Carg03360 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03360
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA-binding motif protein, X-linked 2
Location	Cucurbita_argyrosperma_scaffold_005 : 1414735 .. 1417950 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTAGTTCGACTTCGATCCCCTCTCGGGAAGAAAACCCTTGGCGCTCGTTTCTCTGCCTAAGGGAAACTGGAGAGGATCTTGATTTTGATTTTGATTTTGATTTTGATTTTGGTTTGGAAGTGAGCTATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAGGAGGCTTCGCTTGGGATTTCTGAGGAAGCCTCATGGCACGCTAAATACAAGGATTCCGCCTACGTTTTCGTTGGAGGCATTCCTTACGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTAAGTTCATAATTTTATCTGTTTTCTCCTCATTGTGTTCTTCTGTGGCTCTCTGTTCTGATTGGGTAGTTTACTGAGTGGAACATTGAGCTTCTTTGCTGGATCTGCGTGTTCGACAATGAAATGATTTATTTTCTCCCTTAGGTGTGGTCTCGTAGTTCGAGTAGCTTCTGAAATGAAATTTCTGAGGTTTTGCATAACTGGAGGATTTTTGTTAGAGAGGGAGTTGATGTTTCAAGTTGTGTAGCTTATGTTTGACCAAATACACTAATTGAGCTCGTTCTTGCTAGTCCATTAGGTTTTGTTGTTCCTTGTATCTTCAGCTTGAGAAAAAGTTTCTCCCTCCCTCCCCTCCCATCTCTCTAAAGGATCAGAGAAGTCTTTTTTAGCTACTTTGCAGAATTCATCTTGTGATCTCGAAGGGGCAACCATATGACAAGATGTTTGGAGATATGGTTAGAAACTACAAACCTCCACAATGGTACGATATTGTCCACTTTGAGCATAAGCTCTCATGGGTTTGCTTTTGGTTTTTCTAAAAGGCCTTGTACCAATGGAGATAGTTCCGTACTTATTAAACTCATGTTCTTTCTCTTGATTAGCCAATGTGGGACTACTTCGTTCAATAATTTTCAACAATCCTCCCCTTGGACAACTTATACCATAGAGTCTCTTTTGAGGCATATAGAGCCCTTGAATAGCCTCCCCTTAATCGAGGCTCGACTCCTTTCTCTAGAGCCCTCGAACAAAGTACACCCTTTGTTCGACACTCGAATCACTTTTGACTACACCTTCGAGGCTCACAACTTCTTTGTTTGACACTTGAGGATTCTATTGACATGACTAAATTAAGGGTATGACCATGTTAGAAATCACGAACTTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTTGGTTTTTCCAAAAGGTCTCATGTCAATGGAGATAGTGTTCCTTACTTATAAACCTATGATCTTCCTCTTAATTAGCCAACGTGGGACTACTTTCAATAATCCTCGATAGATACCTCTCGAGGTCCTAGGTCTAAGTCTCAATTAGAAGCTTAGTTGCTCAAAACCATTCTCTTCTCCTGGAGCTAGCCTTGGAGTGAGTAAAGCCTCTCGAAGATTAGTGGGGTAGGTTGCAAGCATAATACAAGAAGGGCTCTTCGGTATCTTGGTAGTTGGTATATATGTGTGCGTGTGTGTATAATTACATTCCTTCCAATCAATAAAAGAAACATCTTCTTCTTCCTTGCCCTTTCAATGTTTAGCTGCCTGTAAATGCATTTTTAACGTAGCATATTAGCTGTGGATTATTTTTGTTTCATCTGAATATTGAAATGTACTTGGACGAACAGGTATGGAGAGATTGTTGATGTTAATCTTGTCAGAGACAAGGGGACAGGAAAGTCGAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAATCCTTGCTGTAGGTTGTCTTCAGCTCCTTGCTCTAGATAGTTCATCGTTATATGGGAATGAATGCAGATTTCTAATTAATGGTGTTTGTCCCTTTCAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAACCGAACAAAAGAAGAGGGAAGCTCGCGGTGTTTGTCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGGTGCAAATTCTCTCATGATGAGCAGGTACGTGTGAGACTTCCTATTGTGTAAACTTACTCTAGAAAGTGTGAAAGAGGAACTAATCCCTGACACTTGGGTAGTGGGGAGGAGCGATGGTGCCATGTATAGAAATGGAATTGGTTTTGCCGGGGAAGTGTGGGATTCCATATCGGTTGGAGAGAAGAACGAAGAATTCCTTATTAGGGTATGGAAACTTCTCTGTTGCAGACGCGTTTTAAAACTGTGAGCCTGACGATGATACATAATGGACTAAAACGGATAATATCTACTAGCGGTGGGCTTGGCTGTTATAGGAAGTCTGTTAGTTTCATGGGATTTTAATTTACCTTTAATGTTACTAGCTGGCTATCCCTGAGTGAAAGAACTTTTGACATACTATTTTCTTTACCATGCTTGGCTTAGAGTTTTAGCTTCACTTAGAAATTTAATGCATCAAGTTTTTTATTATTCAGAGAGCTGCGAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGACATGACAAGTTCGATGATAAAAAAGATCGTGATAGAGAATTGCGTGCGAAAGGAAGGAAAAATAGCGACGACTTAGAAAGGCATCCTAGGGAAATAAGTGGGAGGGCGAGGCAGGAAAGTAAACTGAAAGGCTGGGATGATGGTAAAGAATCCGAGCTCAAGTCGAGAGAGAATCATGGCAGGAAAGATGAGAAGAGAATGAGCAGACACGATCCTGATAGCAATCGTGAACTGAAGTTGGGAGATGATCGTTATAAGAGGGAAGAGAAGAGATCCAGAAGGAACCATGATGATAGTGAGAAAGAAGAGACGAGATTGAGAAGACATGGTGATGACGATGATAAGACGAAGTTAGAAGATGATCACCATAAGAAGGAAGAAAGGAGATCGAGAAGGAACCAAGACGACGAACTCCCGCCACATTCAAGAAGAGATTACAATACGAGGGAAGAAGACAGGTCAAAAAGGCATGGTGACGAAGAGTATCAGCAAAAGCCAAGGGAAGACGGTGATGATAGAAGGGAAAGAGATAAATCGACAAGACATCGCTCAGAATCACATAGGCGGGAAAATCCAGATGAGAAGAGGGATTCTCGATCCTCTCATGGTCGGGATCATTCTCATAGAGAAAGAAACGAAGATCGT

