CmaCh20G003180 (gene) Cucurbita maxima (Rimu)

NameCmaCh20G003180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
LocationCma_Chr20 : 1573717 .. 1574145 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAACAGTTTAAGGTGTTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATACGAATCGTTCATTTGAACGGCCACGTCGAAGAAATTGCCCATCCCATCACCGCCGGCGAGGTCCTAAAAGCGAACCCAAATCATGTTCTTACTAAGCCTTCTTCACAAGGGGTTGTTCGTCGGATTCTGATTCTCTCGCCGGAATCTGAGCTCAAAAGGGGCACTATTTATTTCGTGATTCCGGTGACTTCTCTACCGGAGAAGAAAAGAAACGCCGGAAGCAGCCTCAAAACTCCGTCTTCAGAGGTCAAAACTGTACCGCCACCGCAGACAGTGATTCTTACCTCTCCGATGTTGTATCCGACAAGAAACCGTCGCGGCGGGACCGCCGCGGTGCCCGGGTGGTCGTATGGCGGCCCCGTTTAG

mRNA sequence

ATGGGTAACAGTTTAAGGTGTTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATACGAATCGTTCATTTGAACGGCCACGTCGAAGAAATTGCCCATCCCATCACCGCCGGCGAGGTCCTAAAAGCGAACCCAAATCATGTTCTTACTAAGCCTTCTTCACAAGGGGTTGTTCGTCGGATTCTGATTCTCTCGCCGGAATCTGAGCTCAAAAGGGGCACTATTTATTTCGTGATTCCGGTGACTTCTCTACCGGAGAAGAAAAGAAACGCCGGAAGCAGCCTCAAAACTCCGTCTTCAGAGGTCAAAACTGTACCGCCACCGCAGACAGTGATTCTTACCTCTCCGATGTTGTATCCGACAAGAAACCGTCGCGGCGGGACCGCCGCGGTGCCCGGGTGGTCGTATGGCGGCCCCGTTTAG

Coding sequence (CDS)

ATGGGTAACAGTTTAAGGTGTTGTTTGGCTTGTGTTCTTCCTTGTGGAGCTCTTGATTTGATACGAATCGTTCATTTGAACGGCCACGTCGAAGAAATTGCCCATCCCATCACCGCCGGCGAGGTCCTAAAAGCGAACCCAAATCATGTTCTTACTAAGCCTTCTTCACAAGGGGTTGTTCGTCGGATTCTGATTCTCTCGCCGGAATCTGAGCTCAAAAGGGGCACTATTTATTTCGTGATTCCGGTGACTTCTCTACCGGAGAAGAAAAGAAACGCCGGAAGCAGCCTCAAAACTCCGTCTTCAGAGGTCAAAACTGTACCGCCACCGCAGACAGTGATTCTTACCTCTCCGATGTTGTATCCGACAAGAAACCGTCGCGGCGGGACCGCCGCGGTGCCCGGGTGGTCGTATGGCGGCCCCGTTTAG

Protein sequence

MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVVRRILILSPESELKRGTIYFVIPVTSLPEKKRNAGSSLKTPSSEVKTVPPPQTVILTSPMLYPTRNRRGGTAAVPGWSYGGPV
BLAST of CmaCh20G003180 vs. TrEMBL
Match: A0A0A0KBY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G217470 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 8.7e-47
Identity = 104/142 (73.24%), Postives = 114/142 (80.28%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG+VLKANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKRNAGSSLKTPSSEVK--TVPPPQTVILTSP 120
           RRILILSPESELKRG+IYF+IP TSLPEKKRNA ++LKTPS +VK  TV    T   T  
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNAATTLKTPSRKVKNCTVAAVPTTADTDS 120

Query: 121 ML-------YPTRNRRGGTAAV 134
            L        P+R  R G+  +
Sbjct: 121 YLSDVVSDKKPSRRERRGSRVI 142

BLAST of CmaCh20G003180 vs. TrEMBL
Match: A0A166CAG3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012266 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.7e-40
Identity = 92/134 (68.66%), Postives = 104/134 (77.61%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEI  P+TAGE+L  NPNHVL+KP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEITRPVTAGEILSNNPNHVLSKPCSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKR---NAGSSLKTPSS----EVKTVPPPQTV 120
           RRILILSPE+ELKRG+IYF+IP +SLPEKKR   N  +S K P S    +V  +P P   
Sbjct: 61  RRILILSPETELKRGSIYFLIPSSSLPEKKRNHKNPKTSSKKPKSINSIDVVVLPDPCQK 120

Query: 121 ILTSPMLYPTRNRR 128
           I+TS      R+RR
Sbjct: 121 IVTSEKKASRRDRR 134

BLAST of CmaCh20G003180 vs. TrEMBL
Match: I1LLT3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G163800 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.6e-40
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 1

