CmaCh02G012830 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G012830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RPM1-interacting protein 4 (RIN4) family protein, putative
Location	Cma_Chr02 : 7525941 .. 7527457 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAGGTCTTCCACCTTCCCCTCTCCTCTTGAGACTCCATGGATACTCGAGCGGAGGTCAGCATTTCAAACTCTTTTCTCGCTCGAATCTTTCTCTCTCTCTAAATATTCTTTAAAAATAAAATAAAAATTATCTTCTGATTCAAATTTTTGATCTTCCATTCTATTTTTTTTAAAAGTTTTTATTGTTTAGATTACGCTTTTGAATCTTCTCATTTTAATTCATGTACTTTTGAATCTTGTAAAGGTTTATAAGCTACTTTGGAGTAAGAACTCAACAAAATATTGAATGAAAAATCATTGTAGTAATGGTCGAACATCATAACGATGAACACTTACTTTGATTAAGTCTAAAAATAACGATATGCAAATAGGTAACTTTTCATCCAATGTTGTAAGCTTTTTTATACCATGGTAGTTTCAATACATCTACGAAGGACATATTTGTAAGTGATCTTGAAATGATTGAGATCCTCTTTACACTACTAAAAATATGTTTAAAAGAATGTTTCCGAGTAATTTTGAGTACAACAAAGTTATTTTCACCATTAATAAGAGAAACAAATTTAAAGTATTTTATAAGATCCCACATCAGTGGGAGAAAAGATAATTTCTTACGAGAGTGTAGAAACCTCTCCCTAAAAGACGCATTTTAAAATTATGAAGGTAACGACATTACATAACGAGTTAAAGCAGACAATATCTACTAACGGTGGACTTGGACGGTTACAATTCTTTCTATAACGACCAATTTTTTTCCTTTTTTTTTTCCTTTTTTACCCTTTTTTTACCGTAATTCAAGAGAATCCTTGTATTTTATTAGAAAAAAGCACCAAAATGGATACAAATCAATCAAAATCACAAATTAAAAAGCTGAAAGTTTTGTTGGTGTGTGTGCGTACAGAAAAACAATAGGTGGAAATCTGTACCAGAGTTTGGAGGGTGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCTAGCCTTGGAAATGAGAGGGAGATGATGGCAATGACAGATAAACATCTTCGCCAACAGAACCACCACCACCATCGCCACCACCGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCGGTAAGCACTTTCATATGCTGCATCGCCTGTTCTTTTCCTACCTTAATCTCTAAAACAGATCTTTAGCTGACTAATACAAACTTTAACTCAATCAAGCAAAGCTAAATTGAACAATAAATTGCATACATACATCTAATCCTTGCTCTTTTATTTCTCTTATTCAGCAGAAGAAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGCGACAAAGGCGACCCACTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAG

mRNA sequence

TTGCAGGTCTTCCACCTTCCCCTCTCCTCTTGAGACTCCATGGATACTCGAGCGGAGAAAAACAATAGGTGGAAATCTGTACCAGAGTTTGGAGGGTGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCTAGCCTTGGAAATGAGAGGGAGATGATGGCAATGACAGATAAACATCTTCGCCAACAGAACCACCACCACCATCGCCACCACCGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCGGCCTTGATATGCGACAAAGGCGACCCACTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAG

Coding sequence (CDS)

ATGGATACTCGAGCGGAGAAAAACAATAGGTGGAAATCTGTACCAGAGTTTGGAGGGTGGGATCACAACGCACCTGGGGCAAGCAATTATTCTGTTGTATTCTCTCAAGCTCGTGCAAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAGCTAGCCTTGGAAATGAGAGGGAGATGATGGCAATGACAGATAAACATCTTCGCCAACAGAACCACCACCACCATCGCCACCACCGCCACCACAGCCACCACAGCCGCTATGAACACCACCCACAATATCAACATCGTCTTCGCCCCCACCAGCACGACCCTGTTGTCCCGGCCTTGATATGCGACAAAGGCGACCCACTCCTCTATGTTTTAGTCAAATCACGCTGTTTATCTGAATCTTTTTTCCCTGGCATGAAAATGTAG