mRNA sequence

CCCTAGTTCGACTTCGATCCCCTCTCGGGAAGAAAACCCTTGGCGCTCGTTTCTCTGCCTAAGGGAAACTGGAGAGGATCTTGATTTTGATTTTGATTTTGATTTTGATTTTGGTTTGGAAGTGAGCTATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAGGAGGCTTCGCTTGGGATTTCTGAGGAAGCCTCATGGCACGCTAAATACAAGGATTCCGCCTACGTTTTCGTTGGAGGCATTCCTTACGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTTGATGTTAATCTTGTCAGAGACAAGGGGACAGGAAAGTCGAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAATCCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAACCGAACAAAAGAAGAGGGAAGCTCGCGGTGTTTGTCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGGTGCAAATTCTCTCATGATGAGCAGAGAGCTGCGAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGACATGACAAGTTCGATGATAAAAAAGATCGTGATAGAGAATTGCGTGCGAAAGGAAGGAAAAATAGCGACGACTTAGAAAGGCATCCTAGGGAAATAAGTGGGAGGGCGAGGCAGGAAAGTAAACTGAAAGGCTGGGATGATGGTAAAGAATCCGAGCTCAAGTCGAGAGAGAATCATGGCAGGAAAGATGAGAAGAGAATGAGCAGACACGATCCTGATAGCAATCGTGAACTGAAGTTGGGAGATGATCGTTATAAGAGGGAAGAGAAGAGATCCAGAAGGAACCATGATGATAGTGAGAAAGAAGAGACGAGATTGAGAAGACATGGTGATGACGATGATAAGACGAAGTTAGAAGATGATCACCATAAGAAGGAAGAAAGGAGATCGAGAAGGAACCAAGACGACGAACTCCCGCCACATTCAAGAAGAGATTACAATACGAGGGAAGAAGACAGGTCAAAAAGGCATGGTGACGAAGAGTATCAGCAAAAGCCAAGGGAAGACGGTGATGATAGAAGGGAAAGAGATAAATCGACAAGACATCGCTCAGAATCACATAGGCGGGAAAATCCAGATGAGAAGAGGGATTCTCGATCCTCTCATGGTCGGGATCATTCTCATAGAGAAAGAAACGAAGATCGT

