSTDQQQHE-- 455
             +E  L+ Q   L  L  +D    +  +S    ++  P  + L     LS  +++++  
Sbjct: 425 KFEEEILELQSRRLMNLQLLDVKKHFQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGG 474

[Close]
BLAST of CmaCh20G006780 vs. Swiss-Prot
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 5.1e-25
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 266 ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIR 325
           +RQIY+TFPA STF E+DVS+YF  YGPV DV+IPYQQ RM+GFVTFVY ET + +L+  
Sbjct: 365 SRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKG 424

Query: 326 TTHFVCGAQVLVKPYKEKSRL 347
             HF+C A+VLVKPYKEK ++
Sbjct: 425 NPHFICDARVLVKPYKEKGKV 445

[Close]
BLAST of CmaCh20G006780 vs. TrEMBL
Match: A0A067ETH9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.1e-94
Identity = 238/568 (41.90%), Postives = 326/568 (57.39%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN---- 455
           KPY+EKSRL+ R   E  +              E ++MPRA N+S  L + L++E+    
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAI 480

[Close]
BLAST of CmaCh20G006780 vs. TrEMBL
Match: A0A067EWZ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 8.0e-94
Identity = 239/571 (41.86%), Postives = 327/571 (57.27%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN---- 455
           KPY+EKSRL+ R   E  +              E ++MPRA N+S  L + L++E+    
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAI 480

[Close]
BLAST of CmaCh20G006780 vs. TrEMBL
Match: M5XBS6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003564mg PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.4e-93
Identity = 238/557 (42.73%), Postives = 321/557 (57.63%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T +++ RI +++ E  + II Y++L    +RDMIRLAF PD ++QS I  AK++
Sbjct: 1   MDFSESTKVVYNRIQKIEPENVSKIIGYLLLQDHGERDMIRLAFSPDNLIQSLINKAKTE 60

Query: 61  LGITEM-VSSALSP-----VSISDPYLPLSVYR-------------------RDPS---- 120
           LG+ ++ VS+ +SP     V +SDP L  + Y                    RDP     
Sbjct: 61  LGLCKLAVSAPISPSQVNQVPVSDPPLQFTPYTPNLTRPISSPTPLGAVNPFRDPQLPGD 120

Query: 121 -----SRLFPSESYSDLDI-----QNPMQFLS-------LEDQFESVNTV----GLRRFP 180
                +  F    YSD  I     QN MQFL          +   SV T      L  FP
Sbjct: 121 QQPLQNVEFVPPGYSDSAIEDYRLQNQMQFLPDFSSNYCYHEPALSVRTSRRSPSLPEFP 180

Query: 181 LKICHYFSKGYCKHGSKCRYFHGQVKAAHANH--------EQRVILRGKALENLEMEIVG 240
           LK+CHYF+KG+CKHGS CRYFHG   A   +H        +  V+  G +LE LE+EI+ 
Sbjct: 181 LKVCHYFNKGFCKHGSNCRYFHGHPMAESFSHPNLNELSNDDHVVSPG-SLEKLEIEIIE 240

Query: 241 LLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVL 300
           LLKSRRG PISIASLP++YYE YG+ LQA+GYLTE +  G+A +SLT+LL+ L NSI +L
Sbjct: 241 LLKSRRGFPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLL 300

Query: 301 DRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAASTFTEQDVSSYFDKY 360
           DRPHGQHS+IL EDI KY++ +            +RQIY+TFPA S FTEQDVS+YF+KY
Sbjct: 301 DRPHGQHSVILAEDIPKYLEYAGEKTEPGGIIAGSRQIYLTFPAESNFTEQDVSNYFNKY 360

Query: 361 GPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNN 420
           GPVQDV+IP QQ RM+GFVTFVYAET RH+LS    HFVCGA+VLVKPY+EKSRL+ R  
Sbjct: 361 GPVQDVRIPCQQKRMFGFVTFVYAETVRHILSKGNPHFVCGARVLVKPYREKSRLVDRKF 420

