CmaCh20G002180 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAACGGAGGAGCCATGGAGGATCAACGAAAACAGAAGGCAGAACGGCTCCGGAAGAAGAGTAATAAGATCTCTCTCGAGGACTACCTCGATTTCTTCTCCTCCGACAAGCAACTATTCCTCCCCGTCGCTTATCTCAATCAGGTCCTGATCTACATTGTTCATTTTTTCGTCCTCACTAATTTCTCTGTGACGATCTGTTTGGATTTCGTTTCGAACTACTTGCGTGTTGATTTTTTAACCGATGCTTCTGTTTAACTTGATGTGCAGATCATTCGCATGCATGGCTACATGAATATCAAAGGTCTGAAGGTGAGTTTTGCCGAACCGATACGTATGTTTAATTTGCTTGGTTGAAAATTAATCATAATAACCTTTGTTTGCATCTCTCACGCAATGTTCACCAATTGGTTTCTAGTTTGAACTTCTTGCTTTGAAAAATTAGAGAACGTTTACTCAAATTGATTGAAATTCCTTATCAATTTTTTTCTATGTTTGGGACTTAATATGGATCCTCTGTTGTGCGTTCCAAATTAGAGAACGTTTACGTAATGTTCTAAATTAATTTAGCATAAAATAGTGGGAAGAGTCCGGAAAATGAGATTAGAAAACGATGCTGCTCAGCAGCTGAAGTAATTTGATGTATCCTCACTCCTAGTCTAATAGGAACCGATTAATTACATTCACATCCTCTCTCTCTTGCTTAGAATGTAGTGAAGGAAGCCGTAGGTACAATTAATCTGGTCAATCTCTCTCGTTCCACACTCAAAGAGAGCATCTCATCATCCGCGTCCATTACGCTTGAGGACGTAATCTCGGACCTCAAAAACCTCGAATGGCAAGAATGCAGTGTGACATCTGTTCTGAATTTCAGTTCCTGGAAGCAGAATAACTCCGATCCGAGTCCGGACCGCCAGGAGCCGACTAGTGCCTCAAAGAAGTCAGGAAAGAAATTACGAGTATTGAGTGAATGTAATAGTCAAGAAGTCGAGGCAATTGATGGAGTTTCCTCGTCTTGTGCCTCGAAGAAGCCGGGAAGTGAATCTCAGAGTAAGAGAAAGAAAACAGCTGCTTAA CAACGGAGGAGCCATGGAGGATCAACGAAAACAGAAGGCAGAACGGCTCCGGAAGAAGAGTAATAAGATCTCTCTCGAGGACTACCTCGATTTCTTCTCCTCCGACAAGCAACTATTCCTCCCCGTCGCTTATCTCAATCAGATCATTCGCATGCATGGCTACATGAATATCAAAGGTCTGAAGAATGTAGTGAAGGAAGCCGTAGGTACAATTAATCTGGTCAATCTCTCTCGTTCCACACTCAAAGAGAGCATCTCATCATCCGCGTCCATTACGCTTGAGGACGTAATCTCGGACCTCAAAAACCTCGAATGGCAAGAATGCAGTGTGACATCTGTTCTGAATTTCAGTTCCTGGAAGCAGAATAACTCCGATCCGAGTCCGGACCGCCAGGAGCCGACTAGTGCCTCAAAGAAGTCAGGAAAGAAATTACGAGTATTGAGTGAATGTAATAGTCAAGAAGTCGAGGCAATTGATGGAGTTTCCTCGTCTTGTGCCTCGAAGAAGCCGGGAAGTGAATCTCAGAGTAAGAGAAAGAAAACAGCTGCTTAA ATGGAGGATCAACGAAAACAGAAGGCAGAACGGCTCCGGAAGAAGAGTAATAAGATCTCTCTCGAGGACTACCTCGATTTCTTCTCCTCCGACAAGCAACTATTCCTCCCCGTCGCTTATCTCAATCAGATCATTCGCATGCATGGCTACATGAATATCAAAGGTCTGAAGAATGTAGTGAAGGAAGCCGTAGGTACAATTAATCTGGTCAATCTCTCTCGTTCCACACTCAAAGAGAGCATCTCATCATCCGCGTCCATTACGCTTGAGGACGTAATCTCGGACCTCAAAAACCTCGAATGGCAAGAATGCAGTGTGACATCTGTTCTGAATTTCAGTTCCTGGAAGCAGAATAACTCCGATCCGAGTCCGGACCGCCAGGAGCCGACTAGTGCCTCAAAGAAGTCAGGAAAGAAATTACGAGTATTGAGTGAATGTAATAGTCAAGAAGTCGAGGCAATTGATGGAGTTTCCTCGTCTTGTGCCTCGAAGAAGCCGGGAAGTGAATCTCAGAGTAAGAGAAAGAAAACAGCTGCTTAA MEDQRKQKAERLRKKSNKISLEDYLDFFSSDKQLFLPVAYLNQIIRMHGYMNIKGLKNVVKEAVGTINLVNLSRSTLKESISSSASITLEDVISDLKNLEWQECSVTSVLNFSSWKQNNSDPSPDRQEPTSASKKSGKKLRVLSECNSQEVEAIDGVSSSCASKKPGSESQSKRKKTAA
BLAST of CmaCh20G002180 vs. TrEMBL
