CmaCh19G004680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G004680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ring finger protein, putative
Location	Cma_Chr19 : 5612484 .. 5619942 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCCTCTCTTCCAGAAAGCTTCTCTCCGACGACTCCGACGACGACCTCAACAAATTCTGCCCTGAAGACTGCTTCGATCACCCTTCCGATTCCTGCTTCTCCGATTGCCTCGAAAAATGCCCTACACTCTGTTCTTACATCTCTATTTCAATCCCGCCGCCCGATTTTGACAATTTCAATCCCTCCTCCGCCGCCAAATCACCGCATAAACTCTCCAATTTGGTTACCTTAACCATCGCTCTCCTCTCTTTTACCTTCCTCCTCGTCCTCTGCTACGCCGTCTACGCTCGTTTCTACTCCGCCCGCCGTAGACAGATCCGCCGCCTCGATTCCCCACCGCCCCCAACCCATCACCACCACCACCACAGCCCTGTTTTGGATCACCCCATTTGGTATATCCGTACCATCGGCCTCCCGCCGGCTGTTATCGACGCCATCGCCGTCTGCAAATTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTCGAAGAGGATGAAACTTTAAGGCTCTTGCCAAAATGTAGCCACGCTTTTCATCTCCCCTGTATCGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCTCTCCCGTCGTAGCTCACTCCGCGCCACCGACACCGACACCACCTCCGGCCGAAACCCAGATGGCGAATTTACAGGAGGAAGAAGAAAACGGCGCCAATTCAGGGGAAAGTTCCATGAGAAACGAAGAACAGGATGAAATCCATTTAGAAAGTGACAATCAGGCGATGAGAAGATCCGTGTCTTTAGATTTGCCCTCTGCTCTTCGAATCAGCTCTGTTCTTGCTGTTGTTAATGAAAAAATGGATTGGGAAGGTGAATCGGAGCAGAGAAATGGGAATTGCTCGGAGAAATCAGAGGGGAGTATGAACAGGTCAGTTTCTTGCAGTGGGGGGTTTCTGATGAGAAGCTCCAATCATAGTTGATATCCATTTTTGTGAGGCGTCTCTGAAGATGGGGATGTCCATGGGAACTCTTGGAAAGCTGAGAGGTCTCTAAGTTCATAATGTTTATTGTGAAGTTTGTGAAAATGGCTGCCCAGATTACATGAATATCATGAACATTAAGAAGAACTTAACTAAGATGATATCTGTTGTTTGGTGAGTGGGTGAGTGAGTGAGAGAGTGAGGAAATCTGGGTATGAACTCAAGAAATTTTCCAATAATTTTAGGATGATATCAAATGTTTGTTTATCCATGATGATGATTATAATGCCTTGTCTTTCTCCACAAAGTGGCTAATAAAATTGTGTTGATAGTAAAGTTCATATTCAGTTACCGCATGAATGAATCAAAATCATATCTGAGAGCGGTTTTGAAGATAACTTAATCACTAATGTGTTTATAAGACAAAACGATTAATTCATTTCATAACTAAAAGTTAGAGATTAAATTGTTACGGTAGATATTGTCCTCTTTATGCTTCATTTTTTCGAGTTTCCCCTCAAAAGTTTTTAAATGAGTATGATTTTTTTGAGTTTCCTCCTTCTTCTACCGACGTAGGATCTCACAATTCACCTCGGGATCAGCGTATTCAATCGATGTCTTTCTCCCTATCAATTGACGTGGGATCTCACAAATTTGGTCCACCAAACTTAGAGTTACCTAGAGTGTGCTAAAATATTGTATTCTTTATTTGGCTTACATACATACTTTATACAACACAGTGACTCATTCTTCAAATAGGCATGCATTAGAGTCAATTTGGTATGGTATAACAGTTTTTACGAACGAGCCTCTAGAATCACCCAACCTATATAAACAAGGGACGTGGACTCGAAAGCCGATCCAATATTTACAGTTCCAATTCTTGTGAGTGTGAACGTCTGCGAAGTGAGGAGTAGTGTTTCCTCCCCTTGCTTCAAAGCTTACGATTTCATGTTTTATTTCACTAATCGATGAGTTTCTTTTTACCATTCCCTCACGATATAACTTTTCTTCTATTGAGGTCTCATTGGATCCAACAATGAGGAGCCGAGATTTATGGTAGATTCATATGACTATATGGAATGGTACAAGATCTAGAGTCCTATGACATTCTTACAAAAAGAAAATGTCGCTGGTAGATTGCTGTTTTGTTATTGTAGAAAGCAAGTTCTCGTCACACTTTTTGATTCACGGTTTGATGTTATGGATTCCTCGTCTAAGGGGTAATGATCATCCTAGAATTTACGTGGGAGACTTTAACGGGCACTCTAAGTGTGAAAGCTCATATCCGATGGAGAAGAAAATAAAGTATTCCTTGTAAGAGTATGAAAATCTTTTCCTAAAAGACACGTGTTAGAGCTATTTCTTAAGAATACATAATTTAATAACTCTCTACGACTATTGCCTCCCAAGTGTTCAAAAGCCTACAAACTCGTGGCAGATTCGATAATCAGCTAAACGGAGATCGGGTCACCAAGTGAAGGATCCATTTCCATGGCTTCTCGCTCTCTCTTCCTCTCCTTAAATCGGTAAGTATGGCTGTTCTTAATTTCAATGCAATTTCGTTCTTTCTTCGTTATTTGAGGATTTGTGTAAATCGATCTGAACCCTAGAAAATTCAGGAATAGAGGCTTCTTAAATCAAAGTTTCAAAGCGATCCCGGTCTTCAATGAAGCCAGTGTTTCGAACTATTGCTCTCATGGAGCACTGAGGAGTGAATCGCTTGATGAATCAGTGAATTCTGAAGAAACCAATGACTTGAAGAGCAGAATATTTCGGCTCAGACTTCCCAAGCGAAGTGCTATCAACGTTATTCAGAGATGGACGAGTGAGGGCAATCAAGTTACGATCACTGAGCTTCGGAACATCTCCAAAGAACTCAGAAGGCTTCAGCGGTATAAGCACGCTCTTGAGGTATTAGTTTATCTGTTTTCTTCTTGCTTCTTACAGTATTCTGTTATCAGATGATAAATGGCAGTAATAAAATGAAAGAGAAAATTTTTCTGTGGTTCTTTAAGTGTTGTTGTGGCAACTCTCAACGAAATCAAATCAAATGTGCGCTCCTACCCCTATGTAAATAAACACGAAGATAAGTGGAAGTGGACAAATGCTTCGAAATTTTCAGCTAAATAAAAAATGCTGGAGTTAAGTGTAAGCTGTCTTCTGTGTAAAATTTAACTTATCTTATGTACTTGTGAGATCCCACATCGGTTGGAGAGAGGAGAGAGGGACGAAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAGTAGACGCGTTTTAAAAACTTTGAGGGAAAGCCCGAAAGGGAAAGCCCAAGAAGGACATCTGCTAGGGGTGAGCTTGGGTCGTTACAAATGGTATTAGAGGCAGACACTGGGCGGTGTGCTAACGAGGACATTGAGTCTTGAAGGGGGTGGACACCAGGCAATGTGTCAATGCGGACGTTGGGCTCTAGGGGGTAGATGGTGAGATCGCATATCAATTTAAGAGAGAACGAGTACCAACGAGGATGCTGGTTCCCGAAGGGGGGTGAATTGTGAGATCCTATATTGGTTGGAGAGAGGAACAAATCCCTAGTAGACACGTTACCTCTCCCTAGAAGACGTGTTTTAAAGTTTTGAGGAGAAACCTGAAAGGGAAATCTCAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGCCGTTACAGAACTTGTCGTCTGTATAAACACGGTTGAGGAAGTTTGTATATGTAATTCTTAGTTATAGTCTAGTTGGTTAAGTCTTCGAGAGTGAAGTATACTCTCTAACCTTATTTTTAATATTAAAACAAGAAGATTTGTATGTCTGCGAACCAAAATGTTTGTGCCTTCCAATCAAACATTTTGGAGTTCGATACAAACTATACAAATACTCGTATAATTTGCACAAGCACCCTTTGTTAGGTGGTTCTTTTTGCTCAAAAAAACCTTTAGCCTTCAGTGTTGTTCCAAGACAACTGAAGATGTCTTGAAACAGGTCATGCATGGAAGTTCTTTTAGCGAATAGAAAGAAATAAAGGAACTATTTTGTCGGACCAATGCTTTGTCGAAATCGACAATTTTGGGTGAGGGTAGCTGTATTAACTTCTACTTGAACCCGTCTTCGTAATTATTATTATTTGTTCTTTTTGATCGTGGCATTATCGGGTTGCTTTTATGTTAGCTTCTAGGGTATTTTGTAGTCTTTCATGCCTTTTGTATTATTTCATTATTAAGGAAAATTCATTTCTTCTTCTTCGTCTTATTTTTAAAATCACCTGTTGGTGTTTCTTTTCAACACACGGGTTTTGTTGATGAACATGAAGCCAAGGACAGGATGGTGGAAGAAAACACCTAGTTGATTGAGTGCAATAAGGATGCTTCTAAACTCACCCTTACTTTGTAGGCATTTGAGTTTCTCGTCAAATTGTCAAAGAAAGCATGAAATTGAAGGCAGAAAGATATGGCTTCAGATATATCTTTGAGGGAGAATCTGAGTAACCGTGTATATCATAAAAACTTTAAATGGTATTGAAAACTTGAGAATGATAGAATTGGAGCTGGTCCCTAACTTCGAATGGTTTAGCAGCTAGATAACCAGATGAAGGAGAAGAGGTTTATGCAATTTGCTTAGTTGGCATGCTTAGACAAGGCTTTATTTTACTCCTTCCCAAGAATGTCCAGAACTGAAAGAGCAAATTCCAGTACAAGGAGAGGGGTGGCCAATACGTTGTTGAACTGGCGTTGGTAACATGGGGCAAAATTATGAGCTGGTACAATATTGTGTGTGATCCCACGTCGTTTGGAGAGAGGAACGACATCAATTTGAGAGGGGAGTGAGTGCTAGCGAGGACACTGGGCCCAGATCCCACATCGGTTGGAGAGGAGAAGCAAACTTTCTTTACAAAGATGTGGAAACCTCTCCCTATCAGCTGCGTTTTAAAACTTTGAGGGAAAGCCCAAAGAAGAAAATATCTGCTAGTGGTGGGTTTAGGCTGTTACAAATTGTTTCAAAGTCAGACACCATGCGATGTGCCAGCGAGGAGGATGAGCCCCGAAGGGGGATGGACACTGGATGATGTGCCAGCGAGGATGCTGGCCCCCAAAAGGGGGTGAATTGTGAGATCCCACATTGATTGGAGAGGGAAACGAGTGCCAGCGAGAACGCTGGGCCCTGAAGGGGGGTGGAGTGTGAGATCTTACATCGGTTGGAGAGGAGAACGAAACATTATTTATAAGGGTGTGAAAACCTCTCCTTAGCAGACGTGTTTTAAAATTTTGAGAGAACGCCCAAAAAAGACAATATTTATTAATGGTGTGCTTGGGCTATTACAATTTCTATGGGACCATAGTTAATTTTAGAGGGAGTAGACACCAATGTGTTGATAGGCTTGGATATTTGCAGCAGTAAGTCTTAGTCTCAAAGTGATATGGCCCATATCTTGCCCTGCCGAAGTACCACTGTCTCAATCTTGCCCTTTATGCCACATATAGGGGAGAGAAATTCCACGACTGATATACTCAACAAATGTTTTGTAATGAGATAAATGCAAAAAGTATATTTCTGGTCCATATGAGAAAAAGTTCTCTTTGAGCTTTTTTTTTTCGGGCTTCCCCTCAAGGTTTTCAAAATGTGTCTATTAGAGAGAGGTTTTCACACCCTTATGAAAAATGCTTTGTTCTCCTCCCCAACTAGTGTGGGATCTCACAATCCACCCCCTTTCGGGACCCAGTGTTCTCGCTAGCACTCATTCCCTTCTGGGACCCAGCGTCCTTGTTGGCACACTGCCTCGTGTCCACACCCTTTCGGTGCTCAGCTTCCTCACTAGCACATTGCCAGGTGTCTGGCTCTAGTACCATGTGGAATGTCCCAAGCCCACTGCTAGTAGATATTGTCCTCTTTGGGCTTTCCCTTCCGGGCTTCCCCTCAAAGTTTTTAAAACATGTCTGCTTGGGAGAGGTTTTCACACCCTTATAAAGAATGCTTCGTTCGCCTCCCCAATCGATGTGGGATCTCAAAGTTCCTGTTTAGAGTCTTCCTTAATCCTTCAAGAACATAGCTCACATATTCCAAAAGTTCAATTAAATGGTTCAAGAATTTCATTGAATGTTCCTGTAAAGCATACACGGCTGCATAAAATTACTAATGATATAATTATATGCTCATATTCAAGAATAAGGGTTCAAGTTGCATTGTACTACAAGTGAAATTGAATTTTATGTCTGCTAAAATCTTCCTTATTTCTCATTTGTGAAAAGGGTAAGAAAATGGTTAGAAGAACACCGTCATTTTCTTTGGCTCATAATCTGTAAACACTGATCAGGGGCTTTTATGCCATCTTCTCTATTTACAATGAACTGACTATCTGTTTATCATACTTGCCTGCAGATTTTAGAATGGATGGTGTCTCATAATGAAAACGAGTTATCCGATTCTGACTTTGCAATCCGCATTGACTTGATGACGAAAGTTTTCGGCATCGATGCTGCTGAACGATACTTTGAAGGTCTGCCAATCGACGCCAAAACTTGTGAAACTTATACTTCTCTCCTTCACTCATTTTCGGGATCCAAATTGACTGAAAAGGCAGAAACTCTTTATGAAAAAATGAAGGAGTCAGGTATACCTCTCACTGCCCTTCCATTCAATGAGATGATGACTTTGTACACATCGGTCGGGCAAGTAGAAAAGGTATCCTCGATTGTCAACGACCTGAAACAAAGCAAGGTCCATTCTGACATTTTCACGTATAATCTTTGGATCAGCTCTCTAGCTGCAACTTTAAATATTGATGGCGTTAGACAGATTCTCGATGAGATGACTCGCAACCCCAATTCAAATGAAGTCTGGGTGCGATATATCAATCTCGTCAACATATACATTACATCAGCTCATCTATTGCATTCCGAGTCGAACTCCGTAGTCGAGTCTGAGAGTGGCATTACGCAACGAGAATGGATCACATACGACCTCCTCATTATCTTGTATGCTGGTATGGGAAACAAAGACAAAGTTGATGAGATTTGGAGATCATTAAGGATGACAAAGCAAAAAATGACGAGCAGAAACTACATTTGCATTCTATCTTGTTACCTGATGCTTGATCATTTGAAGGAAATTGGTGAAGTTATTGATCAATGGAAACAATCAAGTACTGGAGATTTTGATGTTTCTGCTTGTAACAGGCTTGTAAATGCGTTTGTTGAAGCTGGCTTCAAGGAGAAAGCCAACAGTTTTGTCACCATTTTGAAGAATTGTGAACCCACAGAAGCATAGCGGTAGGTTTAAATCTTAACTTAGTCTTATCTTGTTTTGAACCATCAGGTTTCAAATGTTGTCTCCTATGCTCTGAATTTTGAGTAAAAGATATTGTTTCTGTCATTATTATTTTGTTTTCACATTTTACTTGTGGGACCTGCCCGAACAGGGTGGGGATTCTGCGTTTAGACGGGGAATGGGAAGGGAGCGGAGGG