Protein sequence

MDTRAEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMTDKHLRQQNHHHHRHHRHHSHHSRYEHHPQYQHRLRPHQHDPVVPALICDKGDPLLYVLVKSRCLSESFFPGMKM

Homology

[Close]

BLAST of CmaCh02G012830 vs. TrEMBL
Match: A0A0A0KK09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-28
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1


Query: 6   EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAM 65
           ++NNRW+SVPEFGGWDHNAPGASNYSVVF+QARA+RKQQKTDLTEFK+ SLGNE+E+M  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64

Query: 66  TDKHLRQQNHHHHRHHRHHSHHSRYEHHPQYQHRLRPHQH 106
            DKH R Q H HHRH   H HH  ++H   ++H+   HQH
Sbjct: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQH 104

[Close]

BLAST of CmaCh02G012830 vs. TrEMBL
Match: W9RB51_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001258 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 38/52 (73.08%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 13 SVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMA 65
          SVP+FGGW+H +PG ++YS+VFS+ARANRKQ+KTDL+EFKR+SLGNERE++A
Sbjct: 2  SVPQFGGWEHKSPGRTDYSMVFSRARANRKQKKTDLSEFKRSSLGNERELIA 53

[Close]

BLAST of CmaCh02G012830 vs. TrEMBL
Match: M5X647_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027227mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 44/74 (59.46%), Postives = 52/74 (70.27%), Query Frame = 1


Query: 9  NRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAMTDK 68
          N  +SVP+FGGWD N P  +NY+VVF+QARANRKQ KTDLTEFKR SLGNE+E +A    
Sbjct: 2  NARRSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQEFLAA--- 61

Query: 69 HLRQQNHHHHRHHR 83
                H  H HH+
Sbjct: 62 ------HSQHGHHQ 66

[Close]

BLAST of CmaCh02G012830 vs. TrEMBL
Match: A0A061GUM2_THECC (RPM1-interacting protein 4 (RIN4) family protein, putative OS=Theobroma cacao GN=TCM_040899 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-12
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 7  KNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMA 65
          +NN W SVP+FGGWD   PGA++YS+VFS+ARANRKQQKTD+    R SLGNE+E +A
Sbjct: 6  ENNAWMSVPQFGGWDQKGPGATDYSMVFSRARANRKQQKTDI----RRSLGNEQEFVA 59

[Close]

BLAST of CmaCh02G012830 vs. TrEMBL
Match: A0A0D2MS34_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G015000 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-12
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 1  MDTRAEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNER 60
          M T   +N +W SVPEFGGWD   PGA+NYS+VFSQARANRKQQK+D+      +LGN R
Sbjct: 1  MTTNKNENKKWMSVPEFGGWDKQPPGATNYSMVFSQARANRKQQKSDVFR----NLGNHR 60

Query: 61 EMMA 65
          +  A
Sbjct: 61 DFTA 60

[Close]

BLAST of CmaCh02G012830 vs. TAIR10
Match: AT5G19473.1 (AT5G19473.1 RPM1-interacting protein 4 (RIN4) family protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.7e-10
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1


Query: 1  MDTRAEKNNRWKSVPEFGGWDHNAPG-ASNYSVVFSQARANRKQQKTDLTEFKRASLGNE 60
          MD R E N  W  VP+FGGWD   P  A+NYSVVFS+ARANRKQ K  +   + +SLG+E
Sbjct: 1  MDKRRE-NAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSE 60

Query: 61 REMMAMTDKHLRQQNHHHHRHHRHHS 86
          +E+M         + +H   HHRH +
Sbjct: 61 QELMVSV------RRNHQQLHHRHET 76

[Close]

BLAST of CmaCh02G012830 vs. NCBI nr
Match: gi|778716881|ref|XP_011657609.1| (PREDICTED: protein catecholamines up [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-28
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = 1


