Carg16100 (gene) Silver-seed gourd

Overview
NameCarg16100
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger ccch domain-containing protein 18
LocationCucurbita_argyrosperma_scaffold_068 : 98538 .. 100724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCTTGAATCCTCAATTTACTGTTTGTTCTTGATTCTTTCTTGTTCTTCAATTTACTGTTTGTTCTTGATTCTTTCTTGTTCTTCAATTTACTGAGCAAAATGGAATTACCAGAGCCAACAAATTTATTGTTTCAAAGAATCTGCGAAATGGATGCGGAATGTGCGACCACGATCATCGAGTACATTATTCTAAACACAGACGATCGCGATATGATCCGATTGGCCTTCTGTCCTGATACTGTTCTTCAATCTTTCATCGAAGACGCCAAATCCGACCTAGGAATCACTGAAATGGTATCCTCTGCGCTATCCCCTGTTTCGATTTCCGACCCCTATTTTCCCTTATCCGTGTACCGCCGCGACCCTTCCTCTCGATTATTCCCCTCTGAGTCCTACTCCGATTTGGACATTCAAAACCCTATGCAGTGTCTTTCCCTGGAGGATCAATTCGATTCGGTGAATCCGGTTGGGCTGCGGGGATTTCCGTTTAAGATTTGTCACTATTTCAGCAAAGGATATTGTAAGCACGGGAGTAAATGCAGGTATTTCCACGGGCAAGTTAAGGCGGCGAATGCGAATCACGAGCAGCGAGTTATCCTTCGTGGTAAGGCGCTTGAAAACCTGGAAATGGAAATCGTTGGGCTTCTGAAATCCCGTCGAGGGAGTCCGATTTCAATCGCGTCTTTGCCGATGGTTTATTATGATTTCTACGGCAAGAATCTTCAAGCCGACGGGTATCTTACTGAAGGCCGTGGATTTGGGAGGGCTTGTTTTAGTCTCACTAGACTTCTCTCTAGTTTGAACTCCATTTGTGTTCTTGACAGGTTAATTCTCCGTTTCTTGTTTGTAATTTCATGGCTTCTTTGTTTGTTTCATCTCTAAATTTAGGGTTTCTTTTAGGCCACATGGGCAACATTCGTTAATCTTGGTCGAGGATATTGGAAAGTACATAGATTCCTCTGAAAACATTGCTCGACAGATTTACATTACATTTCCAGCTGCTAGTACTTTCACAGAACAGGATGTTTCAAGCTACTTCGAGTAAGAATGTGAAAATTTTATATGAATCTTGTTGATCTTGGGTGTGTTTATTTACTGAATTTATGCTGTTCTTTAAGCAAATATGGACCTGTTCAAGATGTTAAGATACCATACCAACAGACCAGGATGTATGGATTTGTAACATTCGTTTATGCTGAGACAGCCAGACATGTTCTCTCAATCAGAACTACTCATTTTGTCTGTGGTGCTCAAGTTCTTGTTAAGCCTTACAAGGAGAAGTCTAGGCTTATACAGAGGTAATTTTAACAGCATTTTGAGAAGGGAAGGCTGGTTATTTTGTGAAAATTTGAACCTACAACATGTTTTGTTGTTTGTACAGAAATAATGCTGAAAATAACAGTGAAGGAAACATGGAAGAAGCCAATTCTAGTAAGGAAAAATAGTGTCATTTTGGTTGTTTGGGAACCCCTTTTCTTGCATGTTTAAACCATATGCTCAAATTACTTGCAGTGCCAAGAGCCACTAATGATTCACTGACAAGGATTCTGATTGATGAAAATGAGCTACAGCGACAACGCTCTGAGCTTTTTTTGTCATTGGTGAATTCAACAAACGAATGGACACATTCATCAGGTTTCGAAGCTTAATTTTCAACAACTAAATCGTTATTATCATACGAGACTATGATCTGTTTGGGTTTGGTTGTGGACTGTTTTGCTTATGGCATTGTGTTTAGGCAATGCAGAAGGGCCAGACCTGTTATCCACTGATCAGCAGCAGCATGAACAGCTACCTTCATTGACTGACCAAGCTGATGATGATAGGTTTGTTAAAAAGGCTATGTGATTTGTGGTTTACAATGCTGTTTGCTAAGCAATGTGATGACACTGTGGTTTTGCAGCACAACACAAGAGGTTGATCTACCGGAGAGCCCGTTTGCAGCTCGGATGAGGAGGTAAATTTGAACCGAGTTTATAGATGAAGATGTTGATAGAATAAGAAGATACAAGACTACTACATTTTTCCCCCCACAATCGGTTTAGTTTACGACAGATTTTATGTGTTTGTTTCTGGTTTCTAATAGGTAGAAGAAAAGTGGATTATTCTGACTAAGAAGTAGAGATGGATTTGTTTTGTTTTTCTAAGAAAAGTTTGCCATTTCCTAGAATAGTGTGTTTTTTGA

mRNA sequence

TTTCTTGAATCCTCAATTTACTGTTTGTTCTTGATTCTTTCTTGTTCTTCAATTTACTGTTTGTTCTTGATTCTTTCTTGTTCTTCAATTTACTGAGCAAAATGGAATTACCAGAGCCAACAAATTTATTGTTTCAAAGAATCTGCGAAATGGATGCGGAATGTGCGACCACGATCATCGAGTACATTATTCTAAACACAGACGATCGCGATATGATCCGATTGGCCTTCTGTCCTGATACTGTTCTTCAATCTTTCATCGAAGACGCCAAATCCGACCTAGGAATCACTGAAATGGTATCCTCTGCGCTATCCCCTGTTTCGATTTCCGACCCCTATTTTCCCTTATCCGTGTACCGCCGCGACCCTTCCTCTCGATTATTCCCCTCTGAGTCCTACTCCGATTTGGACATTCAAAACCCTATGCAGTGTCTTTCCCTGGAGGATCAATTCGATTCGGTGAATCCGGTTGGGCTGCGGGGATTTCCGTTTAAGATTTGTCACTATTTCAGCAAAGGATATTGTAAGCACGGGAGTAAATGCAGGTATTTCCACGGGCAAGTTAAGGCGGCGAATGCGAATCACGAGCAGCGAGTTATCCTTCGTGGTAAGGCGCTTGAAAACCTGGAAATGGAAATCGTTGGGCTTCTGAAATCCCGTCGAGGGAGTCCGATTTCAATCGCGTCTTTGCCGATGGTTTATTATGATTTCTACGGCAAGAATCTTCAAGCCGACGGGTATCTTACTGAAGGCCGTGGATTTGGGAGGGCTTGTTTTAGTCTCACTAGACTTCTCTCTAGTTTGAACTCCATTTGTGTTCTTGACAGGCCACATGGGCAACATTCGTTAATCTTGGTCGAGGATATTGGAAAGTACATAGATTCCTCTGAAAACATTGCTCGACAGATTTACATTACATTTCCAGCTGCTAGTACTTTCACAGAACAGGATGTTTCAAGCTACTTCGACAAATATGGACCTGTTCAAGATGTTAAGATACCATACCAACAGACCAGGATGTATGGATTTGTAACATTCGTTTATGCTGAGACAGCCAGACATGTTCTCTCAATCAGAACTACTCATTTTGTCTGTGGTGCTCAAGTTCTTGTTAAGCCTTACAAGGAGAAGTCTAGGCTTATACAGAGAAATAATGCTGAAAATAACAGTGAAGGAAACATGGAAGAAGCCAATTCTATGCCAAGAGCCACTAATGATTCACTGACAAGGATTCTGATTGATGAAAATGAGCTACAGCGACAACGCTCTGAGCTTTTTTTGTCATTGGTGAATTCAACAAACGAATGGACACATTCATCAGGCAATGCAGAAGGGCCAGACCTGTTATCCACTGATCAGCAGCAGCATGAACAGCTACCTTCATTGACTGACCAAGCTGATGATGATAGCACAACACAAGAGGTTGATCTACCGGAGAGCCCGTTTGCAGCTCGGATGAGGAGGTAAATTTGAACCGAGTTTATAGATGAAGATGTTGATAGAATAAGAAGATACAAGACTACTACATTTTTCCCCCCACAATCGGTTTAGTTTACGACAGATTTTATGTGTTTGTTTCTGGTTTCTAATAGGTAGAAGAAAAGTGGATTATTCTGACTAAGAAGTAGAGATGGATTTGTTTTGTTTTTCTAAGAAAAGTTTGCCATTTCCTAGAATAGTGTGTTTTTTGA

Coding sequence (CDS)

ATGGAATTACCAGAGCCAACAAATTTATTGTTTCAAAGAATCTGCGAAATGGATGCGGAATGTGCGACCACGATCATCGAGTACATTATTCTAAACACAGACGATCGCGATATGATCCGATTGGCCTTCTGTCCTGATACTGTTCTTCAATCTTTCATCGAAGACGCCAAATCCGACCTAGGAATCACTGAAATGGTATCCTCTGCGCTATCCCCTGTTTCGATTTCCGACCCCTATTTTCCCTTATCCGTGTACCGCCGCGACCCTTCCTCTCGATTATTCCCCTCTGAGTCCTACTCCGATTTGGACATTCAAAACCCTATGCAGTGTCTTTCCCTGGAGGATCAATTCGATTCGGTGAATCCGGTTGGGCTGCGGGGATTTCCGTTTAAGATTTGTCACTATTTCAGCAAAGGATATTGTAAGCACGGGAGTAAATGCAGGTATTTCCACGGGCAAGTTAAGGCGGCGAATGCGAATCACGAGCAGCGAGTTATCCTTCGTGGTAAGGCGCTTGAAAACCTGGAAATGGAAATCGTTGGGCTTCTGAAATCCCGTCGAGGGAGTCCGATTTCAATCGCGTCTTTGCCGATGGTTTATTATGATTTCTACGGCAAGAATCTTCAAGCCGACGGGTATCTTACTGAAGGCCGTGGATTTGGGAGGGCTTGTTTTAGTCTCACTAGACTTCTCTCTAGTTTGAACTCCATTTGTGTTCTTGACAGGCCACATGGGCAACATTCGTTAATCTTGGTCGAGGATATTGGAAAGTACATAGATTCCTCTGAAAACATTGCTCGACAGATTTACATTACATTTCCAGCTGCTAGTACTTTCACAGAACAGGATGTTTCAAGCTACTTCGACAAATATGGACCTGTTCAAGATGTTAAGATACCATACCAACAGACCAGGATGTATGGATTTGTAACATTCGTTTATGCTGAGACAGCCAGACATGTTCTCTCAATCAGAACTACTCATTTTGTCTGTGGTGCTCAAGTTCTTGTTAAGCCTTACAAGGAGAAGTCTAGGCTTATACAGAGAAATAATGCTGAAAATAACAGTGAAGGAAACATGGAAGAAGCCAATTCTATGCCAAGAGCCACTAATGATTCACTGACAAGGATTCTGATTGATGAAAATGAGCTACAGCGACAACGCTCTGAGCTTTTTTTGTCATTGGTGAATTCAACAAACGAATGGACACATTCATCAGGCAATGCAGAAGGGCCAGACCTGTTATCCACTGATCAGCAGCAGCATGAACAGCTACCTTCATTGACTGACCAAGCTGATGATGATAGCACAACACAAGAGGTTGATCTACCGGAGAGCCCGTTTGCAGCTCGGATGAGGAGGTAA

Protein sequence

MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDLGITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLEDQFDSVNPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNMEEANSMPRATNDSLTRILIDENELQRQRSELFLSLVNSTNEWTHSSGNAEGPDLLSTDQQQHEQLPSLTDQADDDSTTQEVDLPESPFAARMRR
Homology
[Close]
BLAST of Carg16100 vs. NCBI nr
Match: XP_022943887.1 (zinc finger CCCH domain-containing protein 18-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 889.8 bits (2298), Expect = 3.9e-255
Identity = 449/454 (98.90%), Postives = 450/454 (99.12%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60
           MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL
Sbjct: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60

Query: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLEDQFDSV 120
           GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPM+ LSLEDQFDSV
Sbjct: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMRFLSLEDQFDSV 120

Query: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180
           NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV
Sbjct: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180

Query: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240
           GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL
Sbjct: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240

Query: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300
           DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP
Sbjct: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300

Query: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360
           YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM
Sbjct: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360

Query: 361 EEANSMPRATNDSLTRILIDENELQRQRSELFLSLVNSTNEWTHSSGNAEGPDLLSTDQQ 420
           EEANSMPRATNDSLTRILIDENELQRQRSEL LSLVNSTNEWTHSSGNAEGPDLLSTDQQ
Sbjct: 361 EEANSMPRATNDSLTRILIDENELQRQRSELLLSLVNSTNEWTHSSGNAEGPDLLSTDQQ 420

Query: 421 QHEQLPSLTDQADDDSTTQEVDLPESPFAARMRR 455
           QHEQLPSLTDQADDDSTTQEVDLPESPFAA  RR
Sbjct: 421 QHEQLPSLTDQADDDSTTQEVDLPESPFAASTRR 454

[Close]
BLAST of Carg16100 vs. NCBI nr
Match: XP_022943888.1 (zinc finger CCCH domain-containing protein 18-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 878.2 bits (2268), Expect = 1.2e-251
Identity = 446/454 (98.24%), Postives = 447/454 (98.46%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60
           MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL
Sbjct: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60

Query: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLEDQFDSV 120
           GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPM+ LSLEDQFDSV
Sbjct: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMRFLSLEDQFDSV 120

Query: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180
           NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV
Sbjct: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180

Query: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240
           GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL
Sbjct: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240

Query: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300
           DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP
Sbjct: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300

Query: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360
           YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM
Sbjct: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360

Query: 361 EEANSMPRATNDSLTRILIDENELQRQRSELFLSLVNSTNEWTHSSGNAEGPDLLSTDQQ 420
           EEANSMPRATNDSLTRILIDENELQRQRSEL LSLVNSTNEWTHSS   EGPDLLSTDQQ
Sbjct: 361 EEANSMPRATNDSLTRILIDENELQRQRSELLLSLVNSTNEWTHSS---EGPDLLSTDQQ 420

Query: 421 QHEQLPSLTDQADDDSTTQEVDLPESPFAARMRR 455
           QHEQLPSLTDQADDDSTTQEVDLPESPFAA  RR
Sbjct: 421 QHEQLPSLTDQADDDSTTQEVDLPESPFAASTRR 451

[Close]
BLAST of Carg16100 vs. NCBI nr
Match: XP_023512131.1 (zinc finger CCCH domain-containing protein 18-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 873.6 bits (2256), Expect = 2.9e-250
Identity = 443/457 (96.94%), Postives = 448/457 (98.03%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60
           MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL
Sbjct: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60

Query: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLEDQFDSV 120
           GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQ LSLEDQF+SV
Sbjct: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQFLSLEDQFESV 120

Query: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180
           NPVGLRGFPFKICHYF KGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV
Sbjct: 121 NPVGLRGFPFKICHYFRKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180

Query: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240
           GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL
Sbjct: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240

Query: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300
           DRPHGQHSLILVEDIGK+IDSSENIARQIYITFPAASTFTEQDVS+YFDKYGPVQDVKIP
Sbjct: 241 DRPHGQHSLILVEDIGKHIDSSENIARQIYITFPAASTFTEQDVSNYFDKYGPVQDVKIP 300

Query: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360
           YQQTRMYGFVTFVYAETARHVLS+RTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM
Sbjct: 301 YQQTRMYGFVTFVYAETARHVLSVRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360

Query: 361 EEANSMPRATNDSLTRILIDENELQRQRSELFLSLVNSTNEWTHSSGNAEGP---DLLST 420
           EEANSMPRATNDSLTRILIDENELQRQRSEL LSLV+STNEWT SSGNAEGP   DLLST
Sbjct: 361 EEANSMPRATNDSLTRILIDENELQRQRSELLLSLVDSTNEWTRSSGNAEGPELGDLLST 420

Query: 421 DQQQHEQLPSLTDQADDDSTTQEVDLPESPFAARMRR 455
           DQQQHEQLPSLTDQADDDSTTQEVDLPESPFAA  RR
Sbjct: 421 DQQQHEQLPSLTDQADDDSTTQEVDLPESPFAAPTRR 457

[Close]
BLAST of Carg16100 vs. NCBI nr
Match: XP_023512132.1 (zinc finger CCCH domain-containing protein 18-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 864.4 bits (2232), Expect = 1.7e-247
Identity = 438/454 (96.48%), Postives = 443/454 (97.58%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60
           MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL
Sbjct: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60

Query: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLEDQFDSV 120
           GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQ LSLEDQF+SV
Sbjct: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQFLSLEDQFESV 120

Query: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180
           NPVGLRGFPFKICHYF KGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV
Sbjct: 121 NPVGLRGFPFKICHYFRKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180

Query: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240
           GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL
Sbjct: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240

Query: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300
           DRPHGQHSLILVEDIGK+IDSSENIARQIYITFPAASTFTEQDVS+YFDKYGPVQDVKIP
Sbjct: 241 DRPHGQHSLILVEDIGKHIDSSENIARQIYITFPAASTFTEQDVSNYFDKYGPVQDVKIP 300

Query: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360
           YQQTRMYGFVTFVYAETARHVLS+RTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM
Sbjct: 301 YQQTRMYGFVTFVYAETARHVLSVRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360

Query: 361 EEANSMPRATNDSLTRILIDENELQRQRSELFLSLVNSTNEWTHSSGNAEGPDLLSTDQQ 420
           EEANSMPRATNDSLTRILIDENELQRQRSEL LSLV+STNEWT SS   E  DLLSTDQQ
Sbjct: 361 EEANSMPRATNDSLTRILIDENELQRQRSELLLSLVDSTNEWTRSSEGPELGDLLSTDQQ 420

Query: 421 QHEQLPSLTDQADDDSTTQEVDLPESPFAARMRR 455
           QHEQLPSLTDQADDDSTTQEVDLPESPFAA  RR
Sbjct: 421 QHEQLPSLTDQADDDSTTQEVDLPESPFAAPTRR 454

[Close]
BLAST of Carg16100 vs. NCBI nr
Match: XP_022985797.1 (zinc finger CCCH domain-containing protein 18-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 858.6 bits (2217), Expect = 9.6e-246
Identity = 437/457 (95.62%), Postives = 444/457 (97.16%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60
           MELPEPTNLLFQRICE+DAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL
Sbjct: 1   MELPEPTNLLFQRICELDAECATTIIEYIILNTDDRDMIRLAFCPDTVLQSFIEDAKSDL 60

Query: 61  GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLEDQFDSV 120
           GITEMVSSALSPVSISDPY PLSVYRRDPSSRLFPSESYSDLDIQNPMQ LSLEDQF+SV
Sbjct: 61  GITEMVSSALSPVSISDPYLPLSVYRRDPSSRLFPSESYSDLDIQNPMQFLSLEDQFESV 120

Query: 121 NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIV 180
           N VGLR FP KICHYFSKGYCKHGSKCRYFHGQVKAA+ANHEQRVILRGKALENLEMEIV
Sbjct: 121 NTVGLRRFPLKICHYFSKGYCKHGSKCRYFHGQVKAAHANHEQRVILRGKALENLEMEIV 180

Query: 181 GLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240
           GLLKSRRGSPISIASLP+VYY+FYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL
Sbjct: 181 GLLKSRRGSPISIASLPIVYYEFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVL 240

Query: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300
           DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP
Sbjct: 241 DRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIP 300

Query: 301 YQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNM 360
           YQQ+RMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENN EGNM
Sbjct: 301 YQQSRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNREGNM 360

Query: 361 EEANSMPRATNDSLTRILIDENELQRQRSELFLSLVNSTNEWTHSSGNAEGP---DLLST 420
           EEANSMPRATNDSLTRILIDENELQRQRSELFLS V+STNEWTHSSGNAEGP   DLLST
Sbjct: 361 EEANSMPRATNDSLTRILIDENELQRQRSELFLSFVDSTNEWTHSSGNAEGPELEDLLST 420

Query: 421 DQQQHEQLPSLTDQADDDSTTQEVDLPESPFAARMRR 455
           DQQQHEQLPSLTDQADDDSTTQEVDLPES FAA  RR
Sbjct: 421 DQQQHEQLPSLTDQADDDSTTQEVDLPESLFAAPTRR 457

[Close]
BLAST of Carg16100 vs. TAIR10
Match: AT2G05160.1 (CCCH-type zinc fingerfamily protein with RNA-binding domain)

HSP 1 Score: 295.8 bits (756), Expect = 4.5e-80
Identity = 175/395 (44.30%), Postives = 232/395 (58.73%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL--NTDDRDMIRLAFCPDTVLQSFIEDAKS 60
           M   E  N++  RI +++ E A  I  Y++L     +RDMIRLAFCPD+V+ S I   K 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 61  DLGITEMVSSALSPVSISDPYF-------PLSVYRRDPSSRLFPSESYSDLDIQNPMQCL 120
           +L        +     I  P F       PLSV    P    F   S     +QN +Q L
Sbjct: 61  ELARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNLQFL 120