Coding sequence (CDS)

ATGAATCCTCTAACCCTAGTCAAACGCATCCAGAAAATCAATTCTCAGGAGGCTTCGCTTGGGATTTCTGAGGAAGCCTCATGGCACGCTAAATACAAGGATTCCGCCTACGTTTTCGTTGGAGGCATTCCTTACGATCTCACTGAGGGTGATCTCCTCGCCGTCTTCGCCCAGTATGGAGAGATTGTTGATGTTAATCTTGTCAGAGACAAGGGGACAGGAAAGTCGAAAGGCTTTGCCTTTGTTGCATATGAAGATCAGAGAAGTACAATCCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGATCATGTGACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAAACCGAACAAAAGAAGAGGGAAGCTCGCGGTGTTTGTCGTGCATTTCAAAGGGGTGAATGTACCCGTGGAGCTGGGTGCAAATTCTCTCATGATGAGCAGAGAGCTGCGAACACGGGCTGGGGGGCGGCAGAAGATGCAAGTTCAAAATGGGGACATGACAAGTTCGATGATAAAAAAGATCGTGATAGAGAATTGCGTGCGAAAGGAAGGAAAAATAGCGACGACTTAGAAAGGCATCCTAGGGAAATAAGTGGGAGGGCGAGGCAGGAAAGTAAACTGAAAGGCTGGGATGATGGTAAAGAATCCGAGCTCAAGTCGAGAGAGAATCATGGCAGGAAAGATGAGAAGAGAATGAGCAGACACGATCCTGATAGCAATCGTGAACTGAAGTTGGGAGATGATCGTTATAAGAGGGAAGAGAAGAGATCCAGAAGGAACCATGATGATAGTGAGAAAGAAGAGACGAGATTGAGAAGACATGGTGATGACGATGATAAGACGAAGTTAGAAGATGATCACCATAAGAAGGAAGAAAGGAGATCGAGAAGGAACCAAGACGACGAACTCCCGCCACATTCAAGAAGAGATTACAATACGAGGGAAGAAGACAGGTCAAAAAGGCATGGTGACGAAGAGTATCAGCAAAAGCCAAGGGAAGACGGTGATGATAGAAGGGAAAGAGATAAATCGACAAGACATCGCTCAGAATCACATAGGCGGGAAAATCCAGATGAGAAGAGGGATTCTCGATCCTCTCATGGTCGGGATCATTCTCATAGAGAAAGAAACGAAGATCGT

Protein sequence

MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFDDKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGRKDEKRMSRHDPDSNRELKLGDDRYKREEKRSRRNHDDSEKEETRLRRHGDDDDKTKLEDDHHKKEERRSRRNQDDELPPHSRRDYNTREEDRSKRHGDEEYQQKPREDGDDRRERDKSTRHRSESHRRENPDEKRDSRSSHGRDHSHRERNEDR

Homology

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BLAST of Carg03360 vs. NCBI nr
Match: XP_022944591.1 (zinc finger CCCH domain-containing protein 25 [Cucurbita moschata])

HSP 1 Score: 433.0 bits (1112), Expect = 1.1e-117
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX
Sbjct: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR 237
           DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR
Sbjct: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR 236

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BLAST of Carg03360 vs. NCBI nr
Match: XP_023512686.1 (zinc finger CCCH domain-containing protein 25 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 431.0 bits (1107), Expect = 4.2e-117
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX
Sbjct: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR 237
           DKKDRDRELRAKGRKNSDDLERHPRE SGRARQESKLKGWDDGKESELKSRENHGR
Sbjct: 181 DKKDRDRELRAKGRKNSDDLERHPRETSGRARQESKLKGWDDGKESELKSRENHGR 236

