CmaCh20G003510 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G003510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA binding protein
Location	Cma_Chr20 : 1722059 .. 1725637 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTTCCTAACCGGCGGATACGGAGAATAGCCTGCGCGCGCTTCGCCCTAGTTCGACTTCGATCCCCTTTCGGGAAGAAAACCCTTCGGCGCTCGTCTCTCTGCCCAAGGGAAACTAGAGAGGATCTTGATTTTGATTTTGATTTCGGTTTCGAAGTGGGCTATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAGGAGGCCTCGCTTGGGATTTCTGAGGAAGCCTCATGGCACGCCAAATACAAGGATTCCGCCTACGTTTTCGTTGGAGGCATTCCTTACGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTAAGTTCATAAGTTTATCTGTTTTCTCCTCATCAGCGTTCTCATTGTGTTCTTCTGTGGCTCTCTGTTCTGATTGGGTAGTTTACTAAGTGGAACATTGAGCTTCTATGCTGGATCTGCGTGTTCGACAATGAAATGATTTATTCTCTCCCTTAGGTGTGGTCTCGTAGTTCGAGTAGCTTCTGAAATGAAATTTCCGAGGTTTTGCATAACTAGAGGATTTTTGTTAGAGAGGGAGTTGATGTTTCAAGTTGTGTAGCTTATGTGTGACCGAATACACTAATTGAGCTCGTTCTTGCTAGTCCATTAGGTTTTGTTGTTCCTTGCTTGAGAAAAAGTTTCTCCCTCCCTCGCCTCCCATCTCTCTGAAGGATCAGGCAAGTTTTTTTTAGCTACTTTGCTGAATTCATCTTCCTTGTGATCTCGAAGGGGCAACCATATGACAAGATGTTTGGAGATACCGTTAGAAAGTGCAAACCTCCTCGATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTTGGTTTTTTTAAAAGGCCTTGTACCAATGGAGATAGTGTTCCATACTTATTAAACCCATGATCTTTCTCTTGATTAGCCAATGTGGGACTACTTCGTTCAATATTTTACAACAATCTTCCCCTTAGACAAAGTACACCATAGAGTCTCTTTTGAGGCCTATAGAGCCCTTGAACAGCCTCCCCTTAATCGAGGTTCGACCCCTTTCTCTAGAGCCCTCGAACAAAGTACACCCTTTGTTCGACACTTGAATCACTTTTGACTACACCTTTGAGGCTCACAACTTCTTTGCTTGACACTTGAGGATTCTATTGACATGGCTAAGTTAAGGGTATGACTCTGATACCATGTTAGAAATCACGAACCTCCACAATGGTATGATATTGTTCACTTGAAGCATAAGCTCTCATGACTTTTCCTTGGGTTTTTCCAAAAGGTCTCATGCCAATGGAGATAGTGTTCGTTACTTATAAACCTATGATCTTCCTCTTAATTAACCCATGTCTCAATCAGAAGCTTAGTTGCACAAAACCATTCTCTTCTCCCGGAGCTAGCCTTGTAGTGCGTAAAGCCTCTCGAAGATTAGTGGGGTAGGTTGCAAGCATAATACAAGAAGGGCTCTTCGGTATCTTGGTAGTTGGTATATATGTGTGCGTGTGTGTATAATTACATTCCTTCCAATCAATAAAAGAAACATCTTCATCTTCCTTGCCCTTTCAATGTTTAGCTGCCTGTAAATGCATTTTTAACGTAGCATATTAGCTGTGGATTATTTTTTTTTCATCTGAATATTGAAATGTACTTGGACGAACAGGTATGGAGAGATTGTTGATGTTAATCTTGTCAGAGACAAGGGTACAGGAAAGTCGAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAATCCTTGCTGTAGGTTGTCTTCGGATCCTTGCTCTAGATAGTTCATCGTTATATGGGAATGAATGCAGATTTCTAATTAATGGTGTTTGTCCCTTTCAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAACCGAACAAAAGAAGAGGGAAGCTCGCGGTGTTTGTCGTGCATTCCAAAGGGGTGAATGTACCCGTGGAGCTGGGTGCAAATTCTCTCATGATGAACAGGTACGTGTGAGACTTCCTATTGTGTAAACTTACTCTAGAAAGTGTAAAAGAGGATTTAATGCCTGACAGTTGGTTAGTGGGGAGGAGGGATGGTGCCATGTATAGAAATGGAATTGGTTTTGTAGGGGAAGTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAATAATTCCTTATAAGGGTGTGGAAACTTCTCCCTAGCAGATGCGTTTTAAAACCGTGTGGCTGACGACGATACGTAATAGACTAAAACGGACAATATCTACTAACGGTAGGCTTCGGCTGTTATAGGAAGTCAGTTAGTTTCACGGGATTTTAATTTACCTTTAATGTTACTAGCTGGCTGTCCCTGAGTGAAAGAACTTTTGACATACTATTTTCTTTACCATGCTTGGCTTAGAGTTTTAGCTTCACTTTAGAAATTTAATGCATCAAGTTTTTTATTATTCAGAGAGCTGCGAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGACATGACAAGTTCGATGATAAAAAAGATCGTGATAGAGAATTGCGTGCGAAAGGAAGGAAAAATAGCGACGACTTTGAAAGGAATCCTAGGGAAATAAGTGGGAGGGCGAGGCAGGAAAGTAAACTGAAAGGCTGGGATGATGGTAAAGAATCCGAGCTCAAGTCGAGAGAGAATCATGGCAGGAAAGATGAGAAGAGATTGAGCAGACACGATCCTGATAACAATCGTGAACTGAAGTCGGGAGATGATCATTATAAGAGGGAAGAGAAGAGATCTAGAAGGAACCATGATGATAGTGAGAAAGAAGAGAAGAGATTGAGAAGACATGGTGATGATGATGATAAGACGAAGTTAGAAGATGAACACCATAAGGAAGAAAGGAGATCGAGAAGGAACCAAGACGACGAACTCCCACCGCATTCGAGAAGAGACTACAATACAAGGGAAGAAGATAAGTCAAAAAGGCACGGTGACGAAGAGTTTCAGAAAAAGCCGAGGGAAGACGAAGATGATAGAAGGGAAAGAGATAAATCGACAAGACATCGCTCAGAATCACATAGGCGGGAAAATCCAGATGAGAAGAGGGATTCTCGATCCTCTTATGGTCGGGATCATTCTCATAGAGAAAGAAACGAAGATCGTCATAGATAAGCACCGCAACAAATCGTTACAGTTAGTCCTGTCTTGTTAAACACAAATCGGTTTTCTTCCGATGGGCTGTTCGGTTTCCTTGTATTGTAATAGGAACTCTTTTTTGTTACCTCACTAGCTTGAAACTAAGCTTTATTTGTCTATCAAACGGCTATGATCAGAGAGTGAAGTTCTTTGGGCTGTTGGAATCTTAGCCTTTTGTAACGATTATGCGCATTATTTAAGTATGGGATCACAGATATGGTTGGCTGTAGAATATATGGATAATTTCATTTCAGTTGTAAGAATATTCTTCCAAAGTTATTGATAGCCATTCAGGGTGCCAAATGCAATGTGGATGGCGTCGCATCCTTTTGG

