CmaCh20G001510 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G001510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cma_Chr20 : 747877 .. 748512 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGCCAAGGACAAGGAAAGCGCCCACCACGACGAGGACTACCAACAATTCCTCCGCCGCCTCGGCATCGTGGTCCTGACCTTAATCATCATCCTGGGCATTGTCATCTTCATCGTATGGGCCGTCCTCCGCCCCACAAAGCCCAATTTCATCCTCCAAGACGTCACCGTTTTCGGCCTCAACGCCTCATCCTCCCCAAATCTCTTGTCCCTCAGCATGCAAGTCACCATCTCTTCCCACAACCCCAACGACCGCATCGGCATTTATTACGTCACCATGGATGTCTATGGCGCATACCGTGGCCAGCAGCTCACTCTTCCGACTCTCCTCCCTTCCACATACCAAGGCCACAGAGACGTCGTCGTTTGGTCCCCTTTCCTTAGTGGCGATGCCGTCCCCGTGGCCCCTGACGTGGCCTTGTCCTTGCAGCAGGACCAGAACGTTGGGGCGGTGTTGTTCAATGTGAAAATAGACGGGCAGGTGAAGTGGAAGGTTGGCACCTGGATTTCGGGGAGGTACCATTTGAACGTTAACTGTCCCGCGTTTATTAAATTTAGGAACCCTGACCACGCCATCGCTGTGGGTTCTGCCATGAAGTTCCAGATTGTCCAAAGCTGCAACGTTGAAGTCTGA

mRNA sequence

ATGAGCGCCAAGGACAAGGAAAGCGCCCACCACGACGAGGACTACCAACAATTCCTCCGCCGCCTCGGCATCGTGGTCCTGACCTTAATCATCATCCTGGGCATTGTCATCTTCATCGTATGGGCCGTCCTCCGCCCCACAAAGCCCAATTTCATCCTCCAAGACGTCACCGTTTTCGGCCTCAACGCCTCATCCTCCCCAAATCTCTTGTCCCTCAGCATGCAAGTCACCATCTCTTCCCACAACCCCAACGACCGCATCGGCATTTATTACGTCACCATGGATGTCTATGGCGCATACCGTGGCCAGCAGCTCACTCTTCCGACTCTCCTCCCTTCCACATACCAAGGCCACAGAGACGTCGTCGTTTGGTCCCCTTTCCTTAGTGGCGATGCCGTCCCCGTGGCCCCTGACGTGGCCTTGTCCTTGCAGCAGGACCAGAACGTTGGGGCGGTGTTGTTCAATGTGAAAATAGACGGGCAGGTGAAGTGGAAGGTTGGCACCTGGATTTCGGGGAGGTACCATTTGAACGTTAACTGTCCCGCGTTTATTAAATTTAGGAACCCTGACCACGCCATCGCTGTGGGTTCTGCCATGAAGTTCCAGATTGTCCAAAGCTGCAACGTTGAAGTCTGA

Coding sequence (CDS)

ATGAGCGCCAAGGACAAGGAAAGCGCCCACCACGACGAGGACTACCAACAATTCCTCCGCCGCCTCGGCATCGTGGTCCTGACCTTAATCATCATCCTGGGCATTGTCATCTTCATCGTATGGGCCGTCCTCCGCCCCACAAAGCCCAATTTCATCCTCCAAGACGTCACCGTTTTCGGCCTCAACGCCTCATCCTCCCCAAATCTCTTGTCCCTCAGCATGCAAGTCACCATCTCTTCCCACAACCCCAACGACCGCATCGGCATTTATTACGTCACCATGGATGTCTATGGCGCATACCGTGGCCAGCAGCTCACTCTTCCGACTCTCCTCCCTTCCACATACCAAGGCCACAGAGACGTCGTCGTTTGGTCCCCTTTCCTTAGTGGCGATGCCGTCCCCGTGGCCCCTGACGTGGCCTTGTCCTTGCAGCAGGACCAGAACGTTGGGGCGGTGTTGTTCAATGTGAAAATAGACGGGCAGGTGAAGTGGAAGGTTGGCACCTGGATTTCGGGGAGGTACCATTTGAACGTTAACTGTCCCGCGTTTATTAAATTTAGGAACCCTGACCACGCCATCGCTGTGGGTTCTGCCATGAAGTTCCAGATTGTCCAAAGCTGCAACGTTGAAGTCTGA

Protein sequence

MSAKDKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV

Homology

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BLAST of CmaCh20G001510 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-48
Identity = 95/188 (50.53%), Postives = 133/188 (70.74%), Query Frame = 1


Query: 25  VVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNASSSPNLLSLSMQVTISSHNPN 84
           V++  III+ I IF+VW +L+PTKP FILQD TV+  N S  PNLL+ + Q+TI+S N N
Sbjct: 24  VIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQ-PNLLTSNFQITIASRNRN 83

Query: 85  DRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVWSPFLSGDAVPVAPDVALSLQ 144
            RIGIYY  + VY  YR QQ+TL T +P TYQGH++  VWSPF+ G++VP+AP  A++L 
Sbjct: 84  SRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALG 143

Query: 145 QDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFIKFRNPDHAIAVG-SAMKFQI 204
            +QN G V   ++ DG+V+WKVGT I+G+YHL+V C AFI   +    + VG +A+K+ +
Sbjct: 144 DEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYML 203

Query: 205 VQSCNVEV 212
           +  C+V V
Sbjct: 204 INKCSVNV 210

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BLAST of CmaCh20G001510 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.3e-14
Identity = 46/157 (29.30%), Postives = 84/157 (53.50%), Query Frame = 1


Query: 25  VVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNASSSPNLLSLSMQVTISSHNPN 84
           V+++LI+ILG+   I W ++RP    F + D ++   + +S  N+L  ++ +T+   NPN
Sbjct: 44  VIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTSPDNILRYNLALTVPVRNPN 103

Query: 85  DRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVWSPFLSG-DAVPVAPDVALSL 144
            RIG+YY  ++ +  Y G++ +  TL P  YQGH++  V +P   G + V      + +L
Sbjct: 104 KRIGLYYDRIEAHAYYEGKRFSTITLTP-FYQGHKNTTVLTPTFQGQNLVIFNAGQSRTL 163

Query: 145 QQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 181
             ++  G     +K   +V++K+G     R    V+C
Sbjct: 164 NAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199

[Close]

BLAST of CmaCh20G001510 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 43/159 (27.04%), Postives = 79/159 (49.69%), Query Frame = 1


Query: 25  VVLTLIIILGIVIFIVWAVLRPTKPNFILQD--VTVFGLNASSSPNLLSLSMQVTISSHN 84
           +++T+ ++LGI   I+W + RP    F + D  +T F L+ +   N L  ++ +  +  N
Sbjct: 51  ILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPT---NNLRYNLDLNFTIRN 110

Query: 85  PNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRD-VVVWSPFLSGDAVPVAPDVAL 144
           PN RIG+YY  ++V G Y  Q+  +   +   YQGH++  VV +  +    V +      
Sbjct: 111 PNRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERK 170

Query: 145 SLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 181
            L +D N      + K+  ++++K G   S R+   + C
Sbjct: 171 DLNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKC 206

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BLAST of CmaCh20G001510 vs. TrEMBL
Match: A0A0A0KI64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 2.6e-103
Identity = 188/212 (88.68%), Postives = 203/212 (95.75%), Query Frame = 1


Query: 1   MSAKD-KESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVF 60
           MSAKD K+  HH++DYQQFLRRLGIV+L LIII+GI+IFIVWAVLRP+KP+FILQDVTVF
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHR 120
           GLNAS +PNLLSL +QVTISS NPNDRIGIYY+TMDVYGAYRGQQ+TLPTLLPSTYQGHR
Sbjct: 61  GLNASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHR 120

Query: 121 DVVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVN 180
           DVVVWSPFLSGDAVPVAPDVA+SLQQD+NVGAVLFNVKIDGQVKWKVGTWISGRYHLNVN
Sbjct: 121 DVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVN 180

Query: 181 CPAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           CPAFIKF NPD AIA+GSAMKFQIVQSCNVEV
Sbjct: 181 CPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

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BLAST of CmaCh20G001510 vs. TrEMBL
Match: A0A0A0LVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 9.5e-74
Identity = 132/213 (61.97%), Postives = 171/213 (80.28%), Query Frame = 1


Query: 1   MSAKDKESAHH-DEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVF 60
           M+ KD +  HH D + ++  RR+  V+ T+++++G+VIF++WA+LRP+KP  ILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNASS-SPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGH 120
           GLN SS  P  +S +MQ+TISSHNPN+RIG+YY  MDVY AYRGQQ+TLPTLLP TYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 RDVVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           NCPA+IKF +P + IA G AMKFQ VQ C V++
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]

BLAST of CmaCh20G001510 vs. TrEMBL
Match: A0A0D2QBT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 5.1e-67
Identity = 121/211 (57.35%), Postives = 163/211 (77.25%), Query Frame = 1


Query: 1   MSAKDKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFG 60
           MSAKD    HHD++ +Q  +R+ + ++ + +++GI+IF+VWA+L P KP FILQDVT++ 
Sbjct: 1   MSAKD--CGHHDDE-EQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIYA 60

Query: 61  LNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRD 120
            N ++ PN+L+ +MQ+T+SS NPNDRIGIYY  +D++ +Y  QQ+TLPTL+P TYQGH D
Sbjct: 61  FNLTA-PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGHLD 120

Query: 121 VVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 180
           V VWSPFL G+AVPVAP +   L QD N G VL N+K+ GQ+KWKVGTWISGRY +N NC
Sbjct: 121 VTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINANC 180

Query: 181 PAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           PA+I F +   AI VGSAMK+Q+VQ+C V+V
Sbjct: 181 PAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

[Close]

BLAST of CmaCh20G001510 vs. TrEMBL
Match: K4C9C2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.6e-65
Identity = 119/211 (56.40%), Postives = 167/211 (79.15%), Query Frame = 1


Query: 1   MSAKDKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFG 60
           MSAKD    HHDE+  +  RRL   ++  II++  +I +++ +LRPTKP+FILQD T++ 
Sbjct: 1   MSAKD--CGHHDEERHKLHRRLFTALVGFIILILFIILLIFLILRPTKPHFILQDATIYS 60

Query: 61  LNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRD 120
            N SS PNLL+ + Q+T++S NPND+IGIYY  +DVY  YRGQQ+TLPTL+P TYQGH+D
Sbjct: 61  FNISS-PNLLTTNFQITLASRNPNDKIGIYYDRLDVYATYRGQQITLPTLVPQTYQGHKD 120

Query: 121 VVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 180
             +WSPF+ G++VPVAP ++ SL++DQ  G VL NVK+DG+V+WKVGT++SG+YHLNVNC
Sbjct: 121 FTIWSPFVYGNSVPVAPYLSESLREDQMAGTVLINVKVDGRVRWKVGTFVSGKYHLNVNC 180

Query: 181 PAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           PA++  +   ++IAVGSAMK+Q+VQ+C+V+V
Sbjct: 181 PAYVGGKMIGNSIAVGSAMKYQLVQNCHVDV 208

[Close]

BLAST of CmaCh20G001510 vs. TrEMBL
Match: A0A059AAQ1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00542 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.6e-65
Identity = 115/206 (55.83%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 6   KESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNASS 65
           KE  H +E+  +  R+L  + L  I+++  +IF+++ +LRP KP F+L+D T++  NASS
Sbjct: 4   KECGHQEEEEHRLYRQLFSLFLGTIVLILFIIFLIFLILRPAKPAFVLRDATIYQFNASS 63

Query: 66  SPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVWS 125
            P+LL+ +MQVT+SS NPN+RIGIYY  +D+Y +YRGQQ+TLPTLLP +YQGH++V+ WS
Sbjct: 64  MPSLLTTNMQVTLSSRNPNERIGIYYQKLDIYASYRGQQITLPTLLPESYQGHKEVIDWS 123

Query: 126 PFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFIK 185
           PFL G AVPV+P +  +L+QDQN G+VL N+K+DG VKWKVGTWISG+YHL+VNCPA + 
Sbjct: 124 PFLYGSAVPVSPFLTGALEQDQNTGSVLVNIKVDGNVKWKVGTWISGKYHLHVNCPALLV 183