mRNA sequence

ATGGATTTCCTCTCTTCCAGAAAGCTTCTCTCCGACGACTCCGACGACGACCTCAACAAATTCTGCCCTGAAGACTGCTTCGATCACCCTTCCGATTCCTGCTTCTCCGATTGCCTCGAAAAATGCCCTACACTCTGTTCTTACATCTCTATTTCAATCCCGCCGCCCGATTTTGACAATTTCAATCCCTCCTCCGCCGCCAAATCACCGCATAAACTCTCCAATTTGGTTACCTTAACCATCGCTCTCCTCTCTTTTACCTTCCTCCTCGTCCTCTGCTACGCCGTCTACGCTCGTTTCTACTCCGCCCGCCGTAGACAGATCCGCCGCCTCGATTCCCCACCGCCCCCAACCCATCACCACCACCACCACAGCCCTGTTTTGGATCACCCCATTTGGTATATCCGTACCATCGGCCTCCCGCCGGCTGTTATCGACGCCATCGCCGTCTGCAAATTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTCGAAGAGGATGAAACTTTAAGGCTCTTGCCAAAATGTAGCCACGCTTTTCATCTCCCCTGTATCGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCTCTCCCGTCGTAGCTCACTCCGCGCCACCGACACCGACACCACCTCCGGCCGAAACCCAGATGGCGAATTTACAGGAGGAAGAAGAAAACGGCGCCAATTCAGGGGAAAGTTCCATGAGAAACGAAGAACAGGATGAAATCCATTTAGAAAGTGACAATCAGGCGATGAGAAGATCCGTGTCTTTAGATTTGCCCTCTGCTCTTCGAATCAGCTCTGTTCTTGCTGTTGTTAATGAAAAAATGGATTGGGAAGGTGAATCGGAGCAGAGAAATGGGAATTGCTCGGAGAAATCAGAGGGGAGTATGAACAGGAATAGAGGCTTCTTAAATCAAAGTTTCAAAGCGATCCCGGTCTTCAATGAAGCCAGTGTTTCGAACTATTGCTCTCATGGAGCACTGAGGAGTGAATCGCTTGATGAATCAGTGAATTCTGAAGAAACCAATGACTTGAAGAGCAGAATATTTCGGCTCAGACTTCCCAAGCGAAGTGCTATCAACGTTATTCAGAGATGGACGAGTGAGGGCAATCAAGTTACGATCACTGAGCTTCGGAACATCTCCAAAGAACTCAGAAGGCTTCAGCGGTATAAGCACGCTCTTGAGATTTTAGAATGGATGGTGTCTCATAATGAAAACGAGTTATCCGATTCTGACTTTGCAATCCGCATTGACTTGATGACGAAAGTTTTCGGCATCGATGCTGCTGAACGATACTTTGAAGGTCTGCCAATCGACGCCAAAACTTGTGAAACTTATACTTCTCTCCTTCACTCATTTTCGGGATCCAAATTGACTGAAAAGGCAGAAACTCTTTATGAAAAAATGAAGGAGTCAGGTATACCTCTCACTGCCCTTCCATTCAATGAGATGATGACTTTGTACACATCGGTCGGGCAAGTAGAAAAGGTATCCTCGATTGTCAACGACCTGAAACAAAGCAAGGTCCATTCTGACATTTTCACGTATAATCTTTGGATCAGCTCTCTAGCTGCAACTTTAAATATTGATGGCGTTAGACAGATTCTCGATGAGATGACTCGCAACCCCAATTCAAATGAAGTCTGGGTGCGATATATCAATCTCGTCAACATATACATTACATCAGCTCATCTATTGCATTCCGAGTCGAACTCCGTAGTCGAGTCTGAGAGTGGCATTACGCAACGAGAATGGATCACATACGACCTCCTCATTATCTTGTATGCTGGTATGGGAAACAAAGACAAAGTTGATGAGATTTGGAGATCATTAAGGATGACAAAGCAAAAAATGACGAGCAGAAACTACATTTGCATTCTATCTTGTTACCTGATGCTTGATCATTTGAAGGAAATTGGTGAAGTTATTGATCAATGGAAACAATCAAGTACTGGAGATTTTGATGTTTCTGCTTGTAACAGGCTTGTAAATGCGTTTGTTGAAGCTGGCTTCAAGGAGAAAGCCAACAGTTTTGTCACCATTTTGAAGAATTGTGAACCCACAGAAGCATAGCGGTAGGTTTAAATCTTAACTTAGTCTTATCTTGTTTTGAACCATCAGGTTTCAAATGTTGTCTCCTATGCTCTGAATTTTGAGTAAAAGATATTGTTTCTGTCATTATTATTTTGTTTTCACATTTTACTTGTGGGACCTGCCCGAACAGGGTGGGGATTCTGCGTTTAGACGGGGAATGGGAAGGGAGCGGAGGG

Coding sequence (CDS)

ATGGATTTCCTCTCTTCCAGAAAGCTTCTCTCCGACGACTCCGACGACGACCTCAACAAATTCTGCCCTGAAGACTGCTTCGATCACCCTTCCGATTCCTGCTTCTCCGATTGCCTCGAAAAATGCCCTACACTCTGTTCTTACATCTCTATTTCAATCCCGCCGCCCGATTTTGACAATTTCAATCCCTCCTCCGCCGCCAAATCACCGCATAAACTCTCCAATTTGGTTACCTTAACCATCGCTCTCCTCTCTTTTACCTTCCTCCTCGTCCTCTGCTACGCCGTCTACGCTCGTTTCTACTCCGCCCGCCGTAGACAGATCCGCCGCCTCGATTCCCCACCGCCCCCAACCCATCACCACCACCACCACAGCCCTGTTTTGGATCACCCCATTTGGTATATCCGTACCATCGGCCTCCCGCCGGCTGTTATCGACGCCATCGCCGTCTGCAAATTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTCGAAGAGGATGAAACTTTAAGGCTCTTGCCAAAATGTAGCCACGCTTTTCATCTCCCCTGTATCGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCTCTCCCGTCGTAGCTCACTCCGCGCCACCGACACCGACACCACCTCCGGCCGAAACCCAGATGGCGAATTTACAGGAGGAAGAAGAAAACGGCGCCAATTCAGGGGAAAGTTCCATGAGAAACGAAGAACAGGATGAAATCCATTTAGAAAGTGACAATCAGGCGATGAGAAGATCCGTGTCTTTAGATTTGCCCTCTGCTCTTCGAATCAGCTCTGTTCTTGCTGTTGTTAATGAAAAAATGGATTGGGAAGGTGAATCGGAGCAGAGAAATGGGAATTGCTCGGAGAAATCAGAGGGGAGTATGAACAGGAATAGAGGCTTCTTAAATCAAAGTTTCAAAGCGATCCCGGTCTTCAATGAAGCCAGTGTTTCGAACTATTGCTCTCATGGAGCACTGAGGAGTGAATCGCTTGATGAATCAGTGAATTCTGAAGAAACCAATGACTTGAAGAGCAGAATATTTCGGCTCAGACTTCCCAAGCGAAGTGCTATCAACGTTATTCAGAGATGGACGAGTGAGGGCAATCAAGTTACGATCACTGAGCTTCGGAACATCTCCAAAGAACTCAGAAGGCTTCAGCGGTATAAGCACGCTCTTGAGATTTTAGAATGGATGGTGTCTCATAATGAAAACGAGTTATCCGATTCTGACTTTGCAATCCGCATTGACTTGATGACGAAAGTTTTCGGCATCGATGCTGCTGAACGATACTTTGAAGGTCTGCCAATCGACGCCAAAACTTGTGAAACTTATACTTCTCTCCTTCACTCATTTTCGGGATCCAAATTGACTGAAAAGGCAGAAACTCTTTATGAAAAAATGAAGGAGTCAGGTATACCTCTCACTGCCCTTCCATTCAATGAGATGATGACTTTGTACACATCGGTCGGGCAAGTAGAAAAGGTATCCTCGATTGTCAACGACCTGAAACAAAGCAAGGTCCATTCTGACATTTTCACGTATAATCTTTGGATCAGCTCTCTAGCTGCAACTTTAAATATTGATGGCGTTAGACAGATTCTCGATGAGATGACTCGCAACCCCAATTCAAATGAAGTCTGGGTGCGATATATCAATCTCGTCAACATATACATTACATCAGCTCATCTATTGCATTCCGAGTCGAACTCCGTAGTCGAGTCTGAGAGTGGCATTACGCAACGAGAATGGATCACATACGACCTCCTCATTATCTTGTATGCTGGTATGGGAAACAAAGACAAAGTTGATGAGATTTGGAGATCATTAAGGATGACAAAGCAAAAAATGACGAGCAGAAACTACATTTGCATTCTATCTTGTTACCTGATGCTTGATCATTTGAAGGAAATTGGTGAAGTTATTGATCAATGGAAACAATCAAGTACTGGAGATTTTGATGTTTCTGCTTGTAACAGGCTTGTAAATGCGTTTGTTGAAGCTGGCTTCAAGGAGAAAGCCAACAGTTTTGTCACCATTTTGAAGAATTGTGAACCCACAGAAGCATAG

Protein sequence

MDFLSSRKLLSDDSDDDLNKFCPEDCFDHPSDSCFSDCLEKCPTLCSYISISIPPPDFDNFNPSSAAKSPHKLSNLVTLTIALLSFTFLLVLCYAVYARFYSARRRQIRRLDSPPPPTHHHHHHSPVLDHPIWYIRTIGLPPAVIDAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRSPVVAHSAPPTPTPPPAETQMANLQEEEENGANSGESSMRNEEQDEIHLESDNQAMRRSVSLDLPSALRISSVLAVVNEKMDWEGESEQRNGNCSEKSEGSMNRNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANSFVTILKNCEPTEA

Homology

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BLAST of CmaCh19G004680 vs. Swiss-Prot
Match: PP372_ARATH (Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.3e-120
Identity = 222/385 (57.66%), Postives = 290/385 (75.32%), Query Frame = 1


Query: 312 NRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSA 371
           N G L  +F      +  S S Y +  A+ +  ++ES   EE +DLKSRIFRLRLPKRSA
Sbjct: 16  NNGVLGSNFIRNAESSRFSKS-YNADAAIGNSLVEES---EEKDDLKSRIFRLRLPKRSA 75

Query: 372 INVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRID 431
             V+++W  EGNQ+TI ELR ISKELRR +RYKHALE+ EWMV H E+++SD+D+A RID
Sbjct: 76  TTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRID 135

Query: 432 LMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKES-GIPLT 491
           L++KVFGIDAAERYFEGL ID+KT ETYTSLLH+++ SK TE+AE L++++ ES  +   
Sbjct: 136 LISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFG 195

Query: 492 ALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILD 551
           A+ +NEMMTLY SVGQVEKV  ++  LKQ KV  DIFTYNLW+SS AAT NID +R+IL+
Sbjct: 196 AITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILE 255

Query: 552 EMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAG 611
           EM  + +SNE WVRYI+L +IYI S+ + ++ES   VE+E  I+QREWITYD L+IL+ G
Sbjct: 256 EMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTG 315

Query: 612 MGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVS 671
           +GNK  +D+IW+SLR T Q ++SR+YIC+LS YLML HL+E  E+I QWK+S T +FD S
Sbjct: 316 LGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDAS 375

Query: 672 ACNRLVNAFVEAGFKEKANSFVTIL 696
           AC R++NAF + G +  A+ F  IL
Sbjct: 376 ACLRILNAFRDVGLEGIASGFHLIL 396

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BLAST of CmaCh19G004680 vs. Swiss-Prot
Match: PP302_ARATH (Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.8e-54
Identity = 116/326 (35.58%), Postives = 196/326 (60.12%), Query Frame = 1


Query: 347 ESVNSEET-----NDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQ 406
           ES N +ET     + L  R+  L   KRSA+  I++W  EG+ V   EL  I +ELR+++
Sbjct: 48  ESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIK 107

Query: 407 RYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTS 466
           RYKHALEI EWMV   + +L   D+A+ +DL++K+ G+++AE++FE +P   +     TS
Sbjct: 108 RYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTS 167

Query: 467 LLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSK 526
           LLHS+  +KL++KAE L+EKM E G   + LP+N M+++Y S GQ EKV  ++ +LK  +
Sbjct: 168 LLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELK-IR 227

Query: 527 VHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHS 586
              DI TYNLW+++ A+  +++G  ++  +  +    N  WV Y  L N+Y  + + +  
Sbjct: 228 TSPDIVTYNLWLTAFASGNDVEGAEKVYLK-AKEEKLNPDWVTYSVLTNLYAKTDN-VEK 287

Query: 587 ESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILS 646
              ++ E E  ++++  + Y  LI L+A +G+KD V+  W+ ++ + +KM    Y+ ++S
Sbjct: 288 ARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMIS 347

Query: 647 CYLMLDHLKEIGEVIDQWKQ-SSTGD 667
             + L   ++   + D+W+  S TGD
Sbjct: 348 AVVKLGEFEQAKGLYDEWESVSGTGD 370

[Close]

BLAST of CmaCh19G004680 vs. Swiss-Prot
Match: PP166_ARATH (Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 5.6e-47
Identity = 104/340 (30.59%), Postives = 183/340 (53.82%), Query Frame = 1


Query: 357 LKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSH 416
           L+ R+ R   P  S I V+  W  +GN V  +EL +I K LR+  R+ HAL+I +WM  H
Sbjct: 40  LQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEH 99

Query: 417 NENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAE 476
             +E+S+ D AIR+DL+ KV G+  AE++FE +P++ +    Y +LL+ ++  K+  KAE
Sbjct: 100 RVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAE 159

Query: 477 TLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSL 536
            ++++MKE G     LP+N M+ LY   G+   V  ++ +++   V  DIFT N  + + 
Sbjct: 160 QVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAY 219

Query: 537 AATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGI-TQ 596
           +   +++G+ + L     +   +  W  Y +  N YI  A L       + +SE  +  Q
Sbjct: 220 SVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYI-KAGLTEKALEMLRKSEQMVNAQ 279

Query: 597 REWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEV 656
           +    Y++L+  Y   G K++V  +W SL        +  YI ++S  L +D ++E+ ++
Sbjct: 280 KRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEVEKI 339

Query: 657 IDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANSFVTIL 696
           +++W ++    FD+   + L+  + + G  EKA   V IL
Sbjct: 340 MEEW-EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNIL 376

[Close]

BLAST of CmaCh19G004680 vs. Swiss-Prot
Match: PP400_ARATH (Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.8e-46
Identity = 114/341 (33.43%), Postives = 184/341 (53.96%), Query Frame = 1


Query: 355 NDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMV 414
           N LK  I R   P+RS  +++Q     G+ V+++ELR ISK L R  RY  AL+++EWM 
Sbjct: 39  NSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWME 98

Query: 415 SHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGL---PIDAKTCET-YTSLLHSFSGSK 474
           +  + E S  D A+R+DL+ K  G+   E YFE L    +  +  ++ Y  LL ++  +K
Sbjct: 99  NQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNK 158

Query: 475 LTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYN 534
           + ++AE L EK+   G  +T  PFNEMM LY + GQ EKV  +V+ +K +K+  ++ +YN
Sbjct: 159 MVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYN 218

Query: 535 LWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVE-S 594
           LW+++      +  V  +  EM  + +    W     L N+YI S      ++  V+E +
Sbjct: 219 LWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSG--FDEKARLVLEDA 278

Query: 595 ESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHL 654
           E  + +   + Y  LI LYA +GNK+ V  +W   +    +++  NYIC+LS  +    L
Sbjct: 279 EKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDL 338

Query: 655 KEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANS 691
           +E   V  +W ++   ++DV   N L+ A+V  G   KA S
Sbjct: 339 EEAERVFSEW-EAQCFNYDVRVSNVLLGAYVRNGEIRKAES 375

[Close]

BLAST of CmaCh19G004680 vs. Swiss-Prot
Match: PPR86_ARATH (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 4.7e-46
Identity = 110/301 (36.54%), Postives = 169/301 (56.15%), Query Frame = 1


Query: 389 ELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEG 448
           E+ +  K+LR    Y  AL++ E M     N+ + SD AI +DL+ K   I A E YF  
Sbjct: 57  EVGDTIKKLRNRGLYYPALKLSEVMEERGMNK-TVSDQAIHLDLVAKAREITAGENYFVD 116

Query: 449 LPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVE 508
           LP  +KT  TY SLL+ +    LTEKAE L  KMKE  I  +++ +N +MTLYT  G+ E
Sbjct: 117 LPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETE 176

Query: 509 KVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINL 568
           KV +++ +LK   V  D +TYN+W+ +LAAT +I GV ++++EM R+      W  Y N+
Sbjct: 177 KVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNM 236

Query: 569 VNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTK 628
            +IY+  A L      ++ E E   TQR++  Y  LI LY  +G   +V  IWRSLR+  
Sbjct: 237 ASIYV-DAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAI 296

Query: 629 QKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKA 688
            K ++  Y+ ++   + L+ L     +  +W Q++   +D+   N L+ A+ + G  +KA
Sbjct: 297 PKTSNVAYLNMIQVLVKLNDLPGAETLFKEW-QANCSTYDIRIVNVLIGAYAQEGLIQKA 354

Query: 689 N 690
           N
Sbjct: 357 N 354

[Close]

BLAST of CmaCh19G004680 vs. TrEMBL
Match: A0A0A0K649_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066290 PE=4 SV=1)

HSP 1 Score: 691.4 bits (1783), Expect = 1.1e-195
Identity = 342/395 (86.58%), Postives = 371/395 (93.92%), Query Frame = 1


Query: 311 RNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRS 370
           RNRGFLNQSFK+ PVFNEA+VSNYCSHGALRSES DESVN EE NDLKSRIF+LRLPKRS
Sbjct: 15  RNRGFLNQSFKSTPVFNEANVSNYCSHGALRSESFDESVNYEEFNDLKSRIFQLRLPKRS 74

Query: 371 AINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRI 430
           AI V++RWTSEGNQVTI ELRNISKELR++QRYKHALEILEWMVSHN++ELSDSDFAIRI
Sbjct: 75  AIRVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMVSHNQSELSDSDFAIRI 134

Query: 431 DLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLT 490
           DLMTKVFG+DAAERYFEGLPIDAKTCETYT+LLHSF+GSKLT+KAETLYEKMKES IPLT
Sbjct: 135 DLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKMKESDIPLT 194

Query: 491 ALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILD 550
           ALPFNEMMTLYTS+GQVEKVSSIV+DLKQ  VH DIFTYNLWISSLAA LNIDGV+QIL+
Sbjct: 195 ALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAALNIDGVKQILN 254

Query: 551 EMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAG 610
           EM  NPNSNE WVRYI LVNIY+ SA+LLHSESNSVVES SGI+QREWITYDLLIILYAG
Sbjct: 255 EMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGISQREWITYDLLIILYAG 314

Query: 611 MGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVS 670
           +GNKDK+D+IWRSLRMTKQKMTSRNYICI+SCYLMLD LKEIGEVIDQWKQS+T DFD+S
Sbjct: 315 LGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDFDIS 374

Query: 671 ACNRLVNAFVEAGFKEKANSFVTIL--KNCEPTEA 704
           +CNRLVNAF+EAG  EKANSFV +L  KNCEPTEA
Sbjct: 375 SCNRLVNAFIEAGLHEKANSFVNVLIQKNCEPTEA 409

[Close]

BLAST of CmaCh19G004680 vs. TrEMBL
Match: A0A067DHG1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015370mg PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 2.7e-141
Identity = 250/375 (66.67%), Postives = 309/375 (82.40%), Query Frame = 1


Query: 332 SNYCSHGALRSESLDESV-NSEETNDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITEL 391
           S + S G+ ++E LDE   NS+  +DLKSRIFR+ LPKRSA NVIQRW SEGNQ T++EL
Sbjct: 32  SRFLSSGSSQNECLDEETSNSDGKDDLKSRIFRISLPKRSATNVIQRWVSEGNQATVSEL 91

Query: 392 RNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGLP 451
           R+I KELR+ QRYKHALEI EWMV+H E  LSDSD+A RIDLMTKVFGI + ERYFEGLP
Sbjct: 92  RHILKELRKSQRYKHALEISEWMVTHKEFVLSDSDYATRIDLMTKVFGIHSGERYFEGLP 151

Query: 452 IDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKV 511
           + AKT ETYT+LLH ++G+K TEKAE L+E++K+S +   AL +NEMMTLY SVGQVEKV
Sbjct: 152 LSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 211

Query: 512 SSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVN 571
           + +V ++K+  V  DIFTYNLWISS AATLNID V++ LDEM+ +   ++ WV+Y+NLVN
Sbjct: 212 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 271

Query: 572 IYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQK 631
           IYIT++HL+++ES+++VE+E  ITQR+WITYD LIILYAG+GNKDK+D+IW+SLRMTKQK
Sbjct: 272 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 331

Query: 632 MTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANS 691
           MTSRNYICILS YLML HLKE+GE+IDQWKQS+T DFD+SACNRL+ AF + G  EKAN 
Sbjct: 332 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 391

Query: 692 FVTIL--KNCEPTEA 704
           F  +L  KNC PT A
Sbjct: 392 FHMLLLQKNCAPTNA 406

[Close]

BLAST of CmaCh19G004680 vs. TrEMBL
Match: A0A072VEC1_MEDTR (PPR containing plant protein OS=Medicago truncatula GN=MTR_1g022400 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.2e-136
Identity = 249/393 (63.36%), Postives = 308/393 (78.37%), Query Frame = 1


Query: 311 RNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEE-TNDLKSRIFRLRLPKR 370
           RN G ++ ++      N  S   + S+ A+ S+ ++E+ NS E  +DL+SRI RLRLPKR
Sbjct: 14  RNTGLISNNYH----HNHRSARFFTSN-AVTSDYVEETPNSSEGDDDLRSRILRLRLPKR 73

Query: 371 SAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIR 430
           SA NV+Q+W  +GN + ++ELR+ISKELR  QRYKHALEI EWMVSH E ELSDSD+A R
Sbjct: 74  SATNVLQKWVLQGNSIPVSELRDISKELRTSQRYKHALEISEWMVSHEEYELSDSDYADR 133

Query: 431 IDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPL 490
           IDLM KVFGIDAAERYFE LP+ AKTCETYT+LLHS++G+K+TEKAE LYE++K+S +P 
Sbjct: 134 IDLMNKVFGIDAAERYFEALPLSAKTCETYTALLHSYAGAKMTEKAEELYERIKDSNLPF 193

Query: 491 TALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQIL 550
            A+ +NEMMTLY SVGQVEK+ S+V DLKQ KV  DIFT+NLWISS AA+LNID VR+IL
Sbjct: 194 DAVTYNEMMTLYMSVGQVEKIPSVVEDLKQQKVVPDIFTFNLWISSCAASLNIDEVRRIL 253

Query: 551 DEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYA 610
           +EM     S+E W+RY+NL N+Y T+ HL  + SNS+VE+E GITQ +WITYDLL+ILYA
Sbjct: 254 EEMRNGAGSDESWIRYLNLANVYFTAGHLDSASSNSLVETEKGITQSQWITYDLLVILYA 313