mRNA sequence

AAAGTTCCTAACCGGCGGATACGGAGAATAGCCTGCGCGCGCTTCGCCCTAGTTCGACTTCGATCCCCTTTCGGGAAGAAAACCCTTCGGCGCTCGTCTCTCTGCCCAAGGGAAACTAGAGAGGATCTTGATTTTGATTTTGATTTCGGTTTCGAAGTGGGCTATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAGGAGGCCTCGCTTGGGATTTCTGAGGAAGCCTCATGGCACGCCAAATACAAGGATTCCGCCTACGTTTTCGTTGGAGGCATTCCTTACGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTTGATGTTAATCTTGTCAGAGACAAGGGTACAGGAAAGTCGAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAATCCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAACCGAACAAAAGAAGAGGGAAGCTCGCGGTGTTTGTCGTGCATTCCAAAGGGGTGAATGTACCCGTGGAGCTGGGTGCAAATTCTCTCATGATGAACAGAGAGCTGCGAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGACATGACAAGTTCGATGATAAAAAAGATCGTGATAGAGAATTGCGTGCGAAAGGAAGGAAAAATAGCGACGACTTTGAAAGGAATCCTAGGGAAATAAGTGGGAGGGCGAGGCAGGAAAGTAAACTGAAAGGCTGGGATGATGGTAAAGAATCCGAGCTCAAGTCGAGAGAGAATCATGGCAGGAAAGATGAGAAGAGATTGAGCAGACACGATCCTGATAACAATCGTGAACTGAAGTCGGGAGATGATCATTATAAGAGGGAAGAGAAGAGATCTAGAAGGAACCATGATGATAGTGAGAAAGAAGAGAAGAGATTGAGAAGACATGGTGATGATGATGATAAGACGAAGTTAGAAGATGAACACCATAAGGAAGAAAGGAGATCGAGAAGGAACCAAGACGACGAACTCCCACCGCATTCGAGAAGAGACTACAATACAAGGGAAGAAGATAAGTCAAAAAGGCACGGTGACGAAGAGTTTCAGAAAAAGCCGAGGGAAGACGAAGATGATAGAAGGGAAAGAGATAAATCGACAAGACATCGCTCAGAATCACATAGGCGGGAAAATCCAGATGAGAAGAGGGATTCTCGATCCTCTTATGGTCGGGATCATTCTCATAGAGAAAGAAACGAAGATCGTCATAGATAAGCACCGCAACAAATCGTTACAGTTAGTCCTGTCTTGTTAAACACAAATCGGTTTTCTTCCGATGGGCTGTTCGGTTTCCTTGTATTGTAATAGGAACTCTTTTTTGTTACCTCACTAGCTTGAAACTAAGCTTTATTTGTCTATCAAACGGCTATGATCAGAGAGTGAAGTTCTTTGGGCTGTTGGAATCTTAGCCTTTTGTAACGATTATGCGCATTATTTAAGTATGGGATCACAGATATGGTTGGCTGTAGAATATATGGATAATTTCATTTCAGTTGTAAGAATATTCTTCCAAAGTTATTGATAGCCATTCAGGGTGCCAAATGCAATGTGGATGGCGTCGCATCCTTTTGG

Coding sequence (CDS)

ATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAGGAGGCCTCGCTTGGGATTTCTGAGGAAGCCTCATGGCACGCCAAATACAAGGATTCCGCCTACGTTTTCGTTGGAGGCATTCCTTACGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTTGATGTTAATCTTGTCAGAGACAAGGGTACAGGAAAGTCGAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAATCCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAACCGAACAAAAGAAGAGGGAAGCTCGCGGTGTTTGTCGTGCATTCCAAAGGGGTGAATGTACCCGTGGAGCTGGGTGCAAATTCTCTCATGATGAACAGAGAGCTGCGAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGACATGACAAGTTCGATGATAAAAAAGATCGTGATAGAGAATTGCGTGCGAAAGGAAGGAAAAATAGCGACGACTTTGAAAGGAATCCTAGGGAAATAAGTGGGAGGGCGAGGCAGGAAAGTAAACTGAAAGGCTGGGATGATGGTAAAGAATCCGAGCTCAAGTCGAGAGAGAATCATGGCAGGAAAGATGAGAAGAGATTGAGCAGACACGATCCTGATAACAATCGTGAACTGAAGTCGGGAGATGATCATTATAAGAGGGAAGAGAAGAGATCTAGAAGGAACCATGATGATAGTGAGAAAGAAGAGAAGAGATTGAGAAGACATGGTGATGATGATGATAAGACGAAGTTAGAAGATGAACACCATAAGGAAGAAAGGAGATCGAGAAGGAACCAAGACGACGAACTCCCACCGCATTCGAGAAGAGACTACAATACAAGGGAAGAAGATAAGTCAAAAAGGCACGGTGACGAAGAGTTTCAGAAAAAGCCGAGGGAAGACGAAGATGATAGAAGGGAAAGAGATAAATCGACAAGACATCGCTCAGAATCACATAGGCGGGAAAATCCAGATGAGAAGAGGGATTCTCGATCCTCTTATGGTCGGGATCATTCTCATAGAGAAAGAAACGAAGATCGTCATAGATAA