Query: 6   EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAM 65
           ++NNRW+SVPEFGGWDHNAPGASNYSVVF+QARA+RKQQKTDLTEFK+ SLGNE+E+M  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64

Query: 66  TDKHLRQQNHHHHRHHRHHSHHSRYEHHPQYQHRLRPHQH 106
            DKH R Q H HHRH   H HH  ++H   ++H+   HQH
Sbjct: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQH 104

[Close]

BLAST of CmaCh02G012830 vs. NCBI nr
Match: gi|659097471|ref|XP_008449644.1| (PREDICTED: forkhead box protein G1 isoform X2 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 1


Query: 6   EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAM 65
           ++NNRW+SVPEFGGWDHNAPGASNYSVVF++ARA+RKQQKTDLTEFK+ SLGNERE+M  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64

Query: 66  TDKHLRQQNHHHHRHHRHHSHHSRYEHHPQYQHRLRPHQHDPVVP 111
            DK    Q H HHRH   H H  ++ HH  +QH  +P   D V P
Sbjct: 65  MDKSHCHQKHRHHRHRHRHRHEHQHRHH-HHQHHHQPPPDDSVGP 108

[Close]

BLAST of CmaCh02G012830 vs. NCBI nr
Match: gi|659097469|ref|XP_008449643.1| (PREDICTED: uncharacterized protein LOC103491464 isoform X1 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-24
Identity = 67/105 (63.81%), Postives = 79/105 (75.24%), Query Frame = 1


Query: 6   EKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMAM 65
           ++NNRW+SVPEFGGWDHNAPGASNYSVVF++ARA+RKQQKTDLTEFK+ SLGNERE+M  
Sbjct: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTRARADRKQQKTDLTEFKKTSLGNERELMEA 64

Query: 66  TDKHLRQQNHHHHRHHRHHSHHSRYEHHPQYQHRLRPHQHDPVVP 111
            DK    Q H HHRH   H H  ++ HH  +QH  +P   D V P
Sbjct: 65  MDKSHCHQKHRHHRHRHRHRHEHQHRHH-HHQHHHQPPPDDSVGP 108

[Close]

BLAST of CmaCh02G012830 vs. NCBI nr
Match: gi|703111238|ref|XP_010099807.1| (hypothetical protein L484_004382 [Morus notabilis])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 38/52 (73.08%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 13 SVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNEREMMA 65
          SVP+FGGW+H +PG ++YS+VFS+ARANRKQ+KTDL+EFKR+SLGNERE++A
Sbjct: 2  SVPQFGGWEHKSPGRTDYSMVFSRARANRKQKKTDLSEFKRSSLGNERELIA 53

[Close]

BLAST of CmaCh02G012830 vs. NCBI nr
Match: gi|645241848|ref|XP_008227272.1| (PREDICTED: uncharacterized protein LOC103326806 [Prunus mume])

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-13
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MDTRAEKNNRWKSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRASLGNER 60
          M  R EKN R +SVP+FGGWD N P  +NY+VVF+QARANRKQ KTDLTEFKR SLGNE+
Sbjct: 1  MGHREEKNVR-RSVPQFGGWDQNGPDPTNYTVVFTQARANRKQNKTDLTEFKRNSLGNEQ 60

Query: 61 EMMAMTDKHLRQQNHHHHRHHR 83
          E +A          H  H HH+
Sbjct: 61 EFLAA---------HSQHGHHQ 72

The following BLAST results are available for this feature:

BLAST of CmaCh02G012830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G012830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK09_CUCSA	4.0e-28	67.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G430670 PE=4 SV=1	[more]
W9RB51_9ROSA	3.3e-14	73.08	Uncharacterized protein OS=Morus notabilis GN=L484_001258 PE=4 SV=1	[more]
M5X647_PRUPE	1.8e-12	59.46	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa027227mg PE=4 S...	[more]
A0A061GUM2_THECC	3.1e-12	65.52	RPM1-interacting protein 4 (RIN4) family protein, putative OS=Theobroma cacao GN...	[more]
A0A0D2MS34_GOSRA	6.9e-12	59.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G015000 PE=4 SV=1	[more]