Query: 421 AENNREGNM---------EEANSMPRATNDS--LTRILIDEN----ELQRQR-SELFLS- 455
           +E  +              E +SMPR   ++  L +  ++EN    EL+R+R SE+ L+ 
Sbjct: 421 SEKMQHAMCYNSHFIDADSEFHSMPRVCENARFLRKQFMEENEQALELERRRLSEMHLAA 480

[Close]
BLAST of CmaCh20G006780 vs. TrEMBL
Match: A0A067ETA5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.0e-92
Identity = 239/571 (41.86%), Postives = 326/571 (57.09%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN---- 455
           KPY+EKSRL+ R   E  +              E ++MPRA N+S  L + L++E+    
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAI 480

[Close]
BLAST of CmaCh20G006780 vs. TrEMBL
Match: A0A067F5D1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 3.4e-92
Identity = 239/574 (41.64%), Postives = 327/574 (56.97%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDR---PHGQHSLILVEDIGKYIDSSENI---------ARQIYITFP 360
           T+LL+ L NSI ++DR   PHGQHS+IL ED+ KY++ S            +RQIY+TFP
Sbjct: 301 TKLLARLKNSIRLIDRCNLPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFP 360

Query: 361 AASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQ 420
           A STFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+
Sbjct: 361 AESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 420

Query: 421 VLVKPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN- 455
           VLVKPY+EKSRL+ R   E  +              E ++MPRA N+S  L + L++E+ 
Sbjct: 421 VLVKPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHE 480

[Close]
BLAST of CmaCh20G006780 vs. TAIR10
Match: AT2G05160.1 (AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 289.3 bits (739), Expect = 4.2e-78
Identity = 203/526 (38.59%), Postives = 280/526 (53.23%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTDD--RDMIRLAFCPDTVLQSFIEDAKS 60
           M   E  N++  RI +L+ E A  I  Y++L  ++  RDMIRLAFCPD+V+ S I   K 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 61  DLGITEMVSSALSPVSISDPYL-------PLSVYRRDPSSRLFPSESYSDLDIQNPMQFL 120
           +L        +     I  P         PLSV    P    F   S     +QN +QFL
Sbjct: 61  ELARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNLQFL 120

Query: 121 SLEDQFESVN--------------------TVGLRRFPLKICHYFSKGYCKHGSKCRYFH 180
           + ED   S                      +  L  FP+KICHYF+KG+CKHG+ CRYFH
Sbjct: 121 NFEDPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFH 180

Query: 181 GQVKAAHANHEQRV-----------ILRGKALENLEMEIVGLLKSRRGSPISIASLPIVY 240
           GQ+     +  Q             ++   +LE LE EI+ LLK RRG+PISIASLP++Y
Sbjct: 181 GQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMY 240

Query: 241 YEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVLDRPHGQHSLILVEDIGKYI 300
           YE YG+ LQA+GYLTE +  G+A +SLT+LL+ L N+I ++DRPHGQHS+IL ED  K++
Sbjct: 241 YEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFV 300

Query: 301 DSSENI---------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFV 360
           + +            +RQIY+TFPA S+FTE DVS YF  YG V+DV+IP QQ RMYGFV
Sbjct: 301 EYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFV 360

Query: 361 TFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSR----LIQRNNAENNREGNM-----E 420
           TF  +ET +H+L+    HF+C A+VLVKPY+EKSR    L         R G+       
Sbjct: 361 TFASSETVKHILAKGNPHFICNARVLVKPYREKSRSSRYLDNYKPLHGMRYGSKFIERDI 420

Query: 421 EANSMPRATNDS--LTRILIDENELQRQRS----ELFLSFVDSTNEWTHSSGNAEGPE-L 454
           E N++P   ++S  + +  + E E    +S      +L F     + T ++   E  E L
Sbjct: 421 EMNTLPPRVSESSRMRKPFLSEPEQSVSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERL 480

[Close]
BLAST of CmaCh20G006780 vs. TAIR10
Match: AT3G52980.1 (AT3G52980.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 262.7 bits (670), Expect = 4.2e-70
Identity = 162/370 (43.78%), Postives = 221/370 (59.73%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD--DRDMIRLAFCPDTVLQSFIEDAKS 60
           M   E  N++  RI +L+ E A+ II Y++L  D  DRDMIRLAFCPD+V++S I   K 
Sbjct: 1   MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60