Protein sequence

MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEKRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHKEERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRHRSESHRRENPDEKRDSRSSYGRDHSHRERNEDRHR

Homology

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BLAST of CmaCh20G003510 vs. Swiss-Prot
Match: C3H25_ORYSJ (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.1e-76
Identity = 177/319 (55.49%), Postives = 219/319 (68.65%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VKR Q IN +EA LGI E+ SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           E+VDVNLVRDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA++LGRI+RVDHV+KYKKKEE
Sbjct: 61  EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEE  QKKREARGVC AFQ+GEC RGA C++SHDEQR ANTGWG+ E++ ++W HD+  
Sbjct: 121 EDEEELQKKREARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180

Query: 181 DKKDRDREL-RAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDE 240
           +     ++   + G +   D  +   + +GR  Q S+ + + D ++S L+   + G KD 
Sbjct: 181 EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKD-RDSRLR-HSDRGSKDH 240

Query: 241 KRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHK 300
            R  RH  D + E   GD   +R   R  +  D+  +  +   +H + D K    D    
Sbjct: 241 DRY-RH--DRSPERSRGD--RQRNNDRYAQGRDEKSERYRSEVKHDEGDQKRSRRDTDSS 300

Query: 301 EERRSRRNQDDELPPHSRR 319
                R N+D E    SRR
Sbjct: 301 GHYERRGNEDSERYRKSRR 312

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BLAST of CmaCh20G003510 vs. Swiss-Prot
Match: C3H42_ARATH (Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.1e-71
Identity = 187/369 (50.68%), Postives = 233/369 (63.14%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA +LGR I+VDH   YKK EE
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEET ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW HDK  
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNR 180

Query: 181 DKK------DRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGK-ESELKSREN 240
           + +       R    R    K S D +R     +G   +E +   WD  K     K   +
Sbjct: 181 EGRGVCRAFQRGECTRGDSCKFSHDEKR--AATTGWGHEEDRSSKWDQDKLNGAKKGGTS 240

Query: 241 HGRKDEKRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKL 300
            G + + +    +  + R    GD  Y R ++R R + +D         R  D  D  + 
Sbjct: 241 FGNRGDFKPDVEE-KSYRGRGDGDASYGRPKERERVDREDMGP------RSRDAYDMKEQ 300

Query: 301 EDEHHKEERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKS 360
           +     +   SRR+ D+    + R D  +R +D  KR  +       R D +DR E+D+ 
Sbjct: 301 KRSGRYDNAYSRRHNDE--IDYVREDKGSRAQDWEKRKAES------RRDRNDREEKDRD 352

Query: 361 TRHRSESHR 363
           +  R +  R
Sbjct: 361 SLRREDRRR 352

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BLAST of CmaCh20G003510 vs. Swiss-Prot
Match: RBMX2_HUMAN (RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 151.4 bits (381), Expect = 2.1e-35
Identity = 129/374 (34.49%), Postives = 185/374 (49.47%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++++ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIV++NLVRDK TGKSKGF F+ YEDQRSTILAVDN NG +I GR IRVDHV+ Y+  ++
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKD 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
            +E  +        V R  Q     +G G +              ++ED      H    
Sbjct: 121 SEEIDD--------VTRQLQE----KGCGARTPSPSLSE------SSEDEKPTKKH---- 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDD-GKESELKSRENHGRKDE 240
            KKD+  + + K  K   D E    + S  + +   +K  DD G +          +K E
Sbjct: 181 -KKDKKEKKKKKKEKEKADREVQAEQPSSSSPRRKTVKEKDDTGPKKHSSKNSERAQKSE 240

Query: 241 KRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHK 300
            R  +  P +      G +  +RE K+ +  H+      +  R     ++KT++ D    
Sbjct: 241 PREGQKLPKSRTAYSGGAEDLERELKKEKPKHEHKSSSRREAR-----EEKTRIRDRGRS 300

Query: 301 EERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRH--- 360
            +  S               YN R E +S R                 R RDKS RH   
Sbjct: 301 SDAHSSW-------------YNGRSEGRSYR--------------SRSRSRDKSHRHKRA 319

Query: 361 -RSESHRRENPDEK 370
            RS      NP ++
Sbjct: 361 RRSRERESSNPSDR 319

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BLAST of CmaCh20G003510 vs. Swiss-Prot
Match: IST3_SCHPO (U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf29 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.8e-32
Identity = 63/117 (53.85%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 7   VKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVN 66
           +++I+++N QE     S  +SWH  Y DSAY+++G + +DL E D+L VF+++GE VD+N
Sbjct: 4   IRQIERLNEQELDKPFS--SSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDIN 63

Query: 67  LVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEEEDE 124
           LVRDK TGKSKGFAF+ YEDQRST+LAVDN+   ++L R++RVDHV  YK  ++E E
Sbjct: 64  LVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASYKVPQKEKE 118