Query: 121 SLEDQFDSV--------------------NPVGLRGFPFKICHYFSKGYCKHGSKCRYFH 180
           + ED   S                         L  FP KICHYF+KG+CKHG+ CRYFH
Sbjct: 121 NFEDPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFH 180

Query: 181 GQV--------KAANANH---EQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPMVY 240
           GQ+        +  N N+   ++  ++   +LE LE EI+ LLK RRG+PISIASLPM+Y
Sbjct: 181 GQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMY 240

Query: 241 YDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVLDRPHGQHSLILVEDIGKYI 300
           Y+ YG+ LQA+GYLTE +  G+A +SLT+LL+ L N+I ++DRPHGQHS+IL ED  K++
Sbjct: 241 YEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFV 300

Query: 301 DSSENI---------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFV 346
           + +            +RQIY+TFPA S+FTE DVS YF  YG V+DV+IP QQ RMYGFV
Sbjct: 301 EYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFV 360

[Close]
BLAST of Carg16100 vs. TAIR10
Match: AT3G52980.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 258.8 bits (660), Expect = 6.1e-69
Identity = 161/370 (43.51%), Postives = 218/370 (58.92%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTD--DRDMIRLAFCPDTVLQSFIEDAKS 60
           M   E  N++  RI +++ E A+ II Y++L  D  DRDMIRLAFCPD+V++S I   K 
Sbjct: 1   MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60

Query: 61  DLGITEMVSSALSPVSISDPYF---------PLSVYRRDPSSRLFPS---ESYSDLDI-- 120
           +L      ++  S   I    F          L V    PS     +   E+ +D+D   
Sbjct: 61  ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDMDSSL 120

Query: 121 -QNPMQCLSLEDQFDSV--------------------NPVGLRGFPFKICHYFSKGYCKH 180
             N    L  ED   S                       + L  FP KICHYF+KG+CKH
Sbjct: 121 KDNVQYFLDFEDSVTSPEFSTSFFSQKKQSLSLRTSRRSLSLPEFPLKICHYFNKGFCKH 180

Query: 181 GSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPMVYYDF 240
           G+ C          N + E+ V+  G +LE LE EI+ LLKSRRG+PISIA LPM+Y++ 
Sbjct: 181 GNNCH--------NNLSDEEHVVSPG-SLEKLEREIIELLKSRRGAPISIAFLPMMYHEK 240

Query: 241 YGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVLDRPHGQHSLILVEDIGKYI--- 300
           YG++LQA+GYLTE +  G+A FSLT+LL+ L N+I ++DRPHGQHS+IL ED+ K++   
Sbjct: 241 YGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQHSVILAEDVSKFVEYT 300

Query: 301 -DSSENIA-----RQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFV 324
            + SE+ A     RQ+Y+TFPA S+FTE DVS+YF + GPV+DV+IP QQ RMYGFVTFV
Sbjct: 301 GERSEHGAILAGSRQVYLTFPAESSFTEHDVSNYFSEVGPVEDVRIPCQQKRMYGFVTFV 360

[Close]
BLAST of Carg16100 vs. TAIR10
Match: AT3G51950.1 (Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-34
Identity = 148/520 (28.46%), Postives = 230/520 (44.23%), Query Frame = 0 

Query: 5   EPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSDLGI- 64
           E T ++  RI  +D E A+ I+  ++L +  +++MIRLAF P+T++ S I  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 65  ----------TEMVS------SALSPVSISDPYFPL-SVYRRDPSS--RLFPSESYSDLD 124
                      E++S      S+L+P S+  P++       RD ++   L    +    D
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASL--PFYANGGRSSRDLTNDFELMDDMNSRSTD 124

Query: 125 IQNPMQCLSLEDQFDSV-----NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAAN 184
               +   S     D +     + +G  G P   C YF++G+CK+G+ CR+ H    A  
Sbjct: 125 FLGSVHARSGSCVLDGLGYGGDSDLGFGGVP---CSYFARGFCKNGASCRFVHSDGGADL 184

Query: 185 ANHEQRVILRGKALENLEMEIVGLLKSRRGSP------ISIASLPMVYYDFYGKNLQADG 244
                R               + LL+S    P      ++ +SLP   +   G NLQ + 
Sbjct: 185 VGSPSR---------------IELLRSNSVPPRLAHHFMTRSSLPS--FSTKGVNLQQN- 244

Query: 245 YLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKY-------IDSSE-- 304
                                       D      +L++ +++ K        ID S   
Sbjct: 245 ----------------------------DVQRAAAALMIGDELQKLGRWRPERIDLSAMA 304

Query: 305 -NIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVL 364
              +RQIY+TFPA S F E+DVS+YF  +GPVQDV+IPYQQ RM+GFVTFVY ET + +L
Sbjct: 305 CPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSIL 364

Query: 365 SIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNMEEA--NSMPR----------AT 424
           +    HFVC ++VLVKPYKEK ++  +      +E  +     +S PR           T
Sbjct: 365 AKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNT 424

Query: 425 NDSLTRILIDENELQRQRSELF-LSL--------------VNSTNEWTHSSGNAEGPDLL 451
            D L R   +E  L+ Q   L  L L              ++S N ++ S  +     ++
Sbjct: 425 QDVLWRSKFEEEILELQSRRLMNLQLLDVKKHFQLNSPTNIHSPNPFSQSLISPRPLSVI 473

[Close]
BLAST of Carg16100 vs. TAIR10
Match: AT1G51520.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-33
Identity = 108/381 (28.35%), Postives = 177/381 (46.46%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  +PT+++F +I   + E A+ +I+Y +L + + RD+IR+AF PD+++Q+F + AK D
Sbjct: 1   MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60

Query: 61  L-----GITEMVSSALSPVSISDPYFPLSVYRRDPSSRLFPSESYSDLDIQNPMQCLSLE 120
           L     G +  ++     +S S P      + R+PS+ L  S + +           +L 
Sbjct: 61  LGFSSNGFSRPINIHGQSLSSSSPRNGFLEFSRNPSNPLSSSLTLN-----------TLR 120

Query: 121 DQFDSVNPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALEN 180
           D   + N    R                            +   AN  +R      A   
Sbjct: 121 DNKPNFNSSPFRESXXXXXXXXXXXXXXXXXXXXXLFTNDEDPFANSHKRSFSANDACFE 180

Query: 181 LEMEIVGLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL 240
            E    G        P             +G   + D Y+ EG    +     + + +  
Sbjct: 181 SEEPWFGGGNGCHQFPQGGLVDGFGSSGVFGSPSEMD-YMLEGMMRMKLAQQKSMVAAQF 240

Query: 241 NSICVLDRPHGQHSLILVEDIGKYI-----DSSENIARQIYITFPAASTFTEQDVSSYFD 300
            + C     H   S    E+ G Y      +  +++++QIY+TFP+ S+FT++DVS+YF 
Sbjct: 241 MAACGSPMLHRHGSGHFGEECGNYFSQGRHEREDSVSKQIYLTFPSESSFTDEDVSTYFR 300