Query: 186 FRNPDHAIAVGSAMKFQIVQSCNVEV 212
           F+ P   IA G +MK QI Q C V+V
Sbjct: 184 FKEPTGGIAAGPSMKIQITQHCTVDV 209

[Close]

BLAST of CmaCh20G001510 vs. TAIR10
Match: AT3G44220.1 (AT3G44220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 229.2 bits (583), Expect = 2.4e-60
Identity = 108/207 (52.17%), Postives = 147/207 (71.01%), Query Frame = 1


Query: 5   DKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNAS 64
           +KE  HH ++ ++  +R+G +VL  +  +  V+F+VWA+L P  P F+LQD T++  N S
Sbjct: 3   EKECEHHHDEDEKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIYAFNVS 62

Query: 65  SSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVW 124
             PN L+ ++QVT+SS NPND+IGI+Y  +D+Y +YR QQ+TL TLLP+TYQGH DV +W
Sbjct: 63  Q-PNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGHLDVTIW 122

Query: 125 SPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFI 184
           SPFL G  VPVAP  + +L QD   G VL N+KIDG V+WKVGTW+SGRY L+VNCPA+I
Sbjct: 123 SPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHVNCPAYI 182

Query: 185 KFRNPDHAIAVGSAMKFQIVQSCNVEV 212
                 H    G A+K+Q+VQ C V+V
Sbjct: 183 TLAG--HFSGDGPAVKYQLVQRCAVDV 206

[Close]

BLAST of CmaCh20G001510 vs. TAIR10
Match: AT5G22200.1 (AT5G22200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-56
Identity = 105/207 (50.72%), Postives = 142/207 (68.60%), Query Frame = 1


Query: 5   DKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNAS 64
           D+ + + +   +  +RR+    L LI+ +  V+F+VWA+L P  P F+LQDVT+   N S
Sbjct: 7   DQHNGYEERRMRMMMRRIAWACLGLIVAVAFVVFLVWAILHPHGPRFVLQDVTINDFNVS 66

Query: 65  SSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVW 124
             PN LS ++QVT+SS NPND+IGI+Y  +D+Y  YR Q++TL  LLPSTYQGH +V VW
Sbjct: 67  Q-PNFLSSNLQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQGHLEVTVW 126

Query: 125 SPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFI 184
           SPFL G AVPVAP ++ +L +D   G VL N+KIDG V+WKVG+W+SG Y L+VNCPAFI
Sbjct: 127 SPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKVGSWVSGSYRLHVNCPAFI 186

Query: 185 KFRNPDHAIAVGSAMKFQIVQSCNVEV 212
                      G A+K+Q+VQ C V+V
Sbjct: 187 TVTG--KLTGTGPAIKYQLVQRCAVDV 210

[Close]

BLAST of CmaCh20G001510 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 214.9 bits (546), Expect = 4.7e-56
Identity = 98/208 (47.12%), Postives = 149/208 (71.63%), Query Frame = 1


Query: 6   KESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNASS 65
           K+  +H    ++ +RR+   ++ ++ I+ + I ++WA+L+P+KP FILQD TV+  N S 
Sbjct: 2   KDCENHGHSRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAFNVSG 61

Query: 66  SP-NLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVW 125
           +P NLL+ + Q+T+SS NPN++IGIYY  +DVY  YR QQ+T PT +P TYQGH+DV +W
Sbjct: 62  NPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKDVDIW 121

Query: 126 SPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFI 185
           SPF+ G +VP+AP   +SL  D++ G VL  ++ DG+V+WKVGT+I+G+YHL+V CPA+I
Sbjct: 122 SPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKCPAYI 181

Query: 186 KFRNPDHAIAVG-SAMKFQIVQSCNVEV 212
            F N  + + VG +A+K+    SC+V V
Sbjct: 182 NFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]

BLAST of CmaCh20G001510 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 198.0 bits (502), Expect = 5.9e-51
Identity = 98/208 (47.12%), Postives = 147/208 (70.67%), Query Frame = 1


