CmaCh19G010890 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G010890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLOB domain-containing protein, putative
LocationCma_Chr19 : 9065665 .. 9066177 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTGCAACGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGCTCAACACTGCGTTTTTGCTCCTTATTTCCCTGCCCATCACCCCCATAAATGCTCCAGTGTTCACGAGGTGTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGTTCCACCCCATTTCTCTTCCTCATTTCATTCATTAGAGAAATTACGATGAATAATTGAACTGTAAACGCAGGAGTTGGGAGAGCATCAACGGAGCGATGCTGTGAGTTGGATGGTGTATGAGGCTAATGCAAGGATTCGAGATCAGGTTAACGGGTGCGTGGGAACGATAGCGTGTCTGCAGCGGCAAGTGGATGCGTTGCAACAGAAATTGGCCATCACACAAGCCCAGCTACTTCAATTGAAAATGGCCCAATTTTCTTCAGCAAAATCATCATCCGTAGGTAACCTCCTTCTTCCTCCTCTACCCAATATCAATATCAATGTGGGCGCATCCCCATCCTTATGGTCTTGCTAG

mRNA sequence

ATGGGAGCTGCAACGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGCTCAACACTGCGTTTTTGCTCCTTATTTCCCTGCCCATCACCCCCATAAATGCTCCAGTGTTCACGAGGTGTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGGGAGAGCATCAACGGAGCGATGCTGTGAGTTGGATGGTGTATGAGGCTAATGCAAGGATTCGAGATCAGGTTAACGGGTGCGTGGGAACGATAGCGTGTCTGCAGCGGCAAGTGGATGCGTTGCAACAGAAATTGGCCATCACACAAGCCCAGCTACTTCAATTGAAAATGGCCCAATTTTCTTCAGCAAAATCATCATCCGTAGGTAACCTCCTTCTTCCTCCTCTACCCAATATCAATATCAATGTGGGCGCATCCCCATCCTTATGGTCTTGCTAG

Coding sequence (CDS)

ATGGGAGCTGCAACGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGTGCTCAACACTGCGTTTTTGCTCCTTATTTCCCTGCCCATCACCCCCATAAATGCTCCAGTGTTCACGAGGTGTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGGGAGAGCATCAACGGAGCGATGCTGTGAGTTGGATGGTGTATGAGGCTAATGCAAGGATTCGAGATCAGGTTAACGGGTGCGTGGGAACGATAGCGTGTCTGCAGCGGCAAGTGGATGCGTTGCAACAGAAATTGGCCATCACACAAGCCCAGCTACTTCAATTGAAAATGGCCCAATTTTCTTCAGCAAAATCATCATCCGTAGGTAACCTCCTTCTTCCTCCTCTACCCAATATCAATATCAATGTGGGCGCATCCCCATCCTTATGGTCTTGCTAG

Protein sequence

MGAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSDAVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSSVGNLLLPPLPNININVGASPSLWSC
Homology
[Close]
BLAST of CmaCh19G010890 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.1e-37
Identity = 80/131 (61.07%), Postives = 101/131 (77.10%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GAA+PCAACKLLRRRCAQ CVF+PYFPA  P K ++VH VFGASNV+K+LQEL  HQR D
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+D LQ +LA+ QA+++ L++ Q     ++ 
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ----STNF 128

Query: 122 VGNLLLPPLPN 133
            G+ L P  P+
Sbjct: 129 PGHGLCPDSPS 135

[Close]
BLAST of CmaCh19G010890 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-33
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 4   ATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSDAV 63
           ++PCA+CKLLRRRCA+ C+FAPYFP   PHK + VH+VFGASNVSK+LQEL  HQR+DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 64  SWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKM 112
           + +V+EANAR+RD V GCVG I+ LQ QV  LQ +LA+ QA++L ++M
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 113

[Close]
BLAST of CmaCh19G010890 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 6.8e-32
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1 

Query: 1   MGAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRS 60
           +   TPCAACKLLRRRCAQ C F+PYF  H PHK +SVH+VFGASNVSK+L E+ E QR+
Sbjct: 40  LNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRA 99

Query: 61  DAVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSS 120
           DA + +VYEAN R+RD V GC+G I+ LQ+QV ALQ +L   ++++L+ K  +       
Sbjct: 100 DAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE------- 159

Query: 121 SVGNLLLP 129
           +V  L++P
Sbjct: 160 AVATLIVP 160

[Close]
BLAST of CmaCh19G010890 vs. Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-31
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1 

Query: 5   TPCAACKLLRRRCAQH-CVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSDAV 64
           +PCA CKLLRR+C +  CVFAPYFPA  P+K + VH++FGASNV+K+LQEL E+ RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 65  SWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLK 111
             MVYEANARI+D V GCVGTI+ L RQ++ LQ +LA  QA+L+ ++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]
BLAST of CmaCh19G010890 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 2.2e-30
Identity = 62/119 (52.10%), Postives = 86/119 (72.27%), Query Frame = 1 

Query: 1   MGAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRS 60
           +   TPCAACKLLRRRCA+ C F+PYF  H PHK ++VH+VFGASNVSK+L E+GE QR 
Sbjct: 47  LNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRG 106

Query: 61  DAVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKS 120
           DA + +VYEAN R+RD + GC+G I+ LQ  + +LQ +L   + ++L+ K  + ++  S
Sbjct: 107 DAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITS 165

[Close]
BLAST of CmaCh19G010890 vs. TrEMBL
Match: A0A0A0K5P4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237840 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.1e-52
Identity = 114/146 (78.08%), Postives = 125/146 (85.62%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GAA PCAACKLLRRRCA  CVFAPYFPA HPHK SSVH+VFGASNVSKLLQEL E QRSD
Sbjct: 19  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 78

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQF-SSAKSS 121
           AVS MVYEANARIRD V GCVG I+CLQ+QVDALQQ+LAITQAQL+Q+KM QF ++++SS
Sbjct: 79  AVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQAQLVQMKMGQFTTTSQSS 138

Query: 122 SVGNLLLPPLPNININVGASPSLWSC 147
           S  + LLPP P  NINV AS SLWSC
Sbjct: 139 SSTDDLLPPPP--NINVAASSSLWSC 162

[Close]
BLAST of CmaCh19G010890 vs. TrEMBL
Match: A5BKW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01120 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 85/119 (71.43%), Postives = 104/119 (87.39%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRCAQ CVFAPYFPA  PHK +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+DALQ +LA+ QA+++Q++M QF+S+ S+
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFTSSTSN 127

[Close]
BLAST of CmaCh19G010890 vs. TrEMBL
Match: A0A067JQI0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22638 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.8e-40
Identity = 89/145 (61.38%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRC+Q CVFAPYFPA  P K +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GALSPCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+D+LQ +LAI QA+++ ++M+Q+ S+ + S
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAEVVHMRMSQYGSSSTPS 128

Query: 122 VGNLLLPPLPNININVGASPSLWSC 147
             ++++        NVG   SLWSC
Sbjct: 129 SLDMVVD-----QANVG--ESLWSC 146

[Close]
BLAST of CmaCh19G010890 vs. TrEMBL
Match: B9RI26_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1575710 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.1e-40
Identity = 89/145 (61.38%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRCAQ CVFAPYFPA  P K +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+D+LQ +LAI QA+++ ++M QF ++ S+ 
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAEVVHMRMRQFGTSSSNP 128

Query: 122 VGNLLLPPLPNININVGASPSLWSC 147
               ++    N      A  SLWSC
Sbjct: 129 SAMDMVVDQAN------AGESLWSC 147

[Close]
BLAST of CmaCh19G010890 vs. TrEMBL
Match: M5WHZ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012253mg PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-39
Identity = 84/120 (70.00%), Postives = 103/120 (85.83%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRCAQ CVFAPYFPA  P K +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GAMSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+DALQ +LAI QA+++ ++M QFS++ ++S
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAIAQAEVVHMRMGQFSTSSTTS 128

[Close]
BLAST of CmaCh19G010890 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-38
Identity = 80/131 (61.07%), Postives = 101/131 (77.10%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GAA+PCAACKLLRRRCAQ CVF+PYFPA  P K ++VH VFGASNV+K+LQEL  HQR D
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+D LQ +LA+ QA+++ L++ Q     ++ 
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ----STNF 128

Query: 122 VGNLLLPPLPN 133
            G+ L P  P+
Sbjct: 129 PGHGLCPDSPS 135

[Close]
BLAST of CmaCh19G010890 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-34
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 4   ATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSDAV 63
           ++PCA+CKLLRRRCA+ C+FAPYFP   PHK + VH+VFGASNVSK+LQEL  HQR+DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 64  SWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKM 112
           + +V+EANAR+RD V GCVG I+ LQ QV  LQ +LA+ QA++L ++M
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQM 113

[Close]
BLAST of CmaCh19G010890 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 138.3 bits (347), Expect = 3.9e-33
Identity = 69/128 (53.91%), Postives = 92/128 (71.88%), Query Frame = 1 

Query: 1   MGAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRS 60
           +   TPCAACKLLRRRCAQ C F+PYF  H PHK +SVH+VFGASNVSK+L E+ E QR+
Sbjct: 40  LNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRA 99

Query: 61  DAVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSS 120
           DA + +VYEAN R+RD V GC+G I+ LQ+QV ALQ +L   ++++L+ K  +       
Sbjct: 100 DAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQRE------- 159

Query: 121 SVGNLLLP 129
           +V  L++P
Sbjct: 160 AVATLIVP 160

[Close]
BLAST of CmaCh19G010890 vs. TAIR10
Match: AT1G16530.1 (AT1G16530.1 ASYMMETRIC LEAVES 2-like 9)

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-32
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1 

Query: 5   TPCAACKLLRRRCAQH-CVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSDAV 64
           +PCA CKLLRR+C +  CVFAPYFPA  P+K + VH++FGASNV+K+LQEL E+ RSDAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 65  SWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLK 111
             MVYEANARI+D V GCVGTI+ L RQ++ LQ +LA  QA+L+ ++
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]
BLAST of CmaCh19G010890 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 62/119 (52.10%), Postives = 86/119 (72.27%), Query Frame = 1 

Query: 1   MGAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRS 60
           +   TPCAACKLLRRRCA+ C F+PYF  H PHK ++VH+VFGASNVSK+L E+GE QR 
Sbjct: 47  LNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRG 106

Query: 61  DAVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKS 120
           DA + +VYEAN R+RD + GC+G I+ LQ  + +LQ +L   + ++L+ K  + ++  S
Sbjct: 107 DAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITS 165

[Close]
BLAST of CmaCh19G010890 vs. NCBI nr
Match: gi|449444128|ref|XP_004139827.1| (PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus])

HSP 1 Score: 212.2 bits (539), Expect = 6.0e-52
Identity = 114/146 (78.08%), Postives = 125/146 (85.62%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GAA PCAACKLLRRRCA  CVFAPYFPA HPHK SSVH+VFGASNVSKLLQEL E QRSD
Sbjct: 19  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 78

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQF-SSAKSS 121
           AVS MVYEANARIRD V GCVG I+CLQ+QVDALQQ+LAITQAQL+Q+KM QF ++++SS
Sbjct: 79  AVSSMVYEANARIRDPVYGCVGAISCLQQQVDALQQQLAITQAQLVQMKMGQFTTTSQSS 138

Query: 122 SVGNLLLPPLPNININVGASPSLWSC 147
           S  + LLPP P  NINV AS SLWSC
Sbjct: 139 SSTDDLLPPPP--NINVAASSSLWSC 162

[Close]
BLAST of CmaCh19G010890 vs. NCBI nr
Match: gi|659092567|ref|XP_008447124.1| (PREDICTED: LOB domain-containing protein 4-like [Cucumis melo])

HSP 1 Score: 212.2 bits (539), Expect = 6.0e-52
Identity = 115/147 (78.23%), Postives = 122/147 (82.99%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GAA PCAACKLLRRRCA  CVFAPYFPA HPHK SSVH+VFGASNVSKLLQEL E QRSD
Sbjct: 17  GAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSD 76

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQF--SSAKS 121
           AVS MVYEANARIRD V GCVGTI+CLQ+QVDALQQ+LAITQAQL+QLKM QF  +S  S
Sbjct: 77  AVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFTTTSQSS 136

Query: 122 SSVGNLLLPPLPNININVGASPSLWSC 147
           SS  + L PP    NINV AS SLWSC
Sbjct: 137 SSTDDFLSPP---PNINVAASSSLWSC 160

[Close]
BLAST of CmaCh19G010890 vs. NCBI nr
Match: gi|359494441|ref|XP_002264049.2| (PREDICTED: LOB domain-containing protein 4 [Vitis vinifera])

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 85/119 (71.43%), Postives = 104/119 (87.39%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRCAQ CVFAPYFPA  PHK +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GAVSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+DALQ +LA+ QA+++Q++M QF+S+ S+
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALVQAEVVQMRMNQFTSSTSN 127

[Close]
BLAST of CmaCh19G010890 vs. NCBI nr
Match: gi|802743022|ref|XP_012087393.1| (PREDICTED: LOB domain-containing protein 4 [Jatropha curcas])

HSP 1 Score: 172.2 bits (435), Expect = 6.8e-40
Identity = 89/145 (61.38%), Postives = 114/145 (78.62%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRC+Q CVFAPYFPA  P K +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GALSPCAACKLLRRRCSQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+D+LQ +LAI QA+++ ++M+Q+ S+ + S
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAEVVHMRMSQYGSSSTPS 128

Query: 122 VGNLLLPPLPNININVGASPSLWSC 147
             ++++        NVG   SLWSC
Sbjct: 129 SLDMVVD-----QANVG--ESLWSC 146

[Close]
BLAST of CmaCh19G010890 vs. NCBI nr
Match: gi|255544668|ref|XP_002513395.1| (PREDICTED: LOB domain-containing protein 4 [Ricinus communis])

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 89/145 (61.38%), Postives = 110/145 (75.86%), Query Frame = 1 

Query: 2   GAATPCAACKLLRRRCAQHCVFAPYFPAHHPHKCSSVHEVFGASNVSKLLQELGEHQRSD 61
           GA +PCAACKLLRRRCAQ CVFAPYFPA  P K +SVH+VFGASNV+K+LQEL EHQRSD
Sbjct: 9   GALSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSD 68

Query: 62  AVSWMVYEANARIRDQVNGCVGTIACLQRQVDALQQKLAITQAQLLQLKMAQFSSAKSSS 121
           AVS MVYEANAR+RD V GCVG I+ LQ+Q+D+LQ +LAI QA+++ ++M QF ++ S+ 
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLAIAQAEVVHMRMRQFGTSSSNP 128