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BLAST of CmaCh20G003510 vs. Swiss-Prot
Match: RBMX2_RAT (RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.7e-32
Identity = 125/367 (34.06%), Postives = 187/367 (50.95%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIV++NLVRDK TGKSKGF F+ YEDQRST+LAVDN NG +I GR IRVDHV  Y +  +
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANY-RAPQ 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           E E+ +   RE +            +G G K         ++    +ED  +K       
Sbjct: 121 ESEDVDDVTRELQ-----------EKGCGAK------TPPSSPPEVSEDEDAKVTKKPKK 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
           DKK+         +K   + E+  R +       S+ K     KE++ +S + H  K  +
Sbjct: 181 DKKE---------KKKKKEKEKTERPVQAELPSCSRSK---TVKETDEQSAKKHSSKPSE 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHKE 300
           R                   K E +  +++H  S       R   ++ +    +++H  E
Sbjct: 241 RAQ-----------------KSECRERKKSHSGSPDGRTSCRGRAEEPEWEAKKEKHKHE 300

Query: 301 ERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRHRSE- 360
            + S R + +E      R  ++     S+ HG  E +          R  D+S RH+   
Sbjct: 301 HKPSSRREGEEKSRDKDRGRSSGTH-SSRHHGHSEGRSHRSRSRSRSRSPDRSHRHKKHR 319

Query: 361 -SHRREN 366
            SH RE+
Sbjct: 361 YSHERES 319

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BLAST of CmaCh20G003510 vs. TrEMBL
Match: A0A0A0KZW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308540 PE=4 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 1.4e-155
Identity = 320/397 (80.60%), Postives = 350/397 (88.16%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDHV+KYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEE EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
            +K+ D+EL AKGRK SD+  R+PRE SG  RQE++ +GWDD KESELKSRE+HG KDEK
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDE-HHK 300
           R  R+D D N + KSGDD YK EEKRS RNHDD+ K+EKR R+H D+DD+ KLED+ + K
Sbjct: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKH-DNDDEMKLEDDRYRK 300

Query: 301 EERRSRRNQDDELPPHSRRDYNTREEDK-SKRHGDEEFQKKPREDEDDRRERDKSTRHRS 360
           EE R RRNQD+ELP HSRRDY TREED+ SKRHGD+E+  K RED D RRERD S RHRS
Sbjct: 301 EENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLRED-DKRRERDVSVRHRS 360

Query: 361 ESHRRENPDEKRDSRSSY-GRD---HSHRERNEDRHR 392
           ES+RRENPDEKRD RSS+ GRD   HSHRERNEDR R
Sbjct: 361 ESYRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of CmaCh20G003510 vs. TrEMBL
Match: A0A061GV88_THECC (RNA recognition motif-containing protein, putative OS=Theobroma cacao GN=TCM_041636 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.0e-97
Identity = 242/404 (59.90%), Postives = 288/404 (71.29%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKR+Q IN++EA LGISEEASWHAKYKDSAYV+VGG+P+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTLVKRLQNINAKEADLGISEEASWHAKYKDSAYVYVGGLPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNLVRDKGTGKS+GFAF+AYEDQRSTILAVDNLNG QILGRIIRVDHV KYKKKEE
Sbjct: 61  EIVDVNLVRDKGTGKSRGFAFLAYEDQRSTILAVDNLNGTQILGRIIRVDHVEKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDE+ EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG  +D SS+WGH+KF+
Sbjct: 121 EDEKEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG-PQDQSSRWGHEKFE 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELK----------- 240
             K        K  K+    ER  +E S  AR   K     DG+E +             
Sbjct: 181 GSK--------KNEKSFGMQERAVQEGSQPARSNEKASEKSDGREGKRSRRYDDRDVGPT 240

Query: 241 SRENHGRKDEKRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDD 300
           SRE++  ++EKR + H+ DN  E  S DD Y+REEKRSRR H+DS+ E     R G    
Sbjct: 241 SREDYDHREEKRSTWHN-DNEFEPNSRDDRYRREEKRSRR-HNDSDFEP----RSG---- 300

Query: 301 KTKLEDEHHKEERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDED-DRR 360
               ED + ++E+RS R+ DDE     R D   R+E +SKRHGD++++  PR + D DRR
Sbjct: 301 ----EDRYRRDEKRSIRHDDDEYGARLREDRYRRDEKRSKRHGDDKYE--PRSNGDHDRR 360

Query: 361 ERDKSTRHRSESHRRENPDEKRDSR-SSYGRDHSHRERNEDRHR 392
           E  K  R+ SESH RE+ D++   + S+Y RD S  +R E   R
Sbjct: 361 EEKKLVRNESESHPREDYDKRGGEKWSAYNRDSSSHQRGEKDDR 379

[Close]

BLAST of CmaCh20G003510 vs. TrEMBL
Match: A0A0B0MVF1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08154 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 3.6e-95
Identity = 230/396 (58.08%), Postives = 282/396 (71.21%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKR+Q IN++EA LGISEEASWHAKYKDSAY+FVGG+PYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRLQNINAKEADLGISEEASWHAKYKDSAYIFVGGLPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKK-E 120
           EIVDVNLVRDKGTGKSKGFAF+AYEDQRSTILAVDNLNGAQILGRIIRVDH  KYKKK E
Sbjct: 61  EIVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAQILGRIIRVDHAEKYKKKEE 120

Query: 121 EEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKF 180
           EEDEE EQKK+EARGVC  FQRGECTRGAGCKFSH+EQRAANTGWG  ++ SS+WG+DK+
Sbjct: 121 EEDEEEEQKKKEARGVCYVFQRGECTRGAGCKFSHNEQRAANTGWGPQDNKSSRWGNDKY 180

Query: 181 DDKKDRDRELRAKGRKNSDDFER---NPREISGRARQESKLKGWDDGKESELKSRENHGR 240
           +  K  D+    +     + F     + + +  R  +E K     DGK++   SRE++  
Sbjct: 181 EGSKKSDKSSGMQEHTVQEGFRSSRGDEKALEKRDGREGKRSRRYDGKDAGPASREDYSG 240