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BLAST of Carg03360 vs. NCBI nr
Match: XP_022986885.1 (zinc finger CCCH domain-containing protein 25 [Cucurbita maxima])

HSP 1 Score: 428.7 bits (1101), Expect = 2.1e-116
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX
Sbjct: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR 237
           DKKDRDRELRAKGRKNSDD ER+PREISGRARQESKLKGWDDGKESELKSRENHGR
Sbjct: 181 DKKDRDRELRAKGRKNSDDFERNPREISGRARQESKLKGWDDGKESELKSRENHGR 236

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BLAST of Carg03360 vs. NCBI nr
Match: XP_008464049.2 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo])

HSP 1 Score: 389.4 bits (999), Expect = 1.4e-104
Identity = 213/236 (90.25%), Postives = 223/236 (94.49%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRIIRVDHV+KYXXXXX
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR 237
            + + D+ELRAKGRKNSDDL RHPRE SG  RQE++ KGWDD K SELK RE+H R
Sbjct: 181 SRTNHDKELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWR 236

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BLAST of Carg03360 vs. NCBI nr
Match: XP_004147921.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN54364.1 hypothetical protein Csa_4G308540 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 4.1e-104
Identity = 210/235 (89.36%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDHV+KYXXXXX
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHG 236
            +K+ D+EL AKGRK SD+L RHPRE SG  RQE++ +GWDD KESELKSRE+HG
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHG 235

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BLAST of Carg03360 vs. TAIR10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 271.2 bits (692), Expect = 1.0e-72
Identity = 131/174 (75.29%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA +LGR I+VDH   Y     
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKW 175
                      ARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKW 174

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BLAST of Carg03360 vs. TAIR10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3)

HSP 1 Score: 70.9 bits (172), Expect = 2.0e-12
Identity = 33/103 (32.04%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 11  QKINSQ-EASLGISEEASWHA-KYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLV 70
           Q  N Q  A + +S  + + A +   S+ +F+GG+ Y + E  L   F +YGE+VD  ++
Sbjct: 13  QTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72

Query: 71  RDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDH 112
            D+ TG+S+GF FV +    +   A+  L+G  + GR+++V++
Sbjct: 73  LDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115

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BLAST of Carg03360 vs. TAIR10
Match: AT1G71800.1 (cleavage stimulating factor 64)

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-12
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 38  VFVGGIPYDLTEGDLLAVFAQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNL 97
           VFVG IPYD TE  L  +  + G +V   LV D+ TGK KG+ F  Y+D+ + + A  NL
Sbjct: 11  VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query: 98  NGAQILGRIIRVD 111
              +I GR +RVD
Sbjct: 71  QSYEINGRQLRVD 83

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BLAST of Carg03360 vs. TAIR10
Match: AT4G39260.1 (cold, circadian rhythm, and RNA binding 1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-11
Identity = 25/72 (34.72%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 39  FVGGIPYDLTEGDLLAVFAQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLN 98
           FVGG+ +   + DL   F+Q+G+++D  ++ D+ +G+S+GF FV ++D+++   A++ +N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 99  GAQILGRIIRVD 111
           G ++ GR+I V+
Sbjct: 69  GKELDGRVITVN 80

[Close]

BLAST of Carg03360 vs. TAIR10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 4   LTLVKRIQKINSQEAS-LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEI 63
           +  + ++ ++ SQ +S +  S       +   S+ +FVGGI Y   E  L   F++YGE+
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEV 60

Query: 64  VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTK 115
           VD  ++ D+ TG+S+GFAFV +        A+  L+G  + GR IRV++ T+
Sbjct: 61  VDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYATE 111

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BLAST of Carg03360 vs. Swiss-Prot
Match: sp|Q10B98|C3H25_ORYSJ (Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0826400 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 8.2e-72
Identity = 154/230 (66.96%), Postives = 186/230 (80.87%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VKR Q IN +EA LGI E+ SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTQVKRTQVINQKEALLGIGEDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           E+VDVNLVRDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA++LGRI+RVDHV+KYXXXXX
Sbjct: 61  EVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVDHVSKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXX ARGVC AFQ+GEC RGA C++SHDEQR ANTGWG+ E++ ++W HD+  
Sbjct: 121 XXXXXXXXXXEARGVCYAFQKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRHH 180