Query: 6   KESAHHDEDYQQFLRRLGIVVLTLIIILG-IVIFIVWAVLRPTKPNFILQDVTVFGLNAS 65
           K+   HD  +    R++ I  +++I++L  +VI +VWA+L+P+KP F+LQD TVF  N S
Sbjct: 4   KDCGSHDS-HSSCNRKIVIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVFNFNVS 63

Query: 66  SSP-NLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVV 125
            +P NLL+ + Q T+SS NPND+IGIYY  +DVY +YR QQ+TLP+ + +TYQGH++V V
Sbjct: 64  GNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGHKEVNV 123

Query: 126 WSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAF 185
           WSPF+ G +VPVAP  A  L QD + GA++  + +DG+V+WKVG++I+G+YHL+V C A 
Sbjct: 124 WSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHVRCHAL 183

Query: 186 IKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           I F +    + VG   K+ + ++C+V V
Sbjct: 184 INFGSSAAGVIVG---KYMLTETCSVSV 207

[Close]

BLAST of CmaCh20G001510 vs. TAIR10
Match: AT3G52470.1 (AT3G52470.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 195.3 bits (495), Expect = 3.8e-50
Identity = 95/207 (45.89%), Postives = 139/207 (67.15%), Query Frame = 1


Query: 6   KESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFGLNASS 65
           K+  +H    +  +R+L   ++  I+I+ I IF+VW +LRPTKP F+LQD TV+  N S 
Sbjct: 3   KDCGNHGGGKEVVVRKLCAAIIAFIVIVLITIFLVWVILRPTKPRFVLQDATVYAFNLSQ 62

Query: 66  SPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRDVVVWS 125
            PNLL+ + QVTI+S NPN +IGIYY  + VY  Y  QQ+TL T +P TYQGH++V VWS
Sbjct: 63  -PNLLTSNFQVTIASRNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEVNVWS 122

Query: 126 PFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCPAFIK 185
           PF+ G AVP+AP  +++L ++++ G V   ++ DG V+WKV T I+G+YH++V C AFI 
Sbjct: 123 PFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQAFIN 182

Query: 186 FRNPDHAIAVG-SAMKFQIVQSCNVEV 212
             N    + VG +A+K+ +   C+V V
Sbjct: 183 LGNKAAGVLVGDNAVKYTLANKCSVNV 208

[Close]

BLAST of CmaCh20G001510 vs. NCBI nr
Match: gi|659097380|ref|XP_008449594.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 7.4e-104
Identity = 188/211 (89.10%), Postives = 203/211 (96.21%), Query Frame = 1


Query: 1   MSAKDKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFG 60
           MSAKD++   HD+DYQQFLRRLGIV+L LIII+GI+IFIVWAVLRP+KP+FILQDVTVFG
Sbjct: 1   MSAKDEKDCGHDDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFG 60

Query: 61  LNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRD 120
           LNAS SPNLLSL++QVTISS NPNDRIGIYY+TMDVYGAYRGQQ+TLPTLLPSTYQGHRD
Sbjct: 61  LNASVSPNLLSLNLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRD 120

Query: 121 VVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 180
           VVVWSPFLSGDAVPVAPDVA+SLQQD+NVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC
Sbjct: 121 VVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 180

Query: 181 PAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           PAFIKF NPD AIA+GSAMKFQIVQSCNVEV
Sbjct: 181 PAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 211

[Close]

BLAST of CmaCh20G001510 vs. NCBI nr
Match: gi|449444813|ref|XP_004140168.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 3.7e-103
Identity = 188/212 (88.68%), Postives = 203/212 (95.75%), Query Frame = 1


Query: 1   MSAKD-KESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVF 60
           MSAKD K+  HH++DYQQFLRRLGIV+L LIII+GI+IFIVWAVLRP+KP+FILQDVTVF
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHR 120
           GLNAS +PNLLSL +QVTISS NPNDRIGIYY+TMDVYGAYRGQQ+TLPTLLPSTYQGHR
Sbjct: 61  GLNASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHR 120

Query: 121 DVVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVN 180
           DVVVWSPFLSGDAVPVAPDVA+SLQQD+NVGAVLFNVKIDGQVKWKVGTWISGRYHLNVN
Sbjct: 121 DVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVN 180

Query: 181 CPAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           CPAFIKF NPD AIA+GSAMKFQIVQSCNVEV
Sbjct: 181 CPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]

BLAST of CmaCh20G001510 vs. NCBI nr
Match: gi|449443654|ref|XP_004139592.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73
Identity = 132/213 (61.97%), Postives = 171/213 (80.28%), Query Frame = 1


Query: 1   MSAKDKESAHH-DEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVF 60
           M+ KD +  HH D + ++  RR+  V+ T+++++G+VIF++WA+LRP+KP  ILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNASS-SPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGH 120
           GLN SS  P  +S +MQ+TISSHNPN+RIG+YY  MDVY AYRGQQ+TLPTLLP TYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 RDVVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           NCPA+IKF +P + IA G AMKFQ VQ C V++
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]

BLAST of CmaCh20G001510 vs. NCBI nr
Match: gi|659127309|ref|XP_008463636.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 1.2e-72
Identity = 131/213 (61.50%), Postives = 169/213 (79.34%), Query Frame = 1


Query: 1   MSAKDKESAHH-DEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVF 60
           M+ KD +  HH D + ++  RR+  V+ +L++++G+VIF++WA+LRP+KP  ILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFSLLLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNASS-SPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGH 120
           GLN SS  P  +S +MQ+TISSHNPN RIG+YY  MDVY AYRGQQ+TLPTLLP TYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 RDVVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           NCPA+IKF +P + IA G  MKFQ VQ C V++
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]

BLAST of CmaCh20G001510 vs. NCBI nr
Match: gi|823230872|ref|XP_012448156.1| (PREDICTED: protein YLS9 [Gossypium raimondii])

HSP 1 Score: 262.3 bits (669), Expect = 7.2e-67
Identity = 121/211 (57.35%), Postives = 163/211 (77.25%), Query Frame = 1


Query: 1   MSAKDKESAHHDEDYQQFLRRLGIVVLTLIIILGIVIFIVWAVLRPTKPNFILQDVTVFG 60
           MSAKD    HHD++ +Q  +R+ + ++ + +++GI+IF+VWA+L P KP FILQDVT++ 
Sbjct: 1   MSAKD--CGHHDDE-EQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIYA 60

Query: 61  LNASSSPNLLSLSMQVTISSHNPNDRIGIYYVTMDVYGAYRGQQLTLPTLLPSTYQGHRD 120
            N ++ PN+L+ +MQ+T+SS NPNDRIGIYY  +D++ +Y  QQ+TLPTL+P TYQGH D
Sbjct: 61  FNLTA-PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGHLD 120

Query: 121 VVVWSPFLSGDAVPVAPDVALSLQQDQNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNC 180
           V VWSPFL G+AVPVAP +   L QD N G VL N+K+ GQ+KWKVGTWISGRY +N NC
Sbjct: 121 VTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINANC 180

Query: 181 PAFIKFRNPDHAIAVGSAMKFQIVQSCNVEV 212
           PA+I F +   AI VGSAMK+Q+VQ+C V+V
Sbjct: 181 PAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

The following BLAST results are available for this feature:

BLAST of CmaCh20G001510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	1.5e-48	50.53	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
YLS9_ARATH	9.3e-14	29.30	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	3.7e-10	27.04	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of CmaCh20G001510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI64_CUCSA	2.6e-103	88.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1	[more]
A0A0A0LVW5_CUCSA	9.5e-74	61.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1	[more]
A0A0D2QBT8_GOSRA	5.1e-67	57.35	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1	[more]
K4C9C2_SOLLC	3.6e-65	56.40	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A059AAQ1_EUCGR	3.6e-65	55.83	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00542 PE=4 SV=1	[more]