Query: 61  DLGITEMVSSALSP--------VSISDPYLPLSVYRRDPSSRLFPSESY----SDLDI-- 120
           +L      ++  S          S+S       +    P S L    S+    +D+D   
Sbjct: 61  ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSL 120

Query: 121 -QNPMQFLSLEDQFESV--------------------NTVGLRRFPLKICHYFSKGYCKH 180
             N   FL  ED   S                      ++ L  FPLKICHYF+KG+CKH
Sbjct: 121 KDNVQYFLDFEDSVTSPEFSTSFFSQKKQSLSLRTSRRSLSLPEFPLKICHYFNKGFCKH 180

Query: 181 GSKCRYFHGQVKAAHANHEQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEF 240
           G+ C          + + E+ V+  G +LE LE EI+ LLKSRRG+PISIA LP++Y+E 
Sbjct: 181 GNNCH--------NNLSDEEHVVSPG-SLEKLEREIIELLKSRRGAPISIAFLPMMYHEK 240

Query: 241 YGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVLDRPHGQHSLILVEDIGKYI--- 300
           YG++LQA+GYLTE +  G+A FSLT+LL+ L N+I ++DRPHGQHS+IL ED+ K++   
Sbjct: 241 YGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVILAEDVSKFVEYT 300

Query: 301 -DSSENIA-----RQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFV 324
            + SE+ A     RQ+Y+TFPA S+FTE DVS+YF + GPV+DV+IP QQ RMYGFVTFV
Sbjct: 301 GERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVEDVRIPCQQKRMYGFVTFV 360

[Close]
BLAST of CmaCh20G006780 vs. TAIR10
Match: AT3G51950.1 (AT3G51950.1 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-33
Identity = 150/514 (29.18%), Postives = 224/514 (43.58%), Query Frame = 1 

Query: 5   EPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSDLGIT 64
           E T ++  RI  LD E A+ I+  ++L    +++MIRLAF P+T++ S I  AK +LG  
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELG-- 64

Query: 65  EMVSSALSPVSISDPYLPLSVYR----RDPSSRLFPSESYSDLDIQNPMQFLS-----LE 124
            +++ + SP S  D  +     R       S   + +   S  D+ N  + +        
Sbjct: 65  -LMNCSRSPWSHQDELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMNSRST 124

Query: 125 DQFESVNT-----------------VGLRRFPLKICHYFSKGYCKHGSKCRYFHGQVKAA 184
           D   SV+                  +G    P   C YF++G+CK+G+ CR+ H    A 
Sbjct: 125 DFLGSVHARSGSCVLDGLGYGGDSDLGFGGVP---CSYFARGFCKNGASCRFVHSDGGAD 184

Query: 185 HANHEQRVILRGKALENLEMEIVGLLKSRRGSP------ISIASLPIVYYEFYGKNLQAD 244
                 R               + LL+S    P      ++ +SLP   +   G NLQ +
Sbjct: 185 LVGSPSR---------------IELLRSNSVPPRLAHHFMTRSSLP--SFSTKGVNLQQN 244

Query: 245 GYLTEGRG--FGRACFSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKYIDSSENIARQI 304
                      G     L R       +  +  P                      +RQI
Sbjct: 245 DVQRAAAALMIGDELQKLGRWRPERIDLSAMACP---------------------ASRQI 304

Query: 305 YITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHF 364
           Y+TFPA S F E+DVS+YF  +GPVQDV+IPYQQ RM+GFVTFVY ET + +L+    HF
Sbjct: 305 YLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHF 364

Query: 365 VCGAQVLVKPYKEKSRLIQ--RNNAENNREGNMEEANSMPR----------ATNDSLTRI 424
           VC ++VLVKPYKEK ++    R N    RE +    +S PR           T D L R 
Sbjct: 365 VCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNTQDVLWRS 424

Query: 425 LIDENELQRQRSELF-LSFVDSTNEWTHSSG---NAEGPELEDL-----LSTDQQQHE-- 455
             +E  L+ Q   L  L  +D    +  +S    ++  P  + L     LS  +++++  
Sbjct: 425 KFEEEILELQSRRLMNLQLLDVKKHFQLNSPTNIHSPNPFSQSLISPRPLSVIKREYDGG 474

[Close]
BLAST of CmaCh20G006780 vs. TAIR10
Match: AT3G21100.2 (AT3G21100.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-27
Identity = 61/131 (46.56%), Postives = 91/131 (69.47%), Query Frame = 1 

Query: 260 DSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETAR 319
           D S + ++QIY+TFPA S+FT++DVS+YF  +GPVQDV+IPYQQ RM+GFVTF+++ET R
Sbjct: 311 DKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVR 370

Query: 320 HVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNREGNMEEANSMPRATNDSL-TRIL 379
            +L+    HF+C ++VLVKPYKEK R++++   +   +  ME  N  P ++   + +R L
Sbjct: 371 IILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQ-QMERGNFSPGSSPSGMDSRDL 430

Query: 380 IDENELQRQRS 390
            D +   R  S
Sbjct: 431 FDSHLAPRMFS 440

[Close]
BLAST of CmaCh20G006780 vs. TAIR10
Match: AT3G63450.3 (AT3G63450.3 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-25
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1 

Query: 266 ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIR 325
           +RQIY+TFPA S F E+DVS YF  +GPVQDV+IPYQQ RM+GFVTF+Y ET + +L+  
Sbjct: 154 SRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETVKSILAKG 213

Query: 326 TTHFVCGAQVLVKPYKEKSRLIQRNNAENNRE 358
             HFVC ++VLVKPYKEK ++  +   + +R+
Sbjct: 214 NPHFVCHSRVLVKPYKEKGKVPDKYRTKPSRD 245

[Close]
BLAST of CmaCh20G006780 vs. NCBI nr
Match: gi|641839479|gb|KDO58408.1| (hypothetical protein CISIN_1g007997mg [Citrus sinensis])

HSP 1 Score: 354.4 bits (908), Expect = 3.0e-94
Identity = 238/568 (41.90%), Postives = 326/568 (57.39%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN---- 455
           KPY+EKSRL+ R   E  +              E ++MPRA N+S  L + L++E+    
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAI 480

[Close]
BLAST of CmaCh20G006780 vs. NCBI nr
Match: gi|641839481|gb|KDO58410.1| (hypothetical protein CISIN_1g007997mg [Citrus sinensis])

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 239/571 (41.86%), Postives = 327/571 (57.27%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN---- 455
           KPY+EKSRL+ R   E  +              E ++MPRA N+S  L + L++E+    
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGDTELHTMPRACNNSRLLRKQLMEEHEQAI 480

[Close]
BLAST of CmaCh20G006780 vs. NCBI nr
Match: gi|595931353|ref|XP_007215321.1| (hypothetical protein PRUPE_ppa003564mg [Prunus persica])

HSP 1 Score: 351.7 bits (901), Expect = 2.0e-93
Identity = 238/557 (42.73%), Postives = 321/557 (57.63%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T +++ RI +++ E  + II Y++L    +RDMIRLAF PD ++QS I  AK++
Sbjct: 1   MDFSESTKVVYNRIQKIEPENVSKIIGYLLLQDHGERDMIRLAFSPDNLIQSLINKAKTE 60

Query: 61  LGITEM-VSSALSP-----VSISDPYLPLSVYR-------------------RDPS---- 120
           LG+ ++ VS+ +SP     V +SDP L  + Y                    RDP     
Sbjct: 61  LGLCKLAVSAPISPSQVNQVPVSDPPLQFTPYTPNLTRPISSPTPLGAVNPFRDPQLPGD 120

Query: 121 -----SRLFPSESYSDLDI-----QNPMQFLS-------LEDQFESVNTV----GLRRFP 180
                +  F    YSD  I     QN MQFL          +   SV T      L  FP
Sbjct: 121 QQPLQNVEFVPPGYSDSAIEDYRLQNQMQFLPDFSSNYCYHEPALSVRTSRRSPSLPEFP 180