Query: 181 DKKDRDREL-RAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELK 230
           +     ++   + G +   D  +   + +GR  Q S+ + + D ++S L+
Sbjct: 181 EPPMSHKKFPSSAGEQRFPDRAKEENKSTGREGQSSRSEAYKD-RDSRLR 229

[Close]

BLAST of Carg03360 vs. Swiss-Prot
Match: sp|Q9SD61|C3H42_ARATH (Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=At3g47120 PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.8e-71
Identity = 131/174 (75.29%), Postives = 145/174 (83.33%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK +QKIN++E+ LGIS+EASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTQVKNLQKINARESDLGISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA +LGR I+VDH   Y     
Sbjct: 61  EIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEE 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKW 175
                      ARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED SSKW
Sbjct: 121 EDEETRRQNREARGVCRAFQRGECTRGDSCKFSHDEKRAANTGWGHEEDRSSKW 174

[Close]

BLAST of Carg03360 vs. Swiss-Prot
Match: sp|B0BN49|RBMX2_RAT (RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-42
Identity = 77/115 (66.96%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKY 116
           EIV++NLVRDK TGKSKGF F+ YEDQRST+LAVDN NG +I GR IRVDHV  Y
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVANY 115

[Close]

BLAST of Carg03360 vs. Swiss-Prot
Match: sp|Q9Y388|RBMX2_HUMAN (RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 1.8e-42
Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++++ SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKY 116
           EIV++NLVRDK TGKSKGF F+ YEDQRSTILAVDN NG +I GR IRVDHV+ Y
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNY 115

[Close]

BLAST of Carg03360 vs. Swiss-Prot
Match: sp|Q8R0F5|RBMX2_MOUSE (RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.1e-42
Identity = 77/115 (66.96%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLT VK I ++N +E  LG++E+ SWH++YK SA++FVGG+PY+LTEGD++ VF+QYG
Sbjct: 1   MNPLTKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKY 116
           EIV++NLVRDK TGKSKGF F+ YEDQRST+LAVDN NG +I GR IRVDHV+ Y
Sbjct: 61  EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNY 115

[Close]

BLAST of Carg03360 vs. TrEMBL
Match: tr|A0A1S3CM31|A0A1S3CM31_CUCME (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103502030 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.3e-105
Identity = 213/236 (90.25%), Postives = 223/236 (94.49%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRIIRVDHV+KYXXXXX
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGR 237
            + + D+ELRAKGRKNSDDL RHPRE SG  RQE++ KGWDD K SELK RE+H R
Sbjct: 181 SRTNHDKELRAKGRKNSDDLGRHPRETSGSLRQENRPKGWDDSKGSELKPREDHWR 236

[Close]

BLAST of Carg03360 vs. TrEMBL
Match: tr|A0A0A0KZW7|A0A0A0KZW7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.7e-104
Identity = 210/235 (89.36%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDHV+KYXXXXX
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHVSKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGAAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHG 236
            +K+ D+EL AKGRK SD+L RHPRE SG  RQE++ +GWDD KESELKSRE+HG
Sbjct: 181 SRKNHDKELHAKGRKTSDNLGRHPRETSGSLRQENRPRGWDDSKESELKSREDHG 235

[Close]

BLAST of Carg03360 vs. TrEMBL
Match: tr|A0A1S3BLK5|A0A1S3BLK5_CUCME (zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.9e-104
Identity = 211/237 (89.03%), Postives = 225/237 (94.94%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDH +KYXXXXX
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGRK 238
            +K+ ++ELRAKGRKNSD+L RHPRE SG  RQE++LKG DD KESELKSRE+HG K
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEK 237

[Close]

BLAST of Carg03360 vs. TrEMBL
Match: tr|A0A1S3BLJ3|A0A1S3BLJ3_CUCME (zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491164 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.9e-104
Identity = 211/237 (89.03%), Postives = 225/237 (94.94%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGAQILGRI+RVDH +KYXXXXX
Sbjct: 61  EIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLAVDNLNGAQILGRIVRVDHASKYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWG AEDASSKWGHDKFD
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAADTGWGVAEDASSKWGHDKFD 180

