CmaCh20G003860 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G003860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr20 : 1859291 .. 1859907 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCTCCTTCCGAGTTCCGGCCTTCTTCTTTCCCTATGAGACAGTGTTCCCTTTCCGCTCACATTTTCTCTGATTTTCCCGCCTTCCAAACACATACTTCGATACGAACAATCTATCAATCGATCTTATCACCGTCCTTGCTGACTTCAAGATTCGAGTAAGCTACGCTAATACCTCTCGATTTGGTTGGCTGATTACTGACATGTCTGATCCTGTTTGTGGTGGAATCGAAGAACAAGAGAATCTGCATCTGTAAATTTGTTATGGAGAAGAAGAGAGAGTGCCGATTTGGTGATGGTAATGGTTGTATAAATGGCGATGAAAGAGTTTTTCAGTGGGAGGATGGCCTCCCCGACGCAGAAAAATTAACGCCTCTTTCTCAATCGCTGGTATTGCAGGAACTGGCTTCGGCGTTCAGGATTTTGATGGAACCTCATCGGAGTATATCTGATGTTAAGTCGGCGTCGAAGACGACGATATTGAATATTTGCGACGGACAATCGGAAGGATACAGATGTTTCGGGCTTAATTACGATCAGACGCGGGGGGAAGACGCCGCGATGATTGAATCGGACGAGGTGATAAATCTAGATGAGTTGGGATCCGATTCGCGGTAA

mRNA sequence

CGCCTCCTTCCGAGTTCCGGCCTTCTTCTTTCCCTATGAGACAGTGTTCCCTTTCCGCTCACATTTTCTCTGATTTTCCCGCCTTCCAAACACATACTTCGATACGAACAATCTATCAATCGATCTTATCACCGTCCTTGCTGACTTCAAGATTCGAGTAAGCTACGCTAATACCTCTCGATTTGGTTGGCTGATTACTGACATGTCTGATCCTGTTTGTGGTGGAATCGAAGAACAAGAGAATCTGCATCTGTAAATTTGTTATGGAGAAGAAGAGAGAGTGCCGATTTGGTGATGGAACTGGCTTCGGCGTTCAGGATTTTGATGGAACCTCATCGGAGTATATCTGATGTTAAGTCGGCGTCGAAGACGACGATATTGAATATTTGCGACGGACAATCGGAAGGATACAGATGTTTCGGGCTTAATTACGATCAGACGCGGGGGGAAGACGCCGCGATGATTGAATCGGACGAGGTGATAAATCTAGATGAGTTGGGATCCGATTCGCGGTAA

Coding sequence (CDS)

ATGGAACTGGCTTCGGCGTTCAGGATTTTGATGGAACCTCATCGGAGTATATCTGATGTTAAGTCGGCGTCGAAGACGACGATATTGAATATTTGCGACGGACAATCGGAAGGATACAGATGTTTCGGGCTTAATTACGATCAGACGCGGGGGGAAGACGCCGCGATGATTGAATCGGACGAGGTGATAAATCTAGATGAGTTGGGATCCGATTCGCGGTAA

Protein sequence

MELASAFRILMEPHRSISDVKSASKTTILNICDGQSEGYRCFGLNYDQTRGEDAAMIESDEVINLDELGSDSR
Homology
[Close]
BLAST of CmaCh20G003860 vs. TrEMBL
Match: A0A0A0KH89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G190220 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-21
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 2   ELASAFRILMEPHRSISDVKSASKTTILNICDGQSEGYRCFGLNYDQTRGEDAAMIESDE 61
           ELASAFRILMEPHRSI DV SASK TILNI DGQSEGYR F   YDQTR ED  M+ESDE
Sbjct: 47  ELASAFRILMEPHRSILDVNSASKMTILNIRDGQSEGYRSFEFKYDQTRREDVVMVESDE 106

Query: 62  VINLDELGSDSR 74
            IN D+LGSDSR
Sbjct: 107 GINPDDLGSDSR 118

[Close]
BLAST of CmaCh20G003860 vs. NCBI nr
Match: gi|449450912|ref|XP_004143206.1| (PREDICTED: transcription factor PCL1-like [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-21
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 2   ELASAFRILMEPHRSISDVKSASKTTILNICDGQSEGYRCFGLNYDQTRGEDAAMIESDE 61
           ELASAFRILMEPHRSI DV SASK TILNI DGQSEGYR F   YDQTR ED  M+ESDE
Sbjct: 47  ELASAFRILMEPHRSILDVNSASKMTILNIRDGQSEGYRSFEFKYDQTRREDVVMVESDE 106