Query: 181 LKICHYFSKGYCKHGSKCRYFHGQVKAAHANH--------EQRVILRGKALENLEMEIVG 240
           LK+CHYF+KG+CKHGS CRYFHG   A   +H        +  V+  G +LE LE+EI+ 
Sbjct: 181 LKVCHYFNKGFCKHGSNCRYFHGHPMAESFSHPNLNELSNDDHVVSPG-SLEKLEIEIIE 240

Query: 241 LLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVL 300
           LLKSRRG PISIASLP++YYE YG+ LQA+GYLTE +  G+A +SLT+LL+ L NSI +L
Sbjct: 241 LLKSRRGFPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLL 300

Query: 301 DRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAASTFTEQDVSSYFDKY 360
           DRPHGQHS+IL EDI KY++ +            +RQIY+TFPA S FTEQDVS+YF+KY
Sbjct: 301 DRPHGQHSVILAEDIPKYLEYAGEKTEPGGIIAGSRQIYLTFPAESNFTEQDVSNYFNKY 360

Query: 361 GPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNN 420
           GPVQDV+IP QQ RM+GFVTFVYAET RH+LS    HFVCGA+VLVKPY+EKSRL+ R  
Sbjct: 361 GPVQDVRIPCQQKRMFGFVTFVYAETVRHILSKGNPHFVCGARVLVKPYREKSRLVDRKF 420

Query: 421 AENNREGNM---------EEANSMPRATNDS--LTRILIDEN----ELQRQR-SELFLS- 455
           +E  +              E +SMPR   ++  L +  ++EN    EL+R+R SE+ L+ 
Sbjct: 421 SEKMQHAMCYNSHFIDADSEFHSMPRVCENARFLRKQFMEENEQALELERRRLSEMHLAA 480

[Close]
BLAST of CmaCh20G006780 vs. NCBI nr
Match: gi|568830431|ref|XP_006469503.1| (PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X3 [Citrus sinensis])

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 237/571 (41.51%), Postives = 325/571 (56.92%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +L+ E  + II Y++L    +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYLPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYSDLD-----IQNPMQFLSLEDQFESVNTVG------------------- 180
            +S  F    YSD       +QN MQFL+LEDQF+SVN+V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 ------LRRFPLKICHYFSKGYCKHGSKCRYFHG--------QVKAAHAN---HEQRVIL 240
                 L  FP+K+CHYF+KG+CKHG+ CRYFHG        Q+ + +AN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLP++YYE YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+  Y++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPNYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAENNRE---------GNMEEANSMPRATNDS--LTRILIDEN---- 455
           KPY+EKSRL+ R   E  +              E ++MPR  N+S  L + L++E+    
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPLFCSLHFTDGDTELHTMPRVCNNSRLLRKQLMEEHEQAI 480

[Close]
BLAST of CmaCh20G006780 vs. NCBI nr
Match: gi|645247581|ref|XP_008229903.1| (PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X3 [Prunus mume])

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 237/557 (42.55%), Postives = 321/557 (57.63%), Query Frame = 1 

Query: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T +++ RI +++ E  + II Y++L    +RDMIRLAF PD ++QS I  AK++
Sbjct: 1   MDFSESTKVVYNRIQKIEPENVSKIIGYLLLQDHGERDMIRLAFSPDNLIQSLINKAKTE 60

Query: 61  LGITEM-VSSALSP-----VSISDPYLPLSVYR-------------------RDPS---- 120
           LG+ ++ VS+ +SP     V +SDP L  + Y                    RDP     
Sbjct: 61  LGLCKLAVSAPISPSHVNQVPVSDPPLQFTPYTSNVTRPISSPTPLGAVNPFRDPQLPGD 120

Query: 121 -----SRLFPSESYSDLDI-----QNPMQFLS-------LEDQFESVNTV----GLRRFP 180
                +  F    YSD  I     QN MQFL          +   SV T      L  FP
Sbjct: 121 QQPLQNVEFVPPGYSDSAIEDYRLQNQMQFLPDFSSNYCYHEPALSVRTSRRSPSLPEFP 180