Query: 301 KYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQR 360
            +G V DV+IPYQQ RMYGFVTF  AET R +L+    HF+C ++VLVKPYKEK +++Q+
Sbjct: 301 DFGLVDDVRIPYQQQRMYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQK 360

Query: 361 NNAENNSEGNMEEANSMPRAT 371
              +   E  +E  N  P ++
Sbjct: 361 RQQQQLHE-LLERGNYSPSSS 368

[Close]
BLAST of Carg16100 vs. TAIR10
Match: AT3G21100.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-30
Identity = 135/466 (28.97%), Postives = 205/466 (43.99%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  +PT++LF +I  ++ + A+ II Y++L +    D++RLA  P+T+LQS    AKS 
Sbjct: 1   MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60

Query: 61  LGITEM-VSSALSPVS-ISDPY----------FPLSVYRRDPSSRLF--PSESYSD---- 120
           LG++    SSA SP++ IS P            P + + R+P S  F  P    S+    
Sbjct: 61  LGLSSNGSSSASSPLNPISRPINIHRHSLSHSSPGNGFSRNPLSPSFATPGSLGSNPNMI 120

Query: 121 ---------------------------LDIQNPMQCLS-LEDQFDSVNPVGLRGFPFKI- 180
                                      LD Q     LS L +     N   L  F F   
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXFLDEQQLGNYLSFLNESSSKNNDESLDPFGFSAD 180

Query: 181 ---CHYFSKGYCKH-------------GSKCRYFHGQV-----------KAANANHEQRV 240
               H   + +                G   R+ HG +                + +Q  
Sbjct: 181 NGDAHLHKRSFSASDACFGSEEPGFGGGGYNRFLHGGLGDDFDSPGGFGSPDYVSRQQEE 240

Query: 241 ILRGKALENLEMEIVGLLKSRRGSPISI-ASLPMVYYDFYGKNLQADGYLTEGRGFGRAC 300
           I+R K  +   M     L +  GSP+S    L  + +        A  +  EG  FG   
Sbjct: 241 IVRMKMAQRQRMAAAQYL-AATGSPMSYEKGLNFLLHQRNAHRSGAGQFGEEGYWFGSP- 300

Query: 301 FSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKYIDSSENIARQIYITFPAASTFTEQDV 360
                               G+H       +G   D S + ++QIY+TFPA S+FT++DV
Sbjct: 301 --------------------GRHERDEFMGMG---DKSNSASKQIYLTFPADSSFTDEDV 360

Query: 361 SSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKS 390
           S+YF  +GPVQDV+IPYQQ RM+GFVTF+++ET R +L+    HF+C ++VLVKPYKEK 
Sbjct: 361 SNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILARGNPHFICDSRVLVKPYKEKG 420

[Close]
BLAST of Carg16100 vs. Swiss-Prot
Match: sp|Q9SJ41|C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 8.1e-79
Identity = 175/395 (44.30%), Postives = 232/395 (58.73%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL--NTDDRDMIRLAFCPDTVLQSFIEDAKS 60
           M   E  N++  RI +++ E A  I  Y++L     +RDMIRLAFCPD+V+ S I   K 
Sbjct: 1   MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60

Query: 61  DLGITEMVSSALSPVSISDPYF-------PLSVYRRDPSSRLFPSESYSDLDIQNPMQCL 120
           +L        +     I  P F       PLSV    P    F   S     +QN +Q L
Sbjct: 61  ELARNSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVSPPMKTGFWENSTEMDTLQNNLQFL 120

Query: 121 SLEDQFDSV--------------------NPVGLRGFPFKICHYFSKGYCKHGSKCRYFH 180
           + ED   S                         L  FP KICHYF+KG+CKHG+ CRYFH
Sbjct: 121 NFEDPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFH 180

Query: 181 GQV--------KAANANH---EQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPMVY 240
           GQ+        +  N N+   ++  ++   +LE LE EI+ LLK RRG+PISIASLPM+Y
Sbjct: 181 GQIIPERESFAQMFNPNNNLSDEEHVVSPVSLEKLEGEIIELLKLRRGAPISIASLPMMY 240

Query: 241 YDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSL-NSICVLDRPHGQHSLILVEDIGKYI 300
           Y+ YG+ LQA+GYLTE +  G+A +SLT+LL+ L N+I ++DRPHGQHS+IL ED  K++
Sbjct: 241 YEKYGRTLQAEGYLTESQRHGKAGYSLTKLLARLKNTIRLVDRPHGQHSVILAEDASKFV 300

Query: 301 DSSENI---------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFV 346
           + +            +RQIY+TFPA S+FTE DVS YF  YG V+DV+IP QQ RMYGFV
Sbjct: 301 EYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFV 360

[Close]
BLAST of Carg16100 vs. Swiss-Prot
Match: sp|Q6ZK57|C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 3.7e-63
Identity = 129/245 (52.65%), Postives = 162/245 (66.12%), Query Frame = 0 

Query: 133 CHYFSKGYCKHGSKCRYFHGQV-------KAANA---NHEQRVILRGKALENLEMEIVGL 192
           CHYFSKG CK+G  C Y H QV        A N    NH+   +  G +LE LEMEI  L
Sbjct: 266 CHYFSKGICKNGQNCHYSHHQVYQDALAGAAINGDVYNHQPGGVTPG-SLETLEMEITEL 325

Query: 193 LKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDR 252
           L SRRG P+SIASLP +Y + YGK LQADGYLTE +  G+A +SLTRLLS LN I V++R
Sbjct: 326 LNSRRGQPVSIASLPTLYGEKYGKGLQADGYLTESQRHGKAGYSLTRLLSRLNKIRVIER 385

Query: 253 PHGQHSLILVEDIGKYID-------------SSENIARQIYITFPAASTFTEQDVSSYFD 312
           PHGQHS++L ED  KY+D             S    + QIY+TFPA STF E DV++YF 
Sbjct: 386 PHGQHSVVLAEDAAKYMDFRGXXXXXXXXXGSVPASSHQIYLTFPAESTFAEDDVANYFG 445

Query: 313 KYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQR 355
           +YGPV+DV+IP Q+ RM+GFV+F   ET   +L  R  HF+CG++VLVKPY+EKS+ + R
Sbjct: 446 QYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDR 505

[Close]
BLAST of Carg16100 vs. Swiss-Prot
Match: sp|Q84ZT0|C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.8e-47
Identity = 107/229 (46.72%), Postives = 145/229 (63.32%), Query Frame = 0 

Query: 131 KICHY-FSKGYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIVGLLKSRRGS 190
           K CH+ F +GYCK G  C++FHG V      H  R +    +L  L+MEI  LL      
Sbjct: 180 KPCHFHFFRGYCKKGVNCQFFHGSVPEL---HNPRQVHPFASLSKLDMEIRELLIG-IPP 239

Query: 191 PISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSL 250
           P+++  LP +Y++ YGK L+ DG+LTE +  GR   SLT LL  LN+I V++R HGQ+ +
Sbjct: 240 PVAVDRLPSMYFEKYGKPLRPDGWLTESQQHGRTGCSLTSLLMGLNTIRVVEREHGQYHV 299

Query: 251 ILVEDI-GKYID-----SSENI------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDV 310
           +LVED   KY+D      S N+      + QIY+TFP  S FT+ DV +YF ++GPV  V
Sbjct: 300 VLVEDARKKYMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGV 359

Query: 311 KIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRL 347
           +IPYQ+ RM+GFV+F+Y ET R +LS  T HF+CG +VLVK Y EKS L
Sbjct: 360 RIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404

[Close]
BLAST of Carg16100 vs. Swiss-Prot
Match: sp|Q9SV09|C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-33
Identity = 148/520 (28.46%), Postives = 230/520 (44.23%), Query Frame = 0 

Query: 5   EPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSDLGI- 64
           E T ++  RI  +D E A+ I+  ++L +  +++MIRLAF P+T++ S I  AK +LG+ 
Sbjct: 5   EATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLM 64

Query: 65  ----------TEMVS------SALSPVSISDPYFPL-SVYRRDPSS--RLFPSESYSDLD 124
                      E++S      S+L+P S+  P++       RD ++   L    +    D
Sbjct: 65  NCSRSPWSHQDELISPKNNRGSSLNPASL--PFYANGGRSSRDLTNDFELMDDMNSRSTD 124

Query: 125 IQNPMQCLSLEDQFDSV-----NPVGLRGFPFKICHYFSKGYCKHGSKCRYFHGQVKAAN 184
               +   S     D +     + +G  G P   C YF++G+CK+G+ CR+ H    A  
Sbjct: 125 FLGSVHARSGSCVLDGLGYGGDSDLGFGGVP---CSYFARGFCKNGASCRFVHSDGGADL 184

Query: 185 ANHEQRVILRGKALENLEMEIVGLLKSRRGSP------ISIASLPMVYYDFYGKNLQADG 244
                R               + LL+S    P      ++ +SLP   +   G NLQ + 
Sbjct: 185 VGSPSR---------------IELLRSNSVPPRLAHHFMTRSSLPS--FSTKGVNLQQN- 244

Query: 245 YLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSLILVEDIGKY-------IDSSE-- 304
                                       D      +L++ +++ K        ID S   
Sbjct: 245 ----------------------------DVQRAAAALMIGDELQKLGRWRPERIDLSAMA 304

Query: 305 -NIARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVL 364
              +RQIY+TFPA S F E+DVS+YF  +GPVQDV+IPYQQ RM+GFVTFVY ET + +L
Sbjct: 305 CPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSIL 364

Query: 365 SIRTTHFVCGAQVLVKPYKEKSRLIQRNNAENNSEGNMEEA--NSMPR----------AT 424
           +    HFVC ++VLVKPYKEK ++  +      +E  +     +S PR           T
Sbjct: 365 AKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQTTERELSPTGLDSSPRDVLGGRGFYNNT 424

Query: 425 NDSLTRILIDENELQRQRSELF-LSL--------------VNSTNEWTHSSGNAEGPDLL 451
            D L R   +E  L+ Q   L  L L              ++S N ++ S  +     ++
Sbjct: 425 QDVLWRSKFEEEILELQSRRLMNLQLLDVKKHFQLNSPTNIHSPNPFSQSLISPRPLSVI 473

[Close]
BLAST of Carg16100 vs. Swiss-Prot
Match: sp|Q0D3J9|C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-29
Identity = 121/458 (26.42%), Postives = 186/458 (40.61%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T ++F RI  +D + A  I+ ++++ +  +++MIRLAF P+ +L + +  A+ +
Sbjct: 1   MDAYEATKVVFSRIQALDPDHAAKIMGFLLIQDHGEKEMIRLAFGPEALLHTVMAKARKE 60

Query: 61  LGI---------TEMVSSAL--------------------SPVSISDP--YFPLSVYRRD 120
           LG+         T + ++A                     SP+S+S P  + P  V+ R+
Sbjct: 61  LGLLPASGPGTPTSVAAAAAAAHSPFMLSRQNSGRCGTAPSPLSVSSPSSWAPPPVFSRN 120

Query: 121 PSSRLFPSESYSDL--DIQNP----------------MQCLSLEDQFDSVNPVGL----- 180
            S      E    L  ++ +P                M  L L+DQ   +N  G+     
Sbjct: 121 NSISNGAGEEMVGLGDELISPANGGGPPSPFFGGDPLMDELQLQDQLAFLNEGGVPAGHQ 180

Query: 181 -----------------------------------------------RGFPFKICHYFSK 240
                                                           G  +K C Y+++
Sbjct: 181 MPMFDGGECRSPGGGDGGLFSYNLGWANGGPGHRRSASVSELCLGGADGLGWKPCLYYAR 240

Query: 241 GYCKHGSKCRYFHGQVKAANANHEQRVILRGKALENLEMEIVGLLKSRRGSPISIASLPM 300
           GYCK+GS CR+ HG +    A       +   A+E    + +   KS+R   ++ A+ P 
Sbjct: 241 GYCKNGSACRFVHGGLPDDAAGK-----MDPSAVEQQCQDFLIRSKSQR---LAAAAFP- 300

Query: 301 VYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSLILVE----- 347
                        G L         C S                          E     
Sbjct: 301 ---------YSPTGSLPGSPSAATKCLSXXXXXXXXXXXXXXXXXXXXXXXXXXEAHKFM 360

[Close]
BLAST of Carg16100 vs. TrEMBL
Match: tr|A0A2R6QT98|A0A2R6QT98_ACTCH (Zinc finger CCCH domain-containing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14927 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 3.0e-94
Identity = 223/545 (40.92%), Postives = 319/545 (58.53%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIILNTD-DRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+LPE T +++ RI +++ E A  I+ Y ++    DRDMIRLAF PD VL S I  AK+D
Sbjct: 18  MDLPESTKVVYNRIQKLEPENAYKILGYFLIQEHADRDMIRLAFSPDNVLHSLINKAKTD 77

Query: 61  LGITE--MVSSALSPVS----ISDPYFPLSVYRR-----DPSSRLFPSESY--SDLDIQN 120
           LG++    VS+++SP      +S P+   +  R      DP   +  +  Y  +D  ++N
Sbjct: 78  LGLSSPPAVSASISPPQANPFLSRPFSSPASLRATNPYWDPQVTVGNNLEYVSNDYGLEN 137

Query: 121 PMQCLSLEDQFDSVNPVGLRG------------------------FPFKICHYFSKGYCK 180
            +Q LSLEDQ ++VN VGL G                        FPFK+CHYF KG+CK
Sbjct: 138 QLQFLSLEDQIETVNSVGLDGISNYYYPEPALGLRTSRRSPSLPEFPFKVCHYFVKGFCK 197

Query: 181 HGSKCRYFHGQV-----------KAANANHEQRVILRGKALENLEMEIVGLLKSRRGSPI 240
           HG+ C+YFHG+             ++N    +   L   +LE LE+EI  LLKSRRG P+
Sbjct: 198 HGNDCKYFHGRPMPESSFSQMSNPSSNKIRSEDHALSPGSLEKLEVEITELLKSRRGYPV 257

Query: 241 SIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSLTRLLSSLNSICVLDRPHGQHSLIL 300
           SIASLPM+YY+ YG++LQA+GYLTE +  G+A +SLT+LL+ L SI ++DRPHGQHS+IL
Sbjct: 258 SIASLPMLYYEKYGRSLQAEGYLTESQRHGKAGYSLTKLLARLKSIRLVDRPHGQHSVIL 317

Query: 301 VEDIGKYIDSSENI---------ARQIYITFPAASTFTEQDVSSYFDKYGPVQDVKIPYQ 360
            ED  KY++ +            +RQIY+TFPA STFTEQDVS+YF+K+GPVQDV+IP Q
Sbjct: 318 AEDFPKYMEFNGERSDHGGIVAGSRQIYLTFPAESTFTEQDVSNYFNKFGPVQDVRIPCQ 377

Query: 361 QTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLVKPYKEKSRLIQRNNAE--------- 420
           Q RM+GFVTF +AET + +L+    HFVCGA+VLVKPY+EKSRL+ R + E         
Sbjct: 378 QKRMFGFVTFAFAETVKQILTKGNPHFVCGARVLVKPYREKSRLVDRKHMEKIHHSMYYG 437

Query: 421 NNSEGNMEEANSMPRATNDS--LTRILIDENELQRQRSELFLSLVN-------------- 451
           ++      E +SMPR  ++S  L + L++E++ + +   +  S +N              
Sbjct: 438 SHFADPESELHSMPRVCDNSRLLNKHLVEEHDQELELGRMRFSDLNVAPKDMNHHHYFGY 497

[Close]
BLAST of Carg16100 vs. TrEMBL
Match: tr|A0A067ETH9|A0A067ETH9_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.6e-92
Identity = 237/568 (41.73%), Postives = 326/568 (57.39%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +++ E  + II Y++L +  +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYFPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYS-----DLDIQNPMQCLSLEDQFDSVNPV-------------------- 180
            +S  F    YS     D  +QN MQ L+LEDQFDSVN V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 -----GLRGFPFKICHYFSKGYCKHGSKCRYFHG--------QVKAANAN---HEQRVIL 240
                 L  FP K+CHYF+KG+CKHG+ CRYFHG        Q+ + NAN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLPM+YY+ YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAE----------NNSEGNMEEANSMPRATNDS--LTRILIDEN--- 451
           KPY+EKSRL+ R   E          + ++G+  E ++MPRA N+S  L + L++E+   
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGD-TELHTMPRACNNSRLLRKQLMEEHEQA 480

[Close]
BLAST of Carg16100 vs. TrEMBL
Match: tr|A0A067EWZ3|A0A067EWZ3_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.8e-92
Identity = 237/571 (41.51%), Postives = 329/571 (57.62%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +++ E  + II Y++L +  +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYFPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYS-----DLDIQNPMQCLSLEDQFDSVNPV-------------------- 180
            +S  F    YS     D  +QN MQ L+LEDQFDSVN V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 -----GLRGFPFKICHYFSKGYCKHGSKCRYFHG--------QVKAANAN---HEQRVIL 240
                 L  FP K+CHYF+KG+CKHG+ CRYFHG        Q+ + NAN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLPM+YY+ YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAE----------NNSEGNMEEANSMPRATNDS--LTRILIDEN--- 451
           KPY+EKSRL+ R   E          + ++G+  E ++MPRA N+S  L + L++E+   
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGD-TELHTMPRACNNSRLLRKQLMEEHEQA 480

[Close]
BLAST of Carg16100 vs. TrEMBL
Match: tr|A0A067ETA5|A0A067ETA5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.9e-91
Identity = 237/571 (41.51%), Postives = 328/571 (57.44%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +++ E  + II Y++L +  +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYFPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYS-----DLDIQNPMQCLSLEDQFDSVNPV-------------------- 180
            +S  F    YS     D  +QN MQ L+LEDQFDSVN V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 -----GLRGFPFKICHYFSKGYCKHGSKCRYFHG--------QVKAANAN---HEQRVIL 240
                 L  FP K+CHYF+KG+CKHG+ CRYFHG        Q+ + NAN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLPM+YY+ YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDRPHGQHSLILVEDIGKYIDSSENI---------ARQIYITFPAAS 360
           T+LL+ L NSI ++DRPHGQHS+IL ED+ KY++ S            +RQIY+TFPA S
Sbjct: 301 TKLLARLKNSIRLIDRPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFPAES 360

Query: 361 TFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQVLV 420
           TFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+VLV
Sbjct: 361 TFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGARVLV 420

Query: 421 KPYKEKSRLIQRNNAE----------NNSEGNMEEANSMPRATNDS--LTRILIDEN--- 451
           KPY+EKSRL+ R   E          + ++G+  E ++MPRA N+S  L + L++E+   
Sbjct: 421 KPYREKSRLVDRKYVEKMQHPMFCSLHFTDGD-TELHTMPRACNNSRLLRKQLMEEHEQA 480

[Close]
BLAST of Carg16100 vs. TrEMBL
Match: tr|A0A067F5D1|A0A067F5D1_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.2e-90
Identity = 237/574 (41.29%), Postives = 329/574 (57.32%), Query Frame = 0 

Query: 1   MELPEPTNLLFQRICEMDAECATTIIEYIIL-NTDDRDMIRLAFCPDTVLQSFIEDAKSD 60
           M+  E T  ++ RI +++ E  + II Y++L +  +RDMIRLAF PD ++ S I +AK  
Sbjct: 1   MDFTESTKAVYNRIQKLEPENVSKIIGYLLLQDHGERDMIRLAFSPDHLIYSLINEAKMK 60

Query: 61  LGITE-MVSSALSPVSISD------PYFPLSV------------------------YRRD 120
           LG+ +  VS  +SP S++D      P+ P S                          ++ 
Sbjct: 61  LGLGKPTVSPPISPASVADLPLQFAPFSPASTRPVSSPASMRAAASPFWDPQMAADQQQQ 120

Query: 121 PSSRLFPSESYS-----DLDIQNPMQCLSLEDQFDSVNPV-------------------- 180
            +S  F    YS     D  +QN MQ L+LEDQFDSVN V                    
Sbjct: 121 VNSIEFVQPGYSDTAAEDFCLQNQMQFLTLEDQFDSVNSVNSDFSSSYFYPEPALGHVRT 180

Query: 181 -----GLRGFPFKICHYFSKGYCKHGSKCRYFHG--------QVKAANAN---HEQRVIL 240
                 L  FP K+CHYF+KG+CKHG+ CRYFHG        Q+ + NAN   +E  V  
Sbjct: 181 SRRSPSLPEFPVKVCHYFNKGFCKHGNNCRYFHGHPMPESFSQIFSPNANDIRNEDHVFS 240

Query: 241 RGKALENLEMEIVGLLKSRRGSPISIASLPMVYYDFYGKNLQADGYLTEGRGFGRACFSL 300
            G +LE LE EI  LLK RRG PISIASLPM+YY+ YGK LQA+GYLTE +  G+A +SL
Sbjct: 241 PG-SLERLEAEITELLKQRRGFPISIASLPMMYYEKYGKTLQAEGYLTESQRHGKAGYSL 300