Match: V4L939_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009758mg PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.3e-18 Identity = 57/138 (41.30%), Postives = 92/138 (66.67%), Query Frame = 1
BLAST of CmaCh20G002180 vs. TrEMBL
Match: K4DCH2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17 Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
BLAST of CmaCh20G002180 vs. TrEMBL
Match: A0A0B0PK16_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_00109 PE=4 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 4.1e-17 Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 1
BLAST of CmaCh20G002180 vs. TrEMBL
Match: A0A061DS97_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_001700 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 6.9e-17 Identity = 69/165 (41.82%), Postives = 95/165 (57.58%), Query Frame = 1
BLAST of CmaCh20G002180 vs. TrEMBL
Match: D7KG22_ARALL (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678249 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 9.1e-17 Identity = 55/126 (43.65%), Postives = 86/126 (68.25%), Query Frame = 1
BLAST of CmaCh20G002180 vs. TAIR10
Match: AT1G06320.1 (AT1G06320.1 unknown protein) HSP 1 Score: 90.5 bits (223), Expect = 1.1e-18 Identity = 52/126 (41.27%), Postives = 86/126 (68.25%), Query Frame = 1
BLAST of CmaCh20G002180 vs. NCBI nr
Match: gi|567154972|ref|XP_006417935.1| (hypothetical protein EUTSA_v10009758mg [Eutrema salsugineum]) HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18 Identity = 57/138 (41.30%), Postives = 92/138 (66.67%), Query Frame = 1
BLAST of CmaCh20G002180 vs. NCBI nr
Match: gi|985470270|ref|XP_015380948.1| (PREDICTED: uncharacterized protein LOC102610754 [Citrus sinensis]) HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18 Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = 1
BLAST of CmaCh20G002180 vs. NCBI nr
Match: gi|694326720|ref|XP_009354264.1| (PREDICTED: uncharacterized protein LOC103945420 [Pyrus x bretschneideri]) HSP 1 Score: 98.2 bits (243), Expect = 1.5e-17 Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 1
BLAST of CmaCh20G002180 vs. NCBI nr
Match: gi|460412831|ref|XP_004251801.1| (PREDICTED: uncharacterized protein LOC101257540 isoform X1 [Solanum lycopersicum]) HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17 Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
BLAST of CmaCh20G002180 vs. NCBI nr
Match: gi|723748304|ref|XP_010313869.1| (PREDICTED: uncharacterized protein LOC101257540 isoform X2 [Solanum lycopersicum]) HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17 Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |