CmaCh20G001180 (gene) Cucurbita maxima (Rimu)

NameCmaCh20G001180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRPM1-interacting protein 4 (RIN4) family protein, putative
LocationCma_Chr20 : 542133 .. 544241 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAGGAATTGGTTTTAGTCCAATTTGGAAGTCCCTATTTTTGAAGTTTAAGGAGAAGGAAACTCTTTATTTGAAGATTTCTTGCATTTATTTTCTATTCGGTGCTACAGTTCTCCCACCCCCATCCTCCCCTCTTCAGGCCGTATGGATTCTCGTACGGAGGTAATGCGATAATATGTTCTTCCATTCATTTAGTTCAGATAATCACATCAGTTTCTTTCGATTTCCATCCTTTGTTTTGAAAAAACGAATTCATCGTTGTTTAGATTATGGTTTTCGTTGAATCTTGTTGAATCTTGGCCTTTCTTGTTTCGAAAATTTATTGTCTTAATTTAAGAGAATCGTTGCATTTCATTCTCGATTCCTGAGCAAAAGATCACCGTAATGGATACAAAACAATCAAGATCGCTAAAAATCGTGAGATGTGGAAGAGAAATATGATGAATCTATTTGAATATGAAACTGAAAGTTTGGTTGGTGTGTCTGTGTGTGTGTTTATACAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCCAATAAGAAACAGCAAAAGACCGATTTGACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCACCACCGTCGCGAACACCGACATCAACATCACCACCACCGCCACCACCCGCATCATGGTCAATTACCAGCGGATGGCGCTGTTGTCGGGGTAAGCACTTCTAATCGCTGAGTTATGTTCACTTTGATCTGTTCTTTTCCCACTTTAACCTCAAAATCCGATTGACCTAATTTGAACAAGAATTTAGTGTAGTTTTTGTTTGTGTAATCCAGCAGAAGAAAAAGAAGATTCTGTCCTGCATGAGTTGTTGTATCAAGCCTTGATATGAGATAAAGAAGGCAATCAACTTCGCTATGTTTTAGTGATATCATGCTGTTTTTCTGGATCTTCTTTGGCATGTGTAAATGTAGCGAGACATGTTCATCGTATGGAAAATAAATGCGTCAATTTCCCCTCCCTGAGTCTTTTTGTATAGGTTCTTTAGCTTATAAAACATGGAACCTTGTAATATATTCATTTCTTCATGGAGAAAACCAGATGAATACACTATGCAATAACATTATATTTTGTTCTTTTCGAAGTTGCTTTGGATCTACAGGGTGGACACAGCCCTTGCAATCTCTGATATTCTGTACATGTCAACTTTCCACCATTTGTTCAACCAGTTTCCACAGTCTATTTCTATGATAATTGAAGCTTTTTTAAGTTATAACATTTCTTTGTGTAATGTAGGCTAGTCTATGTCTATGCAACACGAACACCGACACAAACTCAACACACACAACACGGGCACGATGACGAACTCGAACTCAACACATGTAACACGGGCACGAACACGAACTCAACACACGTAACACGGATACAAACGACATGGGGCGCGGACAGTGAAGAATCTGGAGGGTGGCTGCAACCATGGGACGCGGACCATAAATGGGCTTCGATTAAATGGGTCGGTTCTGGGTTCATTATGAAAAACCCATAAAAGTAGAAATAAAAAAGTACGAAGAACCCAAAAAAAATCCATCCCGCCCTCTCTCTCTTCTCCTTCTCCTCGCCTCACGTATACAGCCGCCAGTCCTCCTCCATCTTCGGCGATCCTCCAGCGACAGACCCACGCTACTCTCTGGCGCCAACAGTGAACAGCGCAGCTCCGACCAGCAATCGCCGCTTCACCTACACGATCGACGACTGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGTGCAACATCCTCCAGCACCGACAGCACGAGCTGCTCCACATTTGGAATTCTTCGGAGGACTAATCGTACTTAGATTTGAAGGCGAAGTTGGGTAAGAACTAGTTGGTAACACTACTGATTATCTTGTGTTAAATTAAGTTTCAGGATTTGTTTTATTGAAGTCGTTAATTTATGGAGATTTTTAGAAAAATATAGGATTTTCGAATCTCATTAGGAAACGTCTCTAG