Query: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
          MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI  PITAGEVLKANPNHVL+KPSSQGVV
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61 RRILILSPESELKRGTIYFVIPVTSLPEKKRNAG 95
          RRILILSPE+ELKRG+IYF+IP +SLPEKKR AG
Sbjct: 61 RRILILSPETELKRGSIYFLIPESSLPEKKRLAG 94

BLAST of CmaCh20G003180 vs. TrEMBL
Match: A0A0B2QN20_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026754 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.6e-40
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 1

Query: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
          MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI  PITAGEVLKANPNHVL+KPSSQGVV
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61 RRILILSPESELKRGTIYFVIPVTSLPEKKRNAG 95
          RRILILSPE+ELKRG+IYF+IP +SLPEKKR AG
Sbjct: 61 RRILILSPETELKRGSIYFLIPESSLPEKKRLAG 94

BLAST of CmaCh20G003180 vs. TrEMBL
Match: A0A0B2NYG3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_028318 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.0e-40
Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 1

Query: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
          MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI  PITAGEVLKANPNHVL+KPSSQGVV
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61 RRILILSPESELKRGTIYFVIPVTSLPEKKRNAG 95
          RRILILSPE+ELKRG+IYF+IP +SLPE KR+AG
Sbjct: 61 RRILILSPETELKRGSIYFLIPESSLPENKRHAG 94

BLAST of CmaCh20G003180 vs. TAIR10
Match: AT2G30230.1 (AT2G30230.1 unknown protein)

HSP 1 Score: 164.1 bits (414), Expect = 6.4e-41
Identity = 77/91 (84.62%), Postives = 87/91 (95.60%), Query Frame = 1

Query: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
          MGNSLRCCLACVLPCGALDLIRIVHLNGHV+EI  P+TAGE+L+ANPNHVL+KP SQGVV
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query: 61 RRILILSPESELKRGTIYFVIPVTSLPEKKR 92
          R+ILILSPESELKRG+IYF+IP TS+PEKK+
Sbjct: 61 RKILILSPESELKRGSIYFLIPDTSMPEKKK 91

BLAST of CmaCh20G003180 vs. TAIR10
Match: AT1G06980.1 (AT1G06980.1 unknown protein)

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-40
Identity = 78/91 (85.71%), Postives = 86/91 (94.51%), Query Frame = 1

Query: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
          MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI   ITAGE+L+ANPNHVL+KP SQGVV
Sbjct: 1  MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVV 60

Query: 61 RRILILSPESELKRGTIYFVIPVTSLPEKKR 92
          R+ILILSPESELKRG+IYF+IP +SLPEKKR
Sbjct: 61 RKILILSPESELKRGSIYFLIPDSSLPEKKR 91

BLAST of CmaCh20G003180 vs. TAIR10
Match: AT1G29195.1 (AT1G29195.1 unknown protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.4e-24
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSS---- 60
           M  ++RCC+AC+LPCGALD+IRIVH NGHVEEI+  ITA E++KA+P HVL KPSS    
Sbjct: 1   MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query: 61  ---QGVV--RRILILSPESELKRGTIYFVIPVTSLPEKKRNAGSSLKTPSSEVKTV 108
              + V+   +I+I+ PE+EL+RG IYF++P T     K   G  ++   S    V
Sbjct: 61  HDERDVISATKIVIVPPEAELQRGKIYFLMPATK--SDKCAGGGKIRREKSNANAV 114

BLAST of CmaCh20G003180 vs. NCBI nr
Match: gi|659127666|ref|XP_008463824.1| (PREDICTED: uncharacterized protein LOC103501874 [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 7.3e-47
Identity = 95/105 (90.48%), Postives = 102/105 (97.14%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEI HPITAG+VLKANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEITHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKRNAGSSLKTPSSEVK 106
           RRILILSPESELKRG+IYF+IP TSLPEKKRNAG++LKTPS +VK
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNAGTTLKTPSRKVK 105

BLAST of CmaCh20G003180 vs. NCBI nr
Match: gi|449463312|ref|XP_004149378.1| (PREDICTED: uncharacterized protein LOC101207122 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-46
Identity = 104/142 (73.24%), Postives = 114/142 (80.28%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG+VLKANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKRNAGSSLKTPSSEVK--TVPPPQTVILTSP 120
           RRILILSPESELKRG+IYF+IP TSLPEKKRNA ++LKTPS +VK  TV    T   T  
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNAATTLKTPSRKVKNCTVAAVPTTADTDS 120