BLAST of CmaCh20G001510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44220.1	2.4e-60	52.17	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G22200.1	1.6e-56	50.72	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	4.7e-56	47.12	NDR1/HIN1-like 1	[more]
AT5G06330.1	5.9e-51	47.12	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G52470.1	3.8e-50	45.89	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CmaCh20G001510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097380\|ref\|XP_008449594.1\|	7.4e-104	89.10	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449444813\|ref\|XP_004140168.1\|	3.7e-103	88.68	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|449443654\|ref\|XP_004139592.1\|	1.4e-73	61.97	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659127309\|ref\|XP_008463636.1\|	1.2e-72	61.50	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|823230872\|ref\|XP_012448156.1\|	7.2e-67	57.35	PREDICTED: protein YLS9 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh20G001510.1	CmaCh20G001510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 77..180 score: 8.6
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 5..211 score: 4.1E
None	No IPR available	PANTHER	PTHR31415:SF2	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED	coord: 5..211 score: 4.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh20G001510	Cucsa.185870	Cucumber (Gy14) v1	cgycmaB0530
CmaCh20G001510	Cla008622	Watermelon (97103) v1	cmawmB531
CmaCh20G001510	Cla017636	Watermelon (97103) v1	cmawmB511
CmaCh20G001510	Csa6G425840	Cucumber (Chinese Long) v2	cmacuB562
CmaCh20G001510	MELO3C009532	Melon (DHL92) v3.5.1	cmameB519
CmaCh20G001510	MELO3C014516	Melon (DHL92) v3.5.1	cmameB521
CmaCh20G001510	ClCG02G022400	Watermelon (Charleston Gray)	cmawcgB489
CmaCh20G001510	CSPI06G23390	Wild cucumber (PI 183967)	cmacpiB569
CmaCh20G001510	CmoCh02G013490	Cucurbita moschata (Rifu)	cmacmoB555
CmaCh20G001510	Lsi03G018290	Bottle gourd (USVL1VR-Ls)	cmalsiB522
CmaCh20G001510	Lsi10G011400	Bottle gourd (USVL1VR-Ls)	cmalsiB500
CmaCh20G001510	Cp4.1LG05g04530	Cucurbita pepo (Zucchini)	cmacpeB586
CmaCh20G001510	Cp4.1LG08g09740	Cucurbita pepo (Zucchini)	cmacpeB592
CmaCh20G001510	MELO3C014516.2	Melon (DHL92) v3.6.1	cmamedB598
CmaCh20G001510	MELO3C009532.2	Melon (DHL92) v3.6.1	cmamedB595
CmaCh20G001510	CsaV3_6G038530	Cucumber (Chinese Long) v3	cmacucB0676
CmaCh20G001510	Cla97C02G048480	Watermelon (97103) v2	cmawmbB577
CmaCh20G001510	Cla97C10G201390	Watermelon (97103) v2	cmawmbB563
CmaCh20G001510	Bhi10G000143	Wax gourd	cmawgoB0693
CmaCh20G001510	CsGy6G022650	Cucumber (Gy14) v2	cgybcmaB799
CmaCh20G001510	CsGy3G033010	Cucumber (Gy14) v2	cgybcmaB390
CmaCh20G001510	CsGy1G014860	Cucumber (Gy14) v2	cgybcmaB119
CmaCh20G001510	Carg02653	Silver-seed gourd	carcmaB1267

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh20G001510	CmaCh14G003510	Cucurbita maxima (Rimu)	cmacmaB262
CmaCh20G001510	CmaCh02G013080	Cucurbita maxima (Rimu)	cmacmaB470

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh20G001510	Cucurbita pepo (Zucchini)	cmacpeB564
CmaCh20G001510	Cucurbita pepo (Zucchini)	cmacpeB572
CmaCh20G001510	Silver-seed gourd	carcmaB0345
CmaCh20G001510	Silver-seed gourd	carcmaB0575
CmaCh20G001510	Cucumber (Chinese Long) v3	cmacucB0658
CmaCh20G001510	Cucurbita maxima (Rimu)	cmacmaB491
CmaCh20G001510	Cucumber (Gy14) v1	cgycmaB0678
CmaCh20G001510	Cucurbita moschata (Rifu)	cmacmoB550
CmaCh20G001510	Cucurbita moschata (Rifu)	cmacmoB570
CmaCh20G001510	Wild cucumber (PI 183967)	cmacpiB553
CmaCh20G001510	Cucumber (Chinese Long) v2	cmacuB548
CmaCh20G001510	Watermelon (Charleston Gray)	cmawcgB475