Query: 301 TRLLSSL-NSICVLDR---PHGQHSLILVEDIGKYIDSSENI---------ARQIYITFP 360
           T+LL+ L NSI ++DR   PHGQHS+IL ED+ KY++ S            +RQIY+TFP
Sbjct: 301 TKLLARLKNSIRLIDRCNLPHGQHSVILAEDVPKYLEYSGEKSDPGGIVAGSRQIYLTFP 360

Query: 361 AASTFTEQDVSSYFDKYGPVQDVKIPYQQTRMYGFVTFVYAETARHVLSIRTTHFVCGAQ 420
           A STFTEQDVS+YF K+GPVQDV+IP QQ RM+GFVTFV+AET + +L+    HFVCGA+
Sbjct: 361 AESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVKQILAKGNPHFVCGAR 420

Query: 421 VLVKPYKEKSRLIQRNNAE----------NNSEGNMEEANSMPRATNDS--LTRILIDEN 451
           VLVKPY+EKSRL+ R   E          + ++G+  E ++MPRA N+S  L + L++E+
Sbjct: 421 VLVKPYREKSRLVDRKYVEKMQHPMFCSLHFTDGD-TELHTMPRACNNSRLLRKQLMEEH 480

The following BLAST results are available for this feature:
BLAST of Carg16100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022943887.13.9e-25598.90zinc finger CCCH domain-containing protein 18-like isoform X1 [Cucurbita moschat... [more]
XP_022943888.11.2e-25198.24zinc finger CCCH domain-containing protein 18-like isoform X2 [Cucurbita moschat... [more]
XP_023512131.12.9e-25096.94zinc finger CCCH domain-containing protein 18-like isoform X1 [Cucurbita pepo su... [more]
XP_023512132.11.7e-24796.48zinc finger CCCH domain-containing protein 18-like isoform X2 [Cucurbita pepo su... [more]
XP_022985797.19.6e-24695.62zinc finger CCCH domain-containing protein 18-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg16100 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G05160.14.5e-8044.30CCCH-type zinc fingerfamily protein with RNA-binding domain[more]
AT3G52980.16.1e-6943.51Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT3G51950.11.3e-3428.46Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing ... [more]
AT1G51520.23.2e-3328.35RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G21100.21.9e-3028.97RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Carg16100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SJ41|C3H18_ARATH8.1e-7944.30Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q6ZK57|C3H54_ORYSJ3.7e-6352.65Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica OX... [more]
sp|Q84ZT0|C3H51_ORYSJ2.8e-4746.72Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. ja... [more]
sp|Q9SV09|C3H46_ARATH2.3e-3328.46Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q0D3J9|C3H53_ORYSJ2.6e-2926.42Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica OX... [more]
BLAST of Carg16100 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2R6QT98|A0A2R6QT98_ACTCH3.0e-9440.92Zinc finger CCCH domain-containing protein OS=Actinidia chinensis var. chinensis... [more]
tr|A0A067ETH9|A0A067ETH9_CITSI1.6e-9241.73Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1[more]
tr|A0A067EWZ3|A0A067EWZ3_CITSI2.8e-9241.51Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1[more]
tr|A0A067ETA5|A0A067ETA5_CITSI8.9e-9141.51Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1[more]
tr|A0A067F5D1|A0A067F5D1_CITSI1.2e-9041.29Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g007997mg PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
IPR012677Nucleotide-bd_a/b_plait_sf
IPR025605OST-HTH/LOTUS_dom
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16100-RACarg16100-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 268..338
e-value: 5.7E-8
score: 42.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 278..322
e-value: 5.0E-7
score: 29.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 267..354
score: 11.077
IPR025605OST-HTH/LOTUS domainPFAMPF12872OST-HTHcoord: 172..248
e-value: 1.1E-7
score: 31.6
IPR025605OST-HTH/LOTUS domainPROSITEPS51644HTH_OSTcoord: 171..254
score: 10.27
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 267..345
e-value: 1.8E-10
score: 42.8
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 127..195
e-value: 9.1E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..434
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 402..454
NoneNo IPR availablePANTHERPTHR24009FAMILY NOT NAMEDcoord: 125..451
coord: 1..102
NoneNo IPR availablePANTHERPTHR24009:SF0ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 18coord: 125..451
coord: 1..102
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 127..154
score: 14.605
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 130..152
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 278..355

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16100Cla004489Watermelon (97103) v1carwmB0331
Carg16100ClCG10G004560Watermelon (Charleston Gray)carwcgB0334
Carg16100Cucsa.042290Cucumber (Gy14) v1carcgyB0404
Carg16100CmaCh02G002260Cucurbita maxima (Rimu)carcmaB0487
Carg16100CmaCh20G006780Cucurbita maxima (Rimu)carcmaB0486
Carg16100CmoCh20G006770Cucurbita moschata (Rifu)carcmoB0473
Carg16100CmoCh02G002310Cucurbita moschata (Rifu)carcmoB0474
Carg16100Lsi10G000520Bottle gourd (USVL1VR-Ls)carlsiB315
Carg16100Cp4.1LG16g03870Cucurbita pepo (Zucchini)carcpeB0485
Carg16100Cla97C10G189000Watermelon (97103) v2carwmbB0357
Carg16100Bhi11G000389Wax gourdcarwgoB0428
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16100Carg05151Silver-seed gourdcarcarB372
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16100Watermelon (Charleston Gray)carwcgB0336
Carg16100Watermelon (Charleston Gray)carwcgB0340
Carg16100Watermelon (97103) v1carwmB0334
Carg16100Watermelon (97103) v1carwmB0339
Carg16100Watermelon (97103) v2carwmbB0358
Carg16100Watermelon (97103) v2carwmbB0363
Carg16100Wax gourdcarwgoB0429
Carg16100Wax gourdcarwgoB0433
Carg16100Silver-seed gourdcarcarB232
Carg16100Silver-seed gourdcarcarB378
Carg16100Cucumber (Gy14) v2carcgybB0357
Carg16100Cucumber (Gy14) v2carcgybB0361
Carg16100Cucumber (Gy14) v1carcgyB0405
Carg16100Cucumber (Gy14) v1carcgyB0408
Carg16100Cucurbita maxima (Rimu)carcmaB0483
Carg16100Cucurbita maxima (Rimu)carcmaB0484
Carg16100Cucurbita moschata (Rifu)carcmoB0470
Carg16100Cucurbita moschata (Rifu)carcmoB0471
Carg16100Cucurbita pepo (Zucchini)carcpeB0484
Carg16100Cucurbita pepo (Zucchini)carcpeB0487
Carg16100Cucurbita pepo (Zucchini)carcpeB0489
Carg16100Wild cucumber (PI 183967)carcpiB0381
Carg16100Wild cucumber (PI 183967)carcpiB0387
Carg16100Cucumber (Chinese Long) v2carcuB0378
Carg16100Cucumber (Chinese Long) v2carcuB0384
Carg16100Cucumber (Chinese Long) v3carcucB0382
Carg16100Cucumber (Chinese Long) v3carcucB0386
Carg16100Bottle gourd (USVL1VR-Ls)carlsiB316
Carg16100Melon (DHL92) v3.5.1carmeB0350
Carg16100Melon (DHL92) v3.6.1carmedB0356