Query: 62  VINLDELGSDSR 74
            IN D+LGSDSR
Sbjct: 107 GINPDDLGSDSR 118

[Close]
BLAST of CmaCh20G003860 vs. NCBI nr
Match: gi|659128209|ref|XP_008464103.1| (PREDICTED: transcription factor PCL1 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 2.7e-21
Identity = 56/72 (77.78%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 2   ELASAFRILMEPHRSISDVKSASKTTILNICDGQSEGYRCFGLNYDQTRGEDAAMIESDE 61
           ELASAFRILMEPHRSI DV SASK TI+NI DGQSEGYR F   YDQTR ED  M+ESDE
Sbjct: 47  ELASAFRILMEPHRSILDVNSASKMTIMNIRDGQSEGYRSFEFKYDQTRREDVVMVESDE 106

Query: 62  VINLDELGSDSR 74
            IN D+LGSDSR
Sbjct: 107 GINPDDLGSDSR 118

The following BLAST results are available for this feature:
BLAST of CmaCh20G003860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G003860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH89_CUCSA1.1e-2179.17Uncharacterized protein OS=Cucumis sativus GN=Csa_6G190220 PE=4 SV=1[more]
BLAST of CmaCh20G003860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh20G003860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450912|ref|XP_004143206.1|1.6e-2179.17PREDICTED: transcription factor PCL1-like [Cucumis sativus][more]
gi|659128209|ref|XP_008464103.1|2.7e-2177.78PREDICTED: transcription factor PCL1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G003860.1CmaCh20G003860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G003860CmoCh02G007860Cucurbita moschata (Rifu)cmacmoB553
CmaCh20G003860MELO3C025894.2Melon (DHL92) v3.6.1cmamedB578
CmaCh20G003860CsaV3_6G016650Cucumber (Chinese Long) v3cmacucB0665
CmaCh20G003860CsaV3_7G009940Cucumber (Chinese Long) v3cmacucB0690
CmaCh20G003860Carg26584Silver-seed gourdcarcmaB1256
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G003860CmaCh02G007860Cucurbita maxima (Rimu)cmacmaB468
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G003860Cucurbita maxima (Rimu)cmacmaB486
CmaCh20G003860Cucurbita maxima (Rimu)cmacmaB487
CmaCh20G003860Cucurbita maxima (Rimu)cmacmaB490
CmaCh20G003860Cucumber (Gy14) v1cgycmaB0388
CmaCh20G003860Cucumber (Gy14) v1cgycmaB0468
CmaCh20G003860Cucurbita moschata (Rifu)cmacmoB550
CmaCh20G003860Cucurbita moschata (Rifu)cmacmoB568
CmaCh20G003860Wild cucumber (PI 183967)cmacpiB557
CmaCh20G003860Wild cucumber (PI 183967)cmacpiB559
CmaCh20G003860Cucumber (Chinese Long) v2cmacuB552
CmaCh20G003860Cucumber (Chinese Long) v2cmacuB553
CmaCh20G003860Melon (DHL92) v3.5.1cmameB488
CmaCh20G003860Melon (DHL92) v3.5.1cmameB500
CmaCh20G003860Watermelon (Charleston Gray)cmawcgB481
CmaCh20G003860Watermelon (Charleston Gray)cmawcgB508
CmaCh20G003860Watermelon (97103) v1cmawmB518
CmaCh20G003860Watermelon (97103) v1cmawmB524
CmaCh20G003860Cucurbita pepo (Zucchini)cmacpeB564
CmaCh20G003860Cucurbita pepo (Zucchini)cmacpeB571
CmaCh20G003860Cucurbita pepo (Zucchini)cmacpeB584
CmaCh20G003860Cucurbita pepo (Zucchini)cmacpeB593
CmaCh20G003860Bottle gourd (USVL1VR-Ls)cmalsiB506
CmaCh20G003860Bottle gourd (USVL1VR-Ls)cmalsiB526
CmaCh20G003860Cucumber (Gy14) v2cgybcmaB634
CmaCh20G003860Cucumber (Gy14) v2cgybcmaB789
CmaCh20G003860Melon (DHL92) v3.6.1cmamedB566
CmaCh20G003860Silver-seed gourdcarcmaB0207
CmaCh20G003860Silver-seed gourdcarcmaB0473
CmaCh20G003860Silver-seed gourdcarcmaB1383
CmaCh20G003860Cucumber (Chinese Long) v3cmacucB0663
CmaCh20G003860Watermelon (97103) v2cmawmbB568
CmaCh20G003860Watermelon (97103) v2cmawmbB595
CmaCh20G003860Wax gourdcmawgoB0692