Query: 611 GMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDV 670
           G+GNKDK+D+IW SLRMTKQKM SRNYICI+S YL+LDH KE GEVIDQWKQS+T DFDV
Sbjct: 314 GLGNKDKLDQIWNSLRMTKQKMISRNYICIISAYLILDHAKEAGEVIDQWKQSTTTDFDV 373

Query: 671 SACNRLVNAFVEAGFKEKANSFVTIL--KNCEP 701
             C R+++AF E G  E AN+   IL  KN  P
Sbjct: 374 LDCKRIMDAFTEIGLDEVANNLNMILIEKNLNP 401

[Close]

BLAST of CmaCh19G004680 vs. TrEMBL
Match: A0A0D2TVY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G057100 PE=4 SV=1)

HSP 1 Score: 493.4 bits (1269), Expect = 4.5e-136
Identity = 240/377 (63.66%), Postives = 309/377 (81.96%), Query Frame = 1


Query: 327 NEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSAINVIQRWTSEGNQVT 386
           ++  +S   S G++ +E  D+ +N+ ET+DL+SRIFRLRLPKRSA +VI++W  EGN+++
Sbjct: 15  SQRCMSRLLSSGSVSTEYTDDYINNSETDDLRSRIFRLRLPKRSATSVIEKWVGEGNRIS 74

Query: 387 ITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYF 446
           I++LR ISK+LR+ QR+KHALEI EWMVSH E +LSD+D+AIRIDLMTKVFGIDAAERYF
Sbjct: 75  ISDLRQISKDLRKSQRFKHALEISEWMVSHEEYKLSDTDYAIRIDLMTKVFGIDAAERYF 134

Query: 447 EGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQ 506
           E LP+ AKT ETYT+LLHS++ +KLTEKAE LYE++K S +  +AL +NE+MTLY SVGQ
Sbjct: 135 EDLPLTAKTSETYTALLHSYAAAKLTEKAEELYERIKGSKLSFSALLYNEIMTLYMSVGQ 194

Query: 507 VEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYI 566
           VEKVSS+V +LK+ KV  DIFTYNLWISS AA LNID V++IL+EM  +   N+ W RYI
Sbjct: 195 VEKVSSVVEELKRQKVEPDIFTYNLWISSCAAALNIDQVQRILNEMRCDSGCNDDWQRYI 254

Query: 567 NLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRM 626
           NLVNIY+T++ L  ++S S +E E GITQREWITYD L++LYAG+G+KDK+D+IW+SLRM
Sbjct: 255 NLVNIYVTASRLTSADSISPIEIEKGITQREWITYDFLVMLYAGLGDKDKIDQIWKSLRM 314

Query: 627 TKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKE 686
           TKQKMTSRNYICILS YL+L H+KE+GEV +QWKQS+T +FD+SACN +++AF +AG  E
Sbjct: 315 TKQKMTSRNYICILSSYLILGHMKEVGEVFNQWKQSTTTEFDISACNSVLSAFEDAGLME 374

Query: 687 KANS--FVTILKNCEPT 702
           KAN    + I  NC PT
Sbjct: 375 KANDLHMLLISGNCSPT 391

[Close]

BLAST of CmaCh19G004680 vs. TrEMBL
Match: A0A067KXR4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24946 PE=4 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 2.9e-135
Identity = 244/395 (61.77%), Postives = 315/395 (79.75%), Query Frame = 1


Query: 311 RNRGFLNQSFKAIPVFNEASVSNYCSHGALRSE-SLDES-VNSEETNDLKSRIFRLRLPK 370
           R +  +N    ++    + +   + S  ALR++ +L+ES     + +DL+SRIFRLRLPK
Sbjct: 13  RRKCRINSEIGSLYTLKKENFVRFVSSDALRNDVALEESNYKDNKEDDLRSRIFRLRLPK 72

Query: 371 RSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAI 430
           RSA N+IQ+W +EGN V ++ELR+ISKEL + QR+KHALEI EWMV+H EN LSDSD+A 
Sbjct: 73  RSATNIIQKWVNEGNTVALSELRSISKELSKSQRFKHALEISEWMVTHEENALSDSDYAN 132

Query: 431 RIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIP 490
           RIDLMTKVFGIDAAERYFEGLPI +KT ETYT+LLHS++ SKL +KAE LYE++K S + 
Sbjct: 133 RIDLMTKVFGIDAAERYFEGLPITSKTSETYTALLHSYARSKLLDKAEELYERIKRSSLS 192

Query: 491 LTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQI 550
            TAL +NEMMTLY SVGQ+EKVS +V +LK+ KV  DIFTYNLWISS AATLN+D V +I
Sbjct: 193 FTALTYNEMMTLYMSVGQMEKVSLVVAELKRQKVAPDIFTYNLWISSCAATLNVDQVTRI 252

Query: 551 LDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILY 610
           LDEM+R+ + N+ W+RYI++ NIY+ + HL+++ES++VV +E GITQREWITYD LIILY
Sbjct: 253 LDEMSRSSDCNDDWLRYIDIANIYVKAGHLVNAESSAVVAAEKGITQREWITYDFLIILY 312

Query: 611 AGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFD 670
           AG+ NKDKVD+IW+SLRMTKQ+M +RN+ICILS YLML HLKE GEV+DQWKQS+T +FD
Sbjct: 313 AGLRNKDKVDQIWKSLRMTKQRMINRNFICILSSYLMLGHLKEAGEVLDQWKQSTTTEFD 372

Query: 671 VSACNRLVNAFVEAGFKEKANSFVTIL--KNCEPT 702
           +SAC RL++ F+ AG  E  N+F  +L  +NC+PT
Sbjct: 373 ISACGRLLDVFLGAGLTEVGNNFHMLLIERNCDPT 407

[Close]

BLAST of CmaCh19G004680 vs. TAIR10
Match: AT5G09450.1 (AT5G09450.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 435.3 bits (1118), Expect = 7.3e-122
Identity = 222/385 (57.66%), Postives = 290/385 (75.32%), Query Frame = 1


Query: 312 NRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSA 371
           N G L  +F      +  S S Y +  A+ +  ++ES   EE +DLKSRIFRLRLPKRSA
Sbjct: 16  NNGVLGSNFIRNAESSRFSKS-YNADAAIGNSLVEES---EEKDDLKSRIFRLRLPKRSA 75

Query: 372 INVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRID 431
             V+++W  EGNQ+TI ELR ISKELRR +RYKHALE+ EWMV H E+++SD+D+A RID
Sbjct: 76  TTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWMVQHEESKISDADYASRID 135

Query: 432 LMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKES-GIPLT 491
           L++KVFGIDAAERYFEGL ID+KT ETYTSLLH+++ SK TE+AE L++++ ES  +   
Sbjct: 136 LISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFG 195

Query: 492 ALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILD 551
           A+ +NEMMTLY SVGQVEKV  ++  LKQ KV  DIFTYNLW+SS AAT NID +R+IL+
Sbjct: 196 AITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILE 255

Query: 552 EMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAG 611
           EM  + +SNE WVRYI+L +IYI S+ + ++ES   VE+E  I+QREWITYD L+IL+ G
Sbjct: 256 EMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTG 315

Query: 612 MGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVS 671
           +GNK  +D+IW+SLR T Q ++SR+YIC+LS YLML HL+E  E+I QWK+S T +FD S
Sbjct: 316 LGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDAS 375

Query: 672 ACNRLVNAFVEAGFKEKANSFVTIL 696
           AC R++NAF + G +  A+ F  IL
Sbjct: 376 ACLRILNAFRDVGLEGIASGFHLIL 396

[Close]

BLAST of CmaCh19G004680 vs. TAIR10
Match: AT4G02820.1 (AT4G02820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-55
Identity = 116/326 (35.58%), Postives = 196/326 (60.12%), Query Frame = 1


Query: 347 ESVNSEET-----NDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQ 406
           ES N +ET     + L  R+  L   KRSA+  I++W  EG+ V   EL  I +ELR+++
Sbjct: 48  ESANKKETVVGGRDTLGGRLLSLVYTKRSAVVTIRKWKEEGHSVRKYELNRIVRELRKIK 107

Query: 407 RYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTS 466
           RYKHALEI EWMV   + +L   D+A+ +DL++K+ G+++AE++FE +P   +     TS
Sbjct: 108 RYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDMPDQMRGHAACTS 167

Query: 467 LLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSK 526
           LLHS+  +KL++KAE L+EKM E G   + LP+N M+++Y S GQ EKV  ++ +LK  +
Sbjct: 168 LLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELK-IR 227

Query: 527 VHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHS 586
              DI TYNLW+++ A+  +++G  ++  +  +    N  WV Y  L N+Y  + + +  
Sbjct: 228 TSPDIVTYNLWLTAFASGNDVEGAEKVYLK-AKEEKLNPDWVTYSVLTNLYAKTDN-VEK 287

Query: 587 ESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILS 646
              ++ E E  ++++  + Y  LI L+A +G+KD V+  W+ ++ + +KM    Y+ ++S
Sbjct: 288 ARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMIS 347

Query: 647 CYLMLDHLKEIGEVIDQWKQ-SSTGD 667
             + L   ++   + D+W+  S TGD
Sbjct: 348 AVVKLGEFEQAKGLYDEWESVSGTGD 370

[Close]

BLAST of CmaCh19G004680 vs. TAIR10
Match: AT2G20710.1 (AT2G20710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 190.7 bits (483), Expect = 3.1e-48
Identity = 104/340 (30.59%), Postives = 183/340 (53.82%), Query Frame = 1


Query: 357 LKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSH 416
           L+ R+ R   P  S I V+  W  +GN V  +EL +I K LR+  R+ HAL+I +WM  H
Sbjct: 40  LQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSEH 99

Query: 417 NENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAE 476
             +E+S+ D AIR+DL+ KV G+  AE++FE +P++ +    Y +LL+ ++  K+  KAE
Sbjct: 100 RVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAE 159

Query: 477 TLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSL 536
            ++++MKE G     LP+N M+ LY   G+   V  ++ +++   V  DIFT N  + + 
Sbjct: 160 QVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAY 219

Query: 537 AATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGI-TQ 596
           +   +++G+ + L     +   +  W  Y +  N YI  A L       + +SE  +  Q
Sbjct: 220 SVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYI-KAGLTEKALEMLRKSEQMVNAQ 279

Query: 597 REWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEV 656
           +    Y++L+  Y   G K++V  +W SL        +  YI ++S  L +D ++E+ ++
Sbjct: 280 KRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEVEKI 339

Query: 657 IDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANSFVTIL 696
           +++W ++    FD+   + L+  + + G  EKA   V IL
Sbjct: 340 MEEW-EAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNIL 376

[Close]

BLAST of CmaCh19G004680 vs. TAIR10
Match: AT5G27460.1 (AT5G27460.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-47
Identity = 114/341 (33.43%), Postives = 184/341 (53.96%), Query Frame = 1


Query: 355 NDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMV 414
           N LK  I R   P+RS  +++Q     G+ V+++ELR ISK L R  RY  AL+++EWM 
Sbjct: 39  NSLKE-ILRKNGPRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEWME 98

Query: 415 SHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGL---PIDAKTCET-YTSLLHSFSGSK 474
           +  + E S  D A+R+DL+ K  G+   E YFE L    +  +  ++ Y  LL ++  +K
Sbjct: 99  NQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNK 158

Query: 475 LTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYN 534
           + ++AE L EK+   G  +T  PFNEMM LY + GQ EKV  +V+ +K +K+  ++ +YN
Sbjct: 159 MVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYN 218

Query: 535 LWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVE-S 594
           LW+++      +  V  +  EM  + +    W     L N+YI S      ++  V+E +
Sbjct: 219 LWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSG--FDEKARLVLEDA 278

Query: 595 ESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHL 654
           E  + +   + Y  LI LYA +GNK+ V  +W   +    +++  NYIC+LS  +    L
Sbjct: 279 EKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDL 338

Query: 655 KEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKANS 691
           +E   V  +W ++   ++DV   N L+ A+V  G   KA S
Sbjct: 339 EEAERVFSEW-EAQCFNYDVRVSNVLLGAYVRNGEIRKAES 375

[Close]

BLAST of CmaCh19G004680 vs. TAIR10
Match: AT1G60770.1 (AT1G60770.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 187.6 bits (475), Expect = 2.7e-47
Identity = 110/301 (36.54%), Postives = 169/301 (56.15%), Query Frame = 1


Query: 389 ELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEG 448
           E+ +  K+LR    Y  AL++ E M     N+ + SD AI +DL+ K   I A E YF  
Sbjct: 57  EVGDTIKKLRNRGLYYPALKLSEVMEERGMNK-TVSDQAIHLDLVAKAREITAGENYFVD 116

Query: 449 LPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVE 508
           LP  +KT  TY SLL+ +    LTEKAE L  KMKE  I  +++ +N +MTLYT  G+ E
Sbjct: 117 LPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETE 176

Query: 509 KVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDEMTRNPNSNEVWVRYINL 568
           