Query: 181 DKKDRDRELRAKGRKNSDDLERHPREISGRARQESKLKGWDDGKESELKSRENHGRK 238
            +K+ ++ELRAKGRKNSD+L RHPRE SG  RQE++LKG DD KESELKSRE+HG K
Sbjct: 181 GRKNDNKELRAKGRKNSDNLGRHPRETSGSLRQENRLKGCDDSKESELKSREDHGEK 237

[Close]

BLAST of Carg03360 vs. TrEMBL
Match: tr|F6GUS5|F6GUS5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g06440 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77
Identity = 182/248 (73.39%), Postives = 196/248 (79.03%), Query Frame = 0


Query: 1   MNPLTLVKRIQKINSQEASLGISEEASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYG 60
           MNPLTLVKRIQKINSQEA+LGISE ASWHAKYK+SAYVFVGGIP+DLTEGDLLAVF+QYG
Sbjct: 1   MNPLTLVKRIQKINSQEAALGISESASWHAKYKESAYVFVGGIPFDLTEGDLLAVFSQYG 60

Query: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYXXXXX 120
           EIVDVNLVRDKGTGKSKGFAFVAYEDQRST LAVDNLNGAQILGRIIRVDHV+ YXXXXX
Sbjct: 61  EIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVDNLNGAQILGRIIRVDHVSNYXXXXX 120

Query: 121 XXXXXXXXXXXARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDASSKWGHDKFD 180
           XXXXXXXXXXXARGVCRAFQRGEC RGAGCKFSHDEQRA+NTGWG +ED SS+WGHDKF 
Sbjct: 121 XXXXXXXXXXXARGVCRAFQRGECNRGAGCKFSHDEQRASNTGWG-SEDKSSRWGHDKFQ 180

Query: 181 DKKDRDRELRAKGRKNSDDLER-------HPREISGRARQESKLKGWDDGKE-----SEL 237
                D      GR NS    R              +  + S+ KG + G+E     SEL
Sbjct: 181 GSTKSD------GRPNSIPTNRVHEPTVGEGHRFGNKDARSSRTKGSEGGRESHHRRSEL 240

The following BLAST results are available for this feature:

BLAST of Carg03360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944591.1	1.1e-117	100.00	zinc finger CCCH domain-containing protein 25 [Cucurbita moschata]	[more]
XP_023512686.1	4.2e-117	99.58	zinc finger CCCH domain-containing protein 25 [Cucurbita pepo subsp. pepo]	[more]
XP_022986885.1	2.1e-116	99.15	zinc finger CCCH domain-containing protein 25 [Cucurbita maxima]	[more]
XP_008464049.2	1.4e-104	90.25	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo]	[more]
XP_004147921.1	4.1e-104	89.36	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis sativus] >KGN5...	[more]

BLAST of Carg03360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47120.1	1.0e-72	75.29	RNA recognition motif (RRM)-containing protein	[more]
AT5G61030.1	2.0e-12	32.04	glycine-rich RNA-binding protein 3	[more]
AT1G71800.1	5.9e-12	45.21	cleavage stimulating factor 64	[more]
AT4G39260.1	1.0e-11	34.72	cold, circadian rhythm, and RNA binding 1	[more]
AT1G74230.1	1.3e-11	33.04	glycine-rich RNA-binding protein 5	[more]

BLAST of Carg03360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q10B98\|C3H25_ORYSJ	8.2e-72	66.96	Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa subsp. japonica OX...	[more]
sp\|Q9SD61\|C3H42_ARATH	1.8e-71	75.29	Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN...	[more]
sp\|B0BN49\|RBMX2_RAT	1.4e-42	66.96	RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus OX=10116 GN=Rbmx2 PE=...	[more]
sp\|Q9Y388\|RBMX2_HUMAN	1.8e-42	66.96	RNA-binding motif protein, X-linked 2 OS=Homo sapiens OX=9606 GN=RBMX2 PE=1 SV=2	[more]
sp\|Q8R0F5\|RBMX2_MOUSE	3.1e-42	66.96	RNA-binding motif protein, X-linked 2 OS=Mus musculus OX=10090 GN=Rbmx2 PE=1 SV=...	[more]