BLAST of CmaCh02G012830 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G19473.1	5.7e-10	47.67	RPM1-interacting protein 4 (RIN4) family protein	[more]

BLAST of CmaCh02G012830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778716881\|ref\|XP_011657609.1\|	5.7e-28	67.00	PREDICTED: protein catecholamines up [Cucumis sativus]	[more]
gi\|659097471\|ref\|XP_008449644.1\|	1.0e-24	63.81	PREDICTED: forkhead box protein G1 isoform X2 [Cucumis melo]	[more]
gi\|659097469\|ref\|XP_008449643.1\|	1.0e-24	63.81	PREDICTED: uncharacterized protein LOC103491464 isoform X1 [Cucumis melo]	[more]
gi\|703111238\|ref\|XP_010099807.1\|	4.7e-14	73.08	hypothetical protein L484_004382 [Morus notabilis]	[more]
gi\|645241848\|ref\|XP_008227272.1\|	1.8e-13	59.76	PREDICTED: uncharacterized protein LOC103326806 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G012830.1	CmaCh02G012830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 12..42 score: 1.
None	No IPR available	PANTHER	PTHR33882	FAMILY NOT NAMED	coord: 1..87 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G012830	Csa6G430670	Cucumber (Chinese Long) v2	cmacuB630
CmaCh02G012830	CSPI06G23780	Wild cucumber (PI 183967)	cmacpiB635
CmaCh02G012830	CmoCh20G001260	Cucurbita moschata (Rifu)	cmacmoB607
CmaCh02G012830	CmoCh02G013250	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G012830	Lsi10G011000	Bottle gourd (USVL1VR-Ls)	cmalsiB540
CmaCh02G012830	Cp4.1LG16g08620	Cucurbita pepo (Zucchini)	cmacpeB627
CmaCh02G012830	CsaV3_6G038900	Cucumber (Chinese Long) v3	cmacucB0752
CmaCh02G012830	Bhi10G000189	Wax gourd	cmawgoB0757
CmaCh02G012830	Carg06872	Silver-seed gourd	carcmaB0733
CmaCh02G012830	Carg02681	Silver-seed gourd	carcmaB1268

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh02G012830	CmaCh20G001180	Cucurbita maxima (Rimu)	cmacmaB470

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G012830	Cucumber (Chinese Long) v3	cmacucB0691
CmaCh02G012830	Watermelon (97103) v2	cmawmbB629
CmaCh02G012830	Cucurbita maxima (Rimu)	cmacmaB112
CmaCh02G012830	Cucurbita maxima (Rimu)	cmacmaB159
CmaCh02G012830	Cucumber (Gy14) v1	cgycmaB0167
CmaCh02G012830	Cucurbita moschata (Rifu)	cmacmoB573
CmaCh02G012830	Cucurbita moschata (Rifu)	cmacmoB574
CmaCh02G012830	Melon (DHL92) v3.5.1	cmameB572
CmaCh02G012830	Watermelon (Charleston Gray)	cmawcgB541
CmaCh02G012830	Watermelon (97103) v1	cmawmB592
CmaCh02G012830	Cucurbita pepo (Zucchini)	cmacpeB632
CmaCh02G012830	Cucurbita pepo (Zucchini)	cmacpeB643
CmaCh02G012830	Cucurbita pepo (Zucchini)	cmacpeB646
CmaCh02G012830	Bottle gourd (USVL1VR-Ls)	cmalsiB574
CmaCh02G012830	Cucumber (Gy14) v2	cgybcmaB120
CmaCh02G012830	Cucumber (Gy14) v2	cgybcmaB819
CmaCh02G012830	Melon (DHL92) v3.6.1	cmamedB654