Query: 181 LKICHYFSKGYCKHGSKCRYFHGQVKAAHANH--------EQRVILRGKALENLEMEIVG 240
           LK+CHYF+KG+CKHGS CRYFHG   A   +H        +  V+  G +LE LE+EI+ 
Sbjct: 181 LKVCHYFNKGFCKHGSNCRYFHGHPMAESFSHPNLNELSNDDHVVSPG-SLEKLEIEIIE 240

Query: 241 LLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVL 300
           LLKSRRG PISIASLP++YYE YG+ LQA+GYLTE +  G+A +SLT+LL+ L NSI +L
Sbjct: 241 LLKSRRGFPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNSIRLL 300

Query: 301 DRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAASTFTEQDVSSYFDKY 360
           DRPHGQHS+IL EDI K+++ +            +RQIY+TFPA S FTEQDVS+YF+KY
Sbjct: 301 DRPHGQHSVILAEDIPKFLEYAGEKTEPGGIIAGSRQIYLTFPAESNFTEQDVSNYFNKY 360

Query: 361 GPVQDVKIPYQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNN 420
           GPVQDV+IP QQ RM+GFVTFVYAET RH+LS    HFVCGA+VLVKPY+EKSRL+ R  
Sbjct: 361 GPVQDVRIPCQQKRMFGFVTFVYAETVRHILSKGNPHFVCGARVLVKPYREKSRLVDRKF 420

Query: 421 AENNREGNM---------EEANSMPRATNDS--LTRILIDEN----ELQRQR-SELFLS- 455
           +E  +              E  SMPR   ++  L +  ++EN    EL+R+R SE+ L+ 
Sbjct: 421 SEKMQHSMCYNSHFIDADSEFYSMPRVCENARFLRKQFMEENEQALELERRRLSEMHLAA 480