Query: 121 ML-------YPTRNRRGGTAAV 134
            L        P+R  R G+  +
Sbjct: 121 YLSDVVSDKKPSRRERRGSRVI 142

BLAST of CmaCh20G003180 vs. NCBI nr
Match: gi|657951821|ref|XP_008354594.1| (PREDICTED: uncharacterized protein LOC103418232 [Malus domestica])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 90/139 (64.75%), Postives = 109/139 (78.42%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI+HP+TAGE+L+ANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEISHPVTAGEILEANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKRNAGS------SLKTPSSEVKTVPPPQTVI 120
           R+ILILSPESELKRG+IYF+IP +S+PEK++ + S      S K+  S+  +     T I
Sbjct: 61  RKILILSPESELKRGSIYFLIPSSSVPEKRKKSKSNGIKKPSKKSSKSQSDSTDRYLTEI 120

Query: 121 LTSPMLYPTRNRRGGTAAV 134
           +T       R+RR G  AV
Sbjct: 121 VTEKKFTSRRDRRAGRVAV 139

BLAST of CmaCh20G003180 vs. NCBI nr
Match: gi|720003485|ref|XP_010257008.1| (PREDICTED: uncharacterized protein LOC104597250 [Nelumbo nucifera])

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-40
Identity = 95/149 (63.76%), Postives = 108/149 (72.48%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALD+IRIVHLNGHVEEI HPI+AGEVLKANPNHVL+KPSSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDVIRIVHLNGHVEEITHPISAGEVLKANPNHVLSKPSSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKRNA------GSSLKTPSSEVKTVPPPQTVI 120
           RRILILSPES+LKRG+IYF+IP +S+PEKK+ +      G SLK  S + K      T +
Sbjct: 61  RRILILSPESDLKRGSIYFLIPESSIPEKKKKSCNLNGNGHSLKKSSKKSKKATSLITTV 120

Query: 121 LTSPMLYPT----------RNRRGGTAAV 134
            T    Y T          R+RR G   V
Sbjct: 121 ATDCDRYLTEILSEKKSSRRDRRSGRVGV 149

BLAST of CmaCh20G003180 vs. NCBI nr
Match: gi|1021045729|gb|KZN03510.1| (hypothetical protein DCAR_012266 [Daucus carota subsp. sativus])

HSP 1 Score: 172.9 bits (437), Expect = 3.9e-40
Identity = 92/134 (68.66%), Postives = 104/134 (77.61%), Query Frame = 1

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEVLKANPNHVLTKPSSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEI  P+TAGE+L  NPNHVL+KP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEITRPVTAGEILSNNPNHVLSKPCSQGVV 60

Query: 61  RRILILSPESELKRGTIYFVIPVTSLPEKKR---NAGSSLKTPSS----EVKTVPPPQTV 120
           RRILILSPE+ELKRG+IYF+IP +SLPEKKR   N  +S K P S    +V  +P P   
Sbjct: 61  RRILILSPETELKRGSIYFLIPSSSLPEKKRNHKNPKTSSKKPKSINSIDVVVLPDPCQK 120

Query: 121 ILTSPMLYPTRNRR 128
           I+TS      R+RR
Sbjct: 121 IVTSEKKASRRDRR 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBY5_CUCSA8.7e-4773.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G217470 PE=4 SV=1[more]
A0A166CAG3_DAUCA2.7e-4068.66Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_012266 PE=4 SV=1[more]
I1LLT3_SOYBN4.6e-4089.36Uncharacterized protein OS=Glycine max GN=GLYMA_11G163800 PE=4 SV=1[more]
A0A0B2QN20_GLYSO4.6e-4089.36Uncharacterized protein OS=Glycine soja GN=glysoja_026754 PE=4 SV=1[more]
A0A0B2NYG3_GLYSO6.0e-4088.30Uncharacterized protein OS=Glycine soja GN=glysoja_028318 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G30230.16.4e-4184.62 unknown protein[more]
AT1G06980.13.2e-4085.71 unknown protein[more]
AT1G29195.12.4e-2449.14 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659127666|ref|XP_008463824.1|7.3e-4790.48PREDICTED: uncharacterized protein LOC103501874 [Cucumis melo][more]
gi|449463312|ref|XP_004149378.1|1.2e-4673.24PREDICTED: uncharacterized protein LOC101207122 [Cucumis sativus][more]
gi|657951821|ref|XP_008354594.1|1.3e-4064.75PREDICTED: uncharacterized protein LOC103418232 [Malus domestica][more]
gi|720003485|ref|XP_010257008.1|1.7e-4063.76PREDICTED: uncharacterized protein LOC104597250 [Nelumbo nucifera][more]
gi|1021045729|gb|KZN03510.1|3.9e-4068.66hypothetical protein DCAR_012266 [Daucus carota subsp. sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025322DUF4228_plant
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G003180.1CmaCh20G003180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..90
score: 1.8
NoneNo IPR availablePANTHERPTHR33052FAMILY NOT NAMEDcoord: 2..92
score: 5.9
NoneNo IPR availablePANTHERPTHR33052:SF26SUBFAMILY NOT NAMEDcoord: 2..92
score: 5.9