Query: 122 VGNLLLPPLPNININVGASPSLWSC 147
               ++    N      A  SLWSC
Sbjct: 129 SAMDMVVDQAN------AGESLWSC 147

The following BLAST results are available for this feature:
BLAST of CmaCh19G010890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD4_ARATH7.1e-3761.07LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD12_ARATH2.1e-3363.89LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD15_ARATH6.8e-3253.91LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
LBD3_ARATH3.4e-3162.62LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1[more]
LBD13_ARATH2.2e-3052.10LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2[more]
BLAST of CmaCh19G010890 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5P4_CUCSA4.1e-5278.08Uncharacterized protein OS=Cucumis sativus GN=Csa_7G237840 PE=4 SV=1[more]
A5BKW9_VITVI1.6e-4071.43Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0027g01120 PE=4 SV=... [more]
A0A067JQI0_JATCU4.8e-4061.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22638 PE=4 SV=1[more]
B9RI26_RICCO8.1e-4061.38LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1575710 PE=4... [more]
M5WHZ5_PRUPE1.4e-3970.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012253mg PE=4 SV=1[more]
BLAST of CmaCh19G010890 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G31320.14.0e-3861.07 LOB domain-containing protein 4[more]
AT2G30130.11.2e-3463.89 Lateral organ boundaries (LOB) domain family protein[more]
AT2G40470.13.9e-3353.91 LOB domain-containing protein 15[more]
AT1G16530.11.9e-3262.62 ASYMMETRIC LEAVES 2-like 9[more]
AT2G30340.11.2e-3152.10 LOB domain-containing protein 13[more]
BLAST of CmaCh19G010890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444128|ref|XP_004139827.1|6.0e-5278.08PREDICTED: LOB domain-containing protein 4-like [Cucumis sativus][more]
gi|659092567|ref|XP_008447124.1|6.0e-5278.23PREDICTED: LOB domain-containing protein 4-like [Cucumis melo][more]
gi|359494441|ref|XP_002264049.2|2.3e-4071.43PREDICTED: LOB domain-containing protein 4 [Vitis vinifera][more]
gi|802743022|ref|XP_012087393.1|6.8e-4061.38PREDICTED: LOB domain-containing protein 4 [Jatropha curcas][more]
gi|255544668|ref|XP_002513395.1|1.2e-3961.38PREDICTED: LOB domain-containing protein 4 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044036 cell wall macromolecule metabolic process
biological_process GO:0010089 xylem development
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G010890.1CmaCh19G010890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 6..103
score: 4.0
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 5..106
score: 24
NoneNo IPR availableunknownCoilCoilcoord: 85..112
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 1..122
score: 6.9
NoneNo IPR availablePANTHERPTHR31301:SF7LOB DOMAIN-CONTAINING PROTEIN 3coord: 1..122
score: 6.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G010890Cucsa.239660Cucumber (Gy14) v1cgycmaB0667
CmaCh19G010890Cla005507Watermelon (97103) v1cmawmB470
CmaCh19G010890Csa7G237840Cucumber (Chinese Long) v2cmacuB529
CmaCh19G010890MELO3C012624Melon (DHL92) v3.5.1cmameB464
CmaCh19G010890ClCG09G022590Watermelon (Charleston Gray)cmawcgB439
CmaCh19G010890CSPI07G10760Wild cucumber (PI 183967)cmacpiB535
CmaCh19G010890CmoCh11G020550Cucurbita moschata (Rifu)cmacmoB492
CmaCh19G010890Lsi10G015250Bottle gourd (USVL1VR-Ls)cmalsiB471
CmaCh19G010890Lsi11G016180Bottle gourd (USVL1VR-Ls)cmalsiB474
CmaCh19G010890Cp4.1LG04g02270Cucurbita pepo (Zucchini)cmacpeB537
CmaCh19G010890MELO3C012624.2Melon (DHL92) v3.6.1cmamedB537
CmaCh19G010890CsaV3_6G013670Cucumber (Chinese Long) v3cmacucB0633
CmaCh19G010890CsaV3_7G022740Cucumber (Chinese Long) v3cmacucB0640
CmaCh19G010890Cla97C02G044430Watermelon (97103) v2cmawmbB528
CmaCh19G010890Cla97C09G184130Watermelon (97103) v2cmawmbB547
CmaCh19G010890Bhi10G000748Wax gourdcmawgoB0666
CmaCh19G010890Bhi05G001748Wax gourdcmawgoB0654
CmaCh19G010890CsGy6G011360Cucumber (Gy14) v2cgybcmaB783
CmaCh19G010890CsGy7G010110Cucumber (Gy14) v2cgybcmaB946
CmaCh19G010890Carg15667Silver-seed gourdcarcmaB0745
CmaCh19G010890Carg04675Silver-seed gourdcarcmaB0547
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G010890Cucurbita maxima (Rimu)cmacmaB148
CmaCh19G010890Cucurbita maxima (Rimu)cmacmaB442
CmaCh19G010890Cucurbita maxima (Rimu)cmacmaB454
CmaCh19G010890Cucumber (Gy14) v1cgycmaB0298
CmaCh19G010890Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G010890Cucurbita moschata (Rifu)cmacmoB514
CmaCh19G010890Cucurbita moschata (Rifu)cmacmoB526
CmaCh19G010890Wild cucumber (PI 183967)cmacpiB528
CmaCh19G010890Cucumber (Chinese Long) v2cmacuB522
CmaCh19G010890Melon (DHL92) v3.5.1cmameB452
CmaCh19G010890Watermelon (Charleston Gray)cmawcgB458
CmaCh19G010890Watermelon (97103) v1cmawmB500
CmaCh19G010890Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G010890Cucurbita pepo (Zucchini)cmacpeB527
CmaCh19G010890Cucurbita pepo (Zucchini)cmacpeB546
CmaCh19G010890Melon (DHL92) v3.6.1cmamedB522
CmaCh19G010890Silver-seed gourdcarcmaB0039
CmaCh19G010890Silver-seed gourdcarcmaB0471