Query: 241 KDEKRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDE 300
            + KRL+RH         + DD YKREEKRSRR H+DS+ E +             +ED 
Sbjct: 241 IEGKRLTRH---------NDDDRYKREEKRSRR-HNDSDLEPR------------SVEDR 300

Query: 301 HHKEERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRH 360
           H ++E RSRR+ DD     +R   + ++E +SKRHG++EF  +P  D D R E+ +  R+
Sbjct: 301 HRRDENRSRRHGDDG-EDRARLKEDRKDESRSKRHGNDEFDPRPNGDHDRRGEK-RILRN 360

Query: 361 RSESHRRENPDEK-RDSRSSYGRD---HSHRERNED 389
            SESH RE  D++  + R+ Y RD   H H ERN++
Sbjct: 361 ESESHPREERDKRGGEKRTGYNRDSSSHRHGERNKN 372

[Close]

BLAST of CmaCh20G003510 vs. TrEMBL
Match: A0A0D2QC83_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G092500 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.4e-94
Identity = 234/393 (59.54%), Postives = 279/393 (70.99%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKR+Q IN++EA LGISEEASWHAKYKDSAY+FVGG+PYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRLQNINAKEADLGISEEASWHAKYKDSAYIFVGGLPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKK-E 120
           EIVDVNLVRDKGTGKSKGFAF+AYEDQRSTILAVDNLNGAQILGRIIRVDH  KYKKK E
Sbjct: 61  EIVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAQILGRIIRVDHAEKYKKKEE 120

Query: 121 EEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKF 180
           EEDEE EQKK+EARGVC AFQRGECTRGAGCKFSH+EQRAANTGWG  ++ SS+WG+DK+
Sbjct: 121 EEDEEEEQKKKEARGVCYAFQRGECTRGAGCKFSHNEQRAANTGWGPQDNKSSRWGNDKY 180

Query: 181 DDKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDE 240
           +  K  D        K+S   E    +  GR   E K     DGK++   SRE+    + 
Sbjct: 181 EGSKKSD--------KSSSMQEHTVEKRDGR---EGKRSRRYDGKDAGPASREDCSGIEG 240

Query: 241 KRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHK 300
           KRL+RH         + DD YKREEKRSR  H+DS+ E +             +ED H +
Sbjct: 241 KRLTRH---------NDDDRYKREEKRSRW-HNDSDLEPR------------SVEDRHRR 300

Query: 301 EERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRHRSE 360
           +E RSRR+ DD     +R   + ++E +SKRHGD+EF  +P  D D R E+ +  R+ SE
Sbjct: 301 DENRSRRHGDDG-EDRARFKEDRKDESRSKRHGDDEFDPRPNGDHDRRGEK-RILRNESE 358

Query: 361 SHRRENPDEK-RDSRSSYGRD---HSHRERNED 389
           SH RE  D++  + R+ Y RD   H H ERN++
Sbjct: 361 SHPREERDKRGGERRTGYNRDSSSHRHGERNKN 358

[Close]

BLAST of CmaCh20G003510 vs. TrEMBL
Match: A0A097P9K2_HEVBR (CCCH-type zinc finger protein OS=Hevea brasiliensis GN=CZF1 PE=2 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.4e-94
Identity = 232/393 (59.03%), Postives = 279/393 (70.99%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQ INS+EA LGISE+ASWHAKYKDSAYVFVGGIP+DLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQNINSKEAELGISEDASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNLVRDK TGKSKGFAF+AYEDQRST LAVDNLNGA++ GRI+RVDHVTKYKKKEE
Sbjct: 61  EIVDVNLVRDKDTGKSKGFAFIAYEDQRSTNLAVDNLNGAEVAGRIVRVDHVTKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEET+Q+KREARGVCRAFQRGECTRGA CKFSHDEQRAANTGWG  ED S +WGHDKFD
Sbjct: 121 EDEETQQQKREARGVCRAFQRGECTRGASCKFSHDEQRAANTGWG-PEDKSPRWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
             K  +     K   N    E  P++     R+E K     D  E E KS+E++ R+D K
Sbjct: 181 APKKSE-----KRSGNERPSESLPKQSD---RREDKSSRRHDENEMERKSKEDYHRRDGK 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHK- 300
           R  RH+ DN  E KS +D+ +R+EKRS              RRHGD++ + K  D++H+ 
Sbjct: 241 RWRRHE-DNEFEPKSSEDYDRRDEKRS--------------RRHGDEEFEPKTRDDYHRS 300

Query: 301 EERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKSTRHRSE 360
           +E+R RR++D +     R +   R+E   +RH + +  +    D DDRRE  +  RH SE
Sbjct: 301 DEKRLRRHEDVQ-----RGEDYKRDERGLRRHNNGDGLEPRSRDNDDRREEKRFKRHESE 360

Query: 361 SHRRENPDEKRDSRSSYGRD-HSHRERNEDRHR 392
           S+ RE+ D++    S++ RD  S R R  D HR
Sbjct: 361 SYLREDQDKRGAKSSAHVRDSSSSRRRERDEHR 364

[Close]

BLAST of CmaCh20G003510 vs. TAIR10
Match: AT3G47120.1 (AT3G47120.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-72
Identity = 187/369 (50.68%), Postives = 233/369 (63.14%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA +LGR I+VDH   YKK EE
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEET ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW HDK  
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNR 180

Query: 181 DKK------DRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGK-ESELKSREN 240
           + +       R    R    K S D +R     +G   +E +   WD  K     K   +
Sbjct: 181 EGRGVCRAFQRGECTRGDSCKFSHDEKR--AATTGWGHEEDRSSKWDQDKLNGAKKGGTS 240