BLAST of Carg03360 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CM31\|A0A1S3CM31_CUCME	9.3e-105	90.25	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
tr\|A0A0A0KZW7\|A0A0A0KZW7_CUCSA	2.7e-104	89.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G308540 PE=4 SV=1	[more]
tr\|A0A1S3BLK5\|A0A1S3BLK5_CUCME	7.9e-104	89.03	zinc finger CCCH domain-containing protein 25-like isoform X2 OS=Cucumis melo OX...	[more]
tr\|A0A1S3BLJ3\|A0A1S3BLJ3_CUCME	7.9e-104	89.03	zinc finger CCCH domain-containing protein 25-like isoform X1 OS=Cucumis melo OX...	[more]
tr\|F6GUS5\|F6GUS5_VITVI	1.3e-77	73.39	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g06440 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR036855	Znf_CCCH_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR000571	Znf_CCCH

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03360-RA	Carg03360-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 115..135
None	No IPR available	GENE3D	G3DSA:1.10.150.840		coord: 129..185 e-value: 8.1E-6 score: 27.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..390
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 1..245
None	No IPR available	PANTHER	PTHR23139:SF34	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..245
None	No IPR available	CDD	cd12411	RRM_ist3_like	coord: 27..112 e-value: 2.37288E-59 score: 188.616
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 132..156 e-value: 0.001 score: 28.3
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 135..155 e-value: 7.2E-5 score: 22.5
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 130..157 score: 14.802
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 1.7E-26 score: 104.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..108 e-value: 1.3E-21 score: 76.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 19.741
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 26..128 e-value: 7.2E-29 score: 102.2
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	SSF90229	CCCH zinc finger	coord: 133..155
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 27..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03360	Cla013355	Watermelon (97103) v1	carwmB0330
Carg03360	MELO3C025859	Melon (DHL92) v3.5.1	carmeB0339
Carg03360	ClCG02G019610	Watermelon (Charleston Gray)	carwcgB0327
Carg03360	CmaCh20G003510	Cucurbita maxima (Rimu)	carcmaB0473
Carg03360	CmoCh20G003770	Cucurbita moschata (Rifu)	carcmoB0464
Carg03360	Lsi10G014270	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03360	Cp4.1LG16g06510	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03360	MELO3C025859.2	Melon (DHL92) v3.6.1	carmedB0345
Carg03360	Cla97C02G045620	Watermelon (97103) v2	carwmbB0346
Carg03360	Bhi10G000627	Wax gourd	carwgoB0419

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03360	Watermelon (Charleston Gray)	carwcgB0333
Carg03360	Watermelon (97103) v1	carwmB0324
Carg03360	Silver-seed gourd	carcarB097
Carg03360	Silver-seed gourd	carcarB186
Carg03360	Silver-seed gourd	carcarB357
Carg03360	Silver-seed gourd	carcarB360
Carg03360	Cucumber (Gy14) v2	carcgybB0346
Carg03360	Cucumber (Gy14) v2	carcgybB0350
Carg03360	Cucumber (Gy14) v1	carcgyB0393
Carg03360	Cucurbita maxima (Rimu)	carcmaB0477
Carg03360	Cucurbita maxima (Rimu)	carcmaB0480
Carg03360	Cucurbita moschata (Rifu)	carcmoB0467
Carg03360	Cucurbita pepo (Zucchini)	carcpeB0466
Carg03360	Cucurbita pepo (Zucchini)	carcpeB0467
Carg03360	Cucurbita pepo (Zucchini)	carcpeB0475
Carg03360	Cucurbita pepo (Zucchini)	carcpeB0481
Carg03360	Wild cucumber (PI 183967)	carcpiB0368
Carg03360	Wild cucumber (PI 183967)	carcpiB0373
Carg03360	Cucumber (Chinese Long) v2	carcuB0365
Carg03360	Cucumber (Chinese Long) v2	carcuB0370
Carg03360	Cucumber (Chinese Long) v3	carcucB0369
Carg03360	Cucumber (Chinese Long) v3	carcucB0374