mRNA sequence

TAAAGGAATTGGTTTTAGTCCAATTTGGAAGTCCCTATTTTTGAAGTTTAAGGAGAAGGAAACTCTTTATTTGAAGATTTCTTGCATTTATTTTCTATTCGGTGCTACAGTTCTCCCACCCCCATCCTCCCCTCTTCAGGCCGTATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCCAATAAGAAACAGCAAAAGACCGATTTGACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCACCACCGTCGCGAACACCGACATCAACATCACCACCACCGCCACCACCCGCATCATGGTCAATTACCAGCGGATGGCGCTGTTGTCGGGTCCTCCTCCATCTTCGGCGATCCTCCAGCGACAGACCCACGCTACTCTCTGGCGCCAACAGTGAACAGCGCAGCTCCGACCAGCAATCGCCGCTTCACCTACACGATCGACGACTGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGTGCAACATCCTCCAGCACCGACAGCACGAGCTGCTCCACATTTGGAATTCTTCGGAGGACTAATCGTACTTAGATTTGAAGGCGAAGTTGGGAAACGTCTCTAG

Coding sequence (CDS)

ATGGATTCTCGTACGGAGAATAGGTGGAAATCCGTTCCAGAATTTGGGGGGTGGGATAATAATACGCCTGATGCAAGCAATTATTCCGTTGTATTTTCTCGAGCTCGTGCCAATAAGAAACAGCAAAAGACCGATTTGACTGAGTTCAAAAGAGCCAGCCTAGGGAATGAAAAGGAGTTAATGGCCATCGCGGATAAACATGATCGCCACCACCAGCATCACCACCGTCGCGAACACCGACATCAACATCACCACCACCGCCACCACCCGCATCATGGTCAATTACCAGCGGATGGCGCTGTTGTCGGGTCCTCCTCCATCTTCGGCGATCCTCCAGCGACAGACCCACGCTACTCTCTGGCGCCAACAGTGAACAGCGCAGCTCCGACCAGCAATCGCCGCTTCACCTACACGATCGACGACTGTTTGCTCCTCTTCACCCTCGCAGACGGCGACCCACTGCGCACGACGGTGCAACATCCTCCAGCACCGACAGCACGAGCTGCTCCACATTTGGAATTCTTCGGAGGACTAATCGTACTTAGATTTGAAGGCGAAGTTGGGAAACGTCTCTAG

Protein sequence

MDSRTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRHHQHHHRREHRHQHHHHRHHPHHGQLPADGAVVGSSSIFGDPPATDPRYSLAPTVNSAAPTSNRRFTYTIDDCLLLFTLADGDPLRTTVQHPPAPTARAAPHLEFFGGLIVLRFEGEVGKRL
BLAST of CmaCh20G001180 vs. TrEMBL
Match: A0A0A0KK09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.3e-25
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 1

Query: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63
           +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64

Query: 64  ADKHDRHHQH-HHRREHRHQHHH-----------HRHHPHHGQLPADGAVVG 104
            DKH RH +H HHR  HRH HHH           H HH HH Q P     VG
Sbjct: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVG 116

BLAST of CmaCh20G001180 vs. TrEMBL
Match: M5X647_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027227mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 6  ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65
          +N  +SVP+FGGWD N PD +NY+VVF++ARAN+KQ KTDLTEFKR SLGNE+E +A   
Sbjct: 1  KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAHS 60

Query: 66 KHDRHHQ 73
          +H  H Q
Sbjct: 61 QHGHHQQ 67

BLAST of CmaCh20G001180 vs. TrEMBL
Match: W9RB51_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001258 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.9e-12
Identity = 36/52 (69.23%), Postives = 49/52 (94.23%), Query Frame = 1