Query: 241 HGRKDEKRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKL 300
            G + + +    +  + R    GD  Y R ++R R + +D         R  D  D  + 
Sbjct: 241 FGNRGDFKPDVEE-KSYRGRGDGDASYGRPKERERVDREDMGP------RSRDAYDMKEQ 300

Query: 301 EDEHHKEERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDEDDRRERDKS 360
           +     +   SRR+ D+    + R D  +R +D  KR  +       R D +DR E+D+ 
Sbjct: 301 KRSGRYDNAYSRRHNDE--IDYVREDKGSRAQDWEKRKAES------RRDRNDREEKDRD 352

Query: 361 TRHRSESHR 363
           +  R +  R
Sbjct: 361 SLRREDRRR 352

[Close]

BLAST of CmaCh20G003510 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-12
Identity = 33/103 (32.04%), Postives = 60/103 (58.25%), Query Frame = 1


Query: 11  QKINSQ-EASLGISEEASWHA-KYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLV 70
           Q  N Q  A + +S  + + A +   S+ +F+GG+ Y + E  L   F +YGE+VD  ++
Sbjct: 13  QTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72

Query: 71  RDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDH 112
            D+ TG+S+GF FV +    +   A+  L+G  + GR+++V++
Sbjct: 73  LDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115

[Close]

BLAST of CmaCh20G003510 vs. TAIR10
Match: AT1G71800.1 (AT1G71800.1 cleavage stimulating factor 64)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-12
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1


Query: 38  VFVGGIPYDLTEGDLLAVFAQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNL 97
           VFVG IPYD TE  L  +  + G +V   LV D+ TGK KG+ F  Y+D+ + + A  NL
Sbjct: 11  VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query: 98  NGAQILGRIIRVDHVTKYKKKEEEDEETEQKKREARG 135
              +I GR +RVD         E D+ T++ + +++G
Sbjct: 71  QSYEINGRQLRVDFA-------ENDKGTDKTRDQSQG 100

[Close]

BLAST of CmaCh20G003510 vs. TAIR10
Match: AT4G39260.1 (AT4G39260.1 cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 68.9 bits (167), Expect = 7.7e-12
Identity = 25/72 (34.72%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 39  FVGGIPYDLTEGDLLAVFAQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLN 98
           FVGG+ +   + DL   F+Q+G+++D  ++ D+ +G+S+GF FV ++D+++   A++ +N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 99  GAQILGRIIRVD 111
           G ++ GR+I V+
Sbjct: 69  GKELDGRVITVN 80

[Close]

BLAST of CmaCh20G003510 vs. TAIR10
Match: AT1G74230.1 (AT1G74230.1 glycine-rich RNA-binding protein 5)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 1


Query: 4   LTLVKRIQKINSQEAS-LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEI 63
           +  + ++ ++ SQ +S +  S       +   S+ +FVGGI Y   E  L   F++YGE+
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 60

Query: 64  VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTK 115
           VD  ++ D+ TG+S+GFAFV +        A+  L+G  + GR IRV++ T+
Sbjct: 61  VDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYATE 111

[Close]

BLAST of CmaCh20G003510 vs. NCBI nr
Match: gi|659069322|ref|XP_008449221.1| (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumis melo])

HSP 1 Score: 562.4 bits (1448), Expect = 6.3e-157
Identity = 320/396 (80.81%), Postives = 347/396 (87.63%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDH +KYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEE +QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
            +K+ ++ELRAKGRKNSD+  R+PRE SG  RQE++LKG DD KESELKSRE+HG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHKE 300
           R  R+D D N + KSGDDHYKREEKRSRRNHDD+ K+EKR R+H DDD+    +D + KE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ERRSRRNQDDELPPHSRRDYNTREEDK-SKRHGDEEFQKKPREDEDDRRERDKSTRHRSE 360
           E R RRNQD+ELP HSRRDYNTREED+ SKRHGD E+  K RED D RRERD S RHRSE
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLRED-DKRRERDISVRHRSE 360

Query: 361 SHRRENPDEKRDSRSSY-GRD---HSHRERNEDRHR 392
           SHRRENPDEKRD  SS  GRD   HSHRERNED HR
Sbjct: 361 SHRRENPDEKRDYWSSQGGRDSSSHSHRERNEDCHR 395

[Close]

BLAST of CmaCh20G003510 vs. NCBI nr
Match: gi|449460375|ref|XP_004147921.1| (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis sativus])

HSP 1 Score: 557.4 bits (1435), Expect = 2.0e-155
Identity = 320/397 (80.60%), Postives = 350/397 (88.16%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDHV+KYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEE EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
            +K+ D+EL AKGRK SD+  R+PRE SG  RQE++ +GWDD KESELKSRE+HG KDEK
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHGGKDEK 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDE-HHK 300
           R  R+D D N + KSGDD YK EEKRS RNHDD+ K+EKR R+H D+DD+ KLED+ + K
Sbjct: 241 RSRRYDLDGNSDPKSGDDQYKGEEKRSSRNHDDNRKDEKRSRKH-DNDDEMKLEDDRYRK 300

Query: 301 EERRSRRNQDDELPPHSRRDYNTREEDK-SKRHGDEEFQKKPREDEDDRRERDKSTRHRS 360
           EE R RRNQD+ELP HSRRDY TREED+ SKRHGD+E+  K RED D RRERD S RHRS
Sbjct: 301 EENRYRRNQDNELPQHSRRDYKTREEDRSSKRHGDKEYPPKLRED-DKRRERDVSVRHRS 360

Query: 361 ESHRRENPDEKRDSRSSY-GRD---HSHRERNEDRHR 392
           ES+RRENPDEKRD RSS+ GRD   HSHRERNEDR R
Sbjct: 361 ESYRRENPDEKRDYRSSHGGRDSSSHSHRERNEDRRR 395

[Close]