The following BLAST results are available for this feature:
BLAST of CmaCh20G006780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H18_ARATH7.5e-7738.59Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g051... [more]
C3H54_ORYSJ6.2e-6353.06Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN... [more]
C3H51_ORYSJ1.6e-4747.16Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja... [more]
C3H46_ARATH7.4e-3229.18Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g519... [more]
C3H22_ORYSJ5.1e-2565.43Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN... [more]
BLAST of CmaCh20G006780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067ETH9_CITSI2.1e-9441.90Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1[more]
A0A067EWZ3_CITSI8.0e-9441.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1[more]
M5XBS6_PRUPE1.4e-9342.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003564mg PE=4 SV=1[more]
A0A067ETA5_CITSI2.0e-9241.86Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1[more]
A0A067F5D1_CITSI3.4e-9241.64Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007997mg PE=4 SV=1[more]
BLAST of CmaCh20G006780 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G05160.14.2e-7838.59 CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT3G52980.14.2e-7043.78 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)... [more]
AT3G51950.14.1e-3329.18 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)... [more]
AT3G21100.22.6e-2746.56 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G63450.34.2e-2556.52 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmaCh20G006780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|641839479|gb|KDO58408.1|3.0e-9441.90hypothetical protein CISIN_1g007997mg [Citrus sinensis][more]
gi|641839481|gb|KDO58410.1|1.2e-9341.86hypothetical protein CISIN_1g007997mg [Citrus sinensis][more]
gi|595931353|ref|XP_007215321.1|2.0e-9342.73hypothetical protein PRUPE_ppa003564mg [Prunus persica][more]
gi|568830431|ref|XP_006469503.1|1.3e-9241.51PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X3 [Citrus sine... [more]
gi|645247581|ref|XP_008229903.1|1.3e-9242.55PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X3 [Prunus mume... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR000571Znf_CCCH
IPR012677Nucleotide-bd_a/b_plait_sf
IPR025605OST-HTH/LOTUS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G006780.1CmaCh20G006780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 278..322
score: 1.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 268..338
score: 3.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 267..354
score: 11
IPR000571Zinc finger, CCCH-typeGENE3DG3DSA:4.10.1000.10coord: 131..153
score: 5.
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 132..153
score: 1.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 127..154
score:
IPR000571Zinc finger, CCCH-typeunknownSSF90229CCCH zinc fingercoord: 130..152
score: 2.2
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 278..343
score: 3.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 278..356
score: 3.12
IPR025605OST-HTH/LOTUS domainPFAMPF12872OST-HTHcoord: 172..248
score: 3.
IPR025605OST-HTH/LOTUS domainPROFILEPS51644HTH_OSTcoord: 171..254
score: 1
NoneNo IPR availablePANTHERPTHR24009FAMILY NOT NAMEDcoord: 2..363
score: 2.1E
NoneNo IPR availablePANTHERPTHR24009:SF4ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18coord: 2..363
score: 2.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G006780Cucsa.042290Cucumber (Gy14) v1cgycmaB0030
CmaCh20G006780Cla004489Watermelon (97103) v1cmawmB512
CmaCh20G006780CmoCh20G006770Cucurbita moschata (Rifu)cmacmoB551
CmaCh20G006780CmoCh02G002310Cucurbita moschata (Rifu)cmacmoB556
CmaCh20G006780Lsi10G000520Bottle gourd (USVL1VR-Ls)cmalsiB509
CmaCh20G006780Cp4.1LG16g03870Cucurbita pepo (Zucchini)cmacpeB565
CmaCh20G006780CsaV3_3G004380Cucumber (Chinese Long) v3cmacucB0659
CmaCh20G006780Cla97C10G189000Watermelon (97103) v2cmawmbB566
CmaCh20G006780Bhi11G000389Wax gourdcmawgoB0676
CmaCh20G006780CsGy3G004420Cucumber (Gy14) v2cgybcmaB389
CmaCh20G006780Carg05151Silver-seed gourdcarcmaB1121
CmaCh20G006780Carg16100Silver-seed gourdcarcmaB0486
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G006780CmaCh02G002260Cucurbita maxima (Rimu)cmacmaB471
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G006780Cucurbita moschata (Rifu)cmacmoB549
CmaCh20G006780Wild cucumber (PI 183967)cmacpiB561
CmaCh20G006780Wild cucumber (PI 183967)cmacpiB582
CmaCh20G006780Cucumber (Chinese Long) v2cmacuB555
CmaCh20G006780Cucumber (Chinese Long) v2cmacuB576
CmaCh20G006780Melon (DHL92) v3.5.1cmameB494
CmaCh20G006780Watermelon (Charleston Gray)cmawcgB483
CmaCh20G006780Watermelon (Charleston Gray)cmawcgB493
CmaCh20G006780Watermelon (97103) v1cmawmB527
CmaCh20G006780Watermelon (97103) v1cmawmB537
CmaCh20G006780Cucurbita pepo (Zucchini)cmacpeB560
CmaCh20G006780Cucurbita pepo (Zucchini)cmacpeB575
CmaCh20G006780Cucurbita pepo (Zucchini)cmacpeB588
CmaCh20G006780Bottle gourd (USVL1VR-Ls)cmalsiB515
CmaCh20G006780Bottle gourd (USVL1VR-Ls)cmalsiB517
CmaCh20G006780Cucumber (Gy14) v2cgybcmaB791
CmaCh20G006780Cucumber (Gy14) v2cgybcmaB957
CmaCh20G006780Melon (DHL92) v3.6.1cmamedB574
CmaCh20G006780Silver-seed gourdcarcmaB0280
CmaCh20G006780Silver-seed gourdcarcmaB1475
CmaCh20G006780Cucumber (Chinese Long) v3cmacucB0667
CmaCh20G006780Cucumber (Chinese Long) v3cmacucB0687
CmaCh20G006780Watermelon (97103) v2cmawmbB572
CmaCh20G006780Watermelon (97103) v2cmawmbB581
CmaCh20G006780Wax gourdcmawgoB0678
CmaCh20G006780Wax gourdcmawgoB0695
CmaCh20G006780Cucurbita maxima (Rimu)cmacmaB155
CmaCh20G006780Cucurbita maxima (Rimu)cmacmaB445
CmaCh20G006780Cucumber (Gy14) v1cgycmaB0217
CmaCh20G006780Cucumber (Gy14) v1cgycmaB0303