Query: 11 SVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMA 63
          SVP+FGGW++ +P  ++YS+VFSRARAN+KQ+KTDL+EFKR+SLGNE+EL+A
Sbjct: 2  SVPQFGGWEHKSPGRTDYSMVFSRARANRKQKKTDLSEFKRSSLGNERELIA 53

BLAST of CmaCh20G001180 vs. TrEMBL
Match: I1MDY4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G055400 PE=4 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1

Query: 11 SVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRH 70
          SVP+FGGWD   P A++YS+VF++ARANKKQQKT+LTE K  SLGNE+++     KH + 
Sbjct: 3  SVPQFGGWDQKAPGATDYSMVFTQARANKKQQKTNLTEIKHRSLGNERDIANA--KHGKA 62

Query: 71 HQHHHRREHRHQH 84
          H HHH   H H H
Sbjct: 63 HHHHHVHGHSHAH 73

BLAST of CmaCh20G001180 vs. TrEMBL
Match: K7M9T1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G055400 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 1

Query: 11 SVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIADKHDRH 70
          SVP+FGGWD   P A++YS+VF++ARANKKQQKT+LTE K  SLGNE+++     KH + 
Sbjct: 12 SVPQFGGWDQKAPGATDYSMVFTQARANKKQQKTNLTEIKHRSLGNERDIANA--KHGKA 71

Query: 71 HQHHHRREHRHQH 84
          H HHH   H H H
Sbjct: 72 HHHHHVHGHSHAH 82

BLAST of CmaCh20G001180 vs. TAIR10
Match: AT5G19473.1 (AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 67.8 bits (164), Expect = 8.4e-12
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1

Query: 1  MDSRTENR-WKSVPEFGGWDNNTP-DASNYSVVFSRARANKKQQKTDLTEFKRASLGNEK 60
          MD R EN  W  VP+FGGWD   P DA+NYSVVFS+ARAN+KQ K  +   + +SLG+E+
Sbjct: 1  MDKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQ 60

Query: 61 ELMAIADKHDRHHQHHHRRE 79
          ELM    ++  H Q HHR E
Sbjct: 61 ELMVSVRRN--HQQLHHRHE 75

BLAST of CmaCh20G001180 vs. NCBI nr
Match: gi|778716881|ref|XP_011657609.1| (PREDICTED: protein catecholamines up [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 1

Query: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63
           +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64

Query: 64  ADKHDRHHQH-HHRREHRHQHHH-----------HRHHPHHGQLPADGAVVG 104
            DKH RH +H HHR  HRH HHH           H HH HH Q P     VG
Sbjct: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVG 116

BLAST of CmaCh20G001180 vs. NCBI nr
Match: gi|659097471|ref|XP_008449644.1| (PREDICTED: forkhead box protein G1 isoform X2 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 1.8e-24
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 1

Query: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63
           +  NRW+SVPEFGGWD+N P ASNYSVVF+RARA++KQQKTDLTEFK+ SLGNE+ELM  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64

Query: 64  ADK---HDRHHQHHHRREHRHQH-HHHRHHPHHGQLPADGAV 102
            DK   H +H  H HR  HRH+H H H HH HH Q P D +V
Sbjct: 65  MDKSHCHQKHRHHRHRHRHRHEHQHRHHHHQHHHQPPPDDSV 106

BLAST of CmaCh20G001180 vs. NCBI nr
Match: gi|659097469|ref|XP_008449643.1| (PREDICTED: uncharacterized protein LOC103491464 isoform X1 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-24
Identity = 76/142 (53.52%), Postives = 88/142 (61.97%), Query Frame = 1

Query: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63
           +  NRW+SVPEFGGWD+N P ASNYSVVF+RARA++KQQKTDLTEFK+ SLGNE+ELM  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64

Query: 64  ADK---HDRHHQHHHRREHRHQH-HHHRHHPHHGQLPADGAVVGSSSIFGDPPATDPRYS 123
            DK   H +H  H HR  HRH+H H H HH HH Q P D +V          P +   YS
Sbjct: 65  MDKSHCHQKHRHHRHRHRHRHEHQHRHHHHQHHHQPPPDDSV---------GPVSTFVYS 124

Query: 124 LAPTVN------SAAPTSNRRF 136
           L  T N      S  P  N  F
Sbjct: 125 LLSTKNRGKEDLSLRPQENNYF 137

BLAST of CmaCh20G001180 vs. NCBI nr
Match: gi|595886818|ref|XP_007213346.1| (hypothetical protein PRUPE_ppa027227mg, partial [Prunus persica])

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-14
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 6  ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65
          +N  +SVP+FGGWD N PD +NY+VVF++ARAN+KQ KTDLTEFKR SLGNE+E +A   
Sbjct: 1  KNARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAHS 60

Query: 66 KHDRHHQ 73
          +H  H Q
Sbjct: 61 QHGHHQQ 67

BLAST of CmaCh20G001180 vs. NCBI nr
Match: gi|645241848|ref|XP_008227272.1| (PREDICTED: uncharacterized protein LOC103326806 [Prunus mume])

HSP 1 Score: 87.0 bits (214), Expect = 3.8e-14
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 6  ENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAIAD 65
          +N  +SVP+FGGWD N PD +NY+VVF++ARAN+KQ KTDLTEFKR SLGNE+E +A   
Sbjct: 7  KNVRRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAAHS 66

Query: 66 KHDRHHQ 73
          +H  H Q
Sbjct: 67 QHGHHQQ 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KK09_CUCSA3.3e-2561.61Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430670 PE=4 SV=1[more]
M5X647_PRUPE1.5e-1462.69Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027227mg PE=4 S... [more]
W9RB51_9ROSA1.9e-1269.23Uncharacterized protein OS=Morus notabilis GN=L484_001258 PE=4 SV=1[more]
I1MDY4_SOYBN2.1e-1157.53Uncharacterized protein OS=Glycine max GN=GLYMA_15G055400 PE=4 SV=2[more]
K7M9T1_SOYBN2.1e-1157.53Uncharacterized protein OS=Glycine max GN=GLYMA_15G055400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G19473.18.4e-1253.75 RPM1-interacting protein 4 (RIN4) family protein[more]
Match NameE-valueIdentityDescription
gi|778716881|ref|XP_011657609.1|4.8e-2561.61PREDICTED: protein catecholamines up [Cucumis sativus][more]
gi|659097471|ref|XP_008449644.1|1.8e-2464.71PREDICTED: forkhead box protein G1 isoform X2 [Cucumis melo][more]
gi|659097469|ref|XP_008449643.1|3.1e-2453.52PREDICTED: uncharacterized protein LOC103491464 isoform X1 [Cucumis melo][more]
gi|595886818|ref|XP_007213346.1|2.2e-1462.69hypothetical protein PRUPE_ppa027227mg, partial [Prunus persica][more]
gi|645241848|ref|XP_008227272.1|3.8e-1462.69PREDICTED: uncharacterized protein LOC103326806 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G001180.1CmaCh20G001180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 10..40
score: 4.
NoneNo IPR availablePANTHERPTHR33882FAMILY NOT NAMEDcoord: 1..85
score: 1.4
NoneNo IPR availablePANTHERPTHR33882:SF3RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEINcoord: 1..85
score: 1.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G001180CmaCh02G012830Cucurbita maxima (Rimu)cmacmaB470
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G001180Cucurbita pepo (Zucchini)cmacpeB586
CmaCh20G001180Cucumber (Gy14) v2cgybcmaB799
CmaCh20G001180Melon (DHL92) v3.6.1cmamedB595
CmaCh20G001180Melon (DHL92) v3.6.1cmamedB598
CmaCh20G001180Watermelon (97103) v2cmawmbB577
CmaCh20G001180Cucumber (Gy14) v1cgycmaB0166
CmaCh20G001180Melon (DHL92) v3.5.1cmameB521
CmaCh20G001180Watermelon (Charleston Gray)cmawcgB489
CmaCh20G001180Watermelon (97103) v1cmawmB531