BLAST of CmaCh20G003510 vs. NCBI nr
Match: gi|659069324|ref|XP_008449231.1| (PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumis melo])

HSP 1 Score: 557.0 bits (1434), Expect = 2.6e-155
Identity = 316/391 (80.82%), Postives = 343/391 (87.72%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDH +KYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEE +QKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD
Sbjct: 121 EDEEEQQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
            +K+ ++ELRAKGRKNSD+  R+PRE SG  RQE++LKG DD KESELKSRE+HG KDEK
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEKDEK 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDDKTKLEDEHHKE 300
           R  R+D D N + KSGDDHYKREEKRSRRNHDD+ K+EKR R+H DDD+    +D + KE
Sbjct: 241 RSRRYDLDGNPDPKSGDDHYKREEKRSRRNHDDNRKDEKRSRKHDDDDEMKSEDDRYRKE 300

Query: 301 ERRSRRNQDDELPPHSRRDYNTREEDK-SKRHGDEEFQKKPREDEDDRRERDKSTRHRSE 360
           E R RRNQD+ELP HSRRDYNTREED+ SKRHGD E+  K RED D RRERD S RHRSE
Sbjct: 301 ENRYRRNQDNELPQHSRRDYNTREEDRSSKRHGDGEYPPKLRED-DKRRERDISVRHRSE 360

Query: 361 SHRRENPDEKRDSRSSY-GRD---HSHRERN 387
           SHRRENPDEKRD  SS  GRD   HSHRERN
Sbjct: 361 SHRRENPDEKRDYWSSQGGRDSSSHSHRERN 390

[Close]

BLAST of CmaCh20G003510 vs. NCBI nr
Match: gi|659128107|ref|XP_008464049.1| (PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Cucumis melo])

HSP 1 Score: 552.0 bits (1421), Expect = 8.5e-154
Identity = 321/399 (80.45%), Postives = 349/399 (87.47%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRIIRVDHV+KYKKKEE
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDEE EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD
Sbjct: 121 EDEEEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGRKDEK 240
            + + D+ELRAKGRKNSDD  R+PRE SG  RQE++ KGWDD K SELK RE+H R+DEK
Sbjct: 181 SRTNHDKELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWRRDEK 240

Query: 241 RLSRHDPDNNRELKSGDDHYKREEKRSRRNH--DDSEKEEKRLRRHGDDDDKTKLEDE-H 300
           R  R+D D N + K GDD YKREEKRS RNH  DD+ K+EKR R+H D+D++ KLED+ +
Sbjct: 241 RSRRYDLDGNPDPKLGDDRYKREEKRSTRNHEYDDNRKDEKRSRKH-DNDEEMKLEDDRY 300

Query: 301 HKEERRSRRNQDDELPPHSRRDYNTREEDK-SKRHGDEEFQKKPREDEDDRRERDKSTRH 360
            KEE R RRNQD+ELP HSRR+YNTREED+ SKRHGDEE+Q K  ED D RRERD S RH
Sbjct: 301 RKEENRYRRNQDNELPQHSRRNYNTREEDRSSKRHGDEEYQPKXGED-DKRRERDISVRH 360

Query: 361 RSESHRRENPDEKRDSRSSY-GRD---HSHRERNEDRHR 392
           RSESHRRENP+EKRD RSS+ GRD   HSH ERNEDR R
Sbjct: 361 RSESHRRENPNEKRDFRSSHGGRDSSSHSHTERNEDRRR 397

[Close]

BLAST of CmaCh20G003510 vs. NCBI nr
Match: gi|590588092|ref|XP_007016121.1| (RNA recognition motif-containing protein, putative [Theobroma cacao])

HSP 1 Score: 365.2 bits (936), Expect = 1.5e-97
Identity = 242/404 (59.90%), Postives = 288/404 (71.29%), Query Frame = 1


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKR+Q IN++EA LGISEEASWHAKYKDSAYV+VGG+P+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTLVKRLQNINAKEADLGISEEASWHAKYKDSAYVYVGGLPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEE 120
           EIVDVNLVRDKGTGKS+GFAF+AYEDQRSTILAVDNLNG QILGRIIRVDHV KYKKKEE
Sbjct: 61  EIVDVNLVRDKGTGKSRGFAFLAYEDQRSTILAVDNLNGTQILGRIIRVDHVEKYKKKEE 120

Query: 121 EDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           EDE+ EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG  +D SS+WGH+KF+
Sbjct: 121 EDEKEEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG-PQDQSSRWGHEKFE 180

Query: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELK----------- 240
             K        K  K+    ER  +E S  AR   K     DG+E +             
Sbjct: 181 GSK--------KNEKSFGMQERAVQEGSQPARSNEKASEKSDGREGKRSRRYDDRDVGPT 240

Query: 241 SRENHGRKDEKRLSRHDPDNNRELKSGDDHYKREEKRSRRNHDDSEKEEKRLRRHGDDDD 300
           SRE++  ++EKR + H+ DN  E  S DD Y+REEKRSRR H+DS+ E     R G    
Sbjct: 241 SREDYDHREEKRSTWHN-DNEFEPNSRDDRYRREEKRSRR-HNDSDFEP----RSG---- 300

Query: 301 KTKLEDEHHKEERRSRRNQDDELPPHSRRDYNTREEDKSKRHGDEEFQKKPREDED-DRR 360
               ED + ++E+RS R+ DDE     R D   R+E +SKRHGD++++  PR + D DRR
Sbjct: 301 ----EDRYRRDEKRSIRHDDDEYGARLREDRYRRDEKRSKRHGDDKYE--PRSNGDHDRR 360

Query: 361 ERDKSTRHRSESHRRENPDEKRDSR-SSYGRDHSHRERNEDRHR 392
           E  K  R+ SESH RE+ D++   + S+Y RD S  +R E   R
Sbjct: 361 EEKKLVRNESESHPREDYDKRGGEKWSAYNRDSSSHQRGEKDDR 379

The following BLAST results are available for this feature:

BLAST of CmaCh20G003510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
C3H25_ORYSJ	1.1e-76	55.49	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica GN...	[more]
C3H42_ARATH	3.1e-71	50.68	Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana GN=At3g471...	[more]
RBMX2_HUMAN	2.1e-35	34.49	RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2	[more]
IST3_SCHPO	2.8e-32	53.85	U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	[more]
RBMX2_RAT	3.7e-32	34.06	RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2 PE=2 SV=1	[more]

BLAST of CmaCh20G003510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZW7_CUCSA	1.4e-155	80.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308540 PE=4 SV=1	[more]
A0A061GV88_THECC	1.0e-97	59.90	RNA recognition motif-containing protein, putative OS=Theobroma cacao GN=TCM_041...	[more]
A0A0B0MVF1_GOSAR	3.6e-95	58.08	Uncharacterized protein OS=Gossypium arboreum GN=F383_08154 PE=4 SV=1	[more]
A0A0D2QC83_GOSRA	1.4e-94	59.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G092500 PE=4 SV=1	[more]
A0A097P9K2_HEVBR	1.4e-94	59.03	CCCH-type zinc finger protein OS=Hevea brasiliensis GN=CZF1 PE=2 SV=1	[more]

BLAST of CmaCh20G003510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47120.1	1.7e-72	50.68	RNA recognition motif (RRM)-containing protein	[more]
AT5G61030.1	2.0e-12	32.04	glycine-rich RNA-binding protein 3	[more]
AT1G71800.1	7.7e-12	38.14	cleavage stimulating factor 64	[more]
AT4G39260.1	7.7e-12	34.72	cold, circadian rhythm, and RNA binding 1	[more]
AT1G74230.1	1.7e-11	33.04	glycine-rich RNA-binding protein 5	[more]

BLAST of CmaCh20G003510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069322\|ref\|XP_008449221.1\|	6.3e-157	80.81	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X1 [Cucumi...	[more]
gi\|449460375\|ref\|XP_004147921.1\|	2.0e-155	80.60	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis sativus]	[more]
gi\|659069324\|ref\|XP_008449231.1\|	2.6e-155	80.82	PREDICTED: zinc finger CCCH domain-containing protein 25-like isoform X2 [Cucumi...	[more]
gi\|659128107\|ref\|XP_008464049.1\|	8.5e-154	80.45	PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [C...	[more]
gi\|590588092\|ref\|XP_007016121.1\|	1.5e-97	59.90	RNA recognition motif-containing protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR000571	Znf_CCCH
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G003510.1	CmaCh20G003510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..108 score: 1.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 score: 1.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 36..114 score: 19
IPR000571	Zinc finger, CCCH-type	GENE3D	G3DSA:4.10.1000.10		coord: 135..157 score: 7.
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 135..155 score: 7.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 132..156 score: 0
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 130..157 score: 14
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 133..155 score: 3.2
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 33..119 score: 2.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 27..116 score: 9.67
None	No IPR available	unknown	Coil	Coil	coord: 115..135 scor
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 1..139 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G003510	Cla013355	Watermelon (97103) v1	cmawmB524
CmaCh20G003510	MELO3C025859	Melon (DHL92) v3.5.1	cmameB500
CmaCh20G003510	ClCG02G019610	Watermelon (Charleston Gray)	cmawcgB481
CmaCh20G003510	CmoCh20G003770	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G003510	Lsi10G014270	Bottle gourd (USVL1VR-Ls)	cmalsiB506
CmaCh20G003510	MELO3C025859.2	Melon (DHL92) v3.6.1	cmamedB578
CmaCh20G003510	Cla97C02G045620	Watermelon (97103) v2	cmawmbB568
CmaCh20G003510	Bhi10G000627	Wax gourd	cmawgoB0692
CmaCh20G003510	Carg03360	Silver-seed gourd	carcmaB0473

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G003510	Cucurbita moschata (Rifu)	cmacmoB553
CmaCh20G003510	Cucurbita moschata (Rifu)	cmacmoB568
CmaCh20G003510	Wild cucumber (PI 183967)	cmacpiB556
CmaCh20G003510	Wild cucumber (PI 183967)	cmacpiB559
CmaCh20G003510	Cucumber (Chinese Long) v2	cmacuB551
CmaCh20G003510	Cucumber (Chinese Long) v2	cmacuB553
CmaCh20G003510	Watermelon (Charleston Gray)	cmawcgB507
CmaCh20G003510	Watermelon (97103) v1	cmawmB519
CmaCh20G003510	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G003510	Cucurbita pepo (Zucchini)	cmacpeB571
CmaCh20G003510	Cucurbita pepo (Zucchini)	cmacpeB584
CmaCh20G003510	Cucurbita pepo (Zucchini)	cmacpeB593
CmaCh20G003510	Cucumber (Gy14) v2	cgybcmaB789
CmaCh20G003510	Silver-seed gourd	carcmaB0207
CmaCh20G003510	Silver-seed gourd	carcmaB0723
CmaCh20G003510	Silver-seed gourd	carcmaB1383
CmaCh20G003510	Cucumber (Chinese Long) v3	cmacucB0664
CmaCh20G003510	Cucumber (Chinese Long) v3	cmacucB0665
CmaCh20G003510	Watermelon (97103) v2	cmawmbB596
CmaCh20G003510	Wax gourd	cmawgoB0705
CmaCh20G003510	Cucurbita maxima (Rimu)	cmacmaB468
CmaCh20G003510	Cucurbita maxima (Rimu)	cmacmaB488
CmaCh20G003510	Cucurbita maxima (Rimu)	cmacmaB490
CmaCh20G003510	Cucumber (Gy14) v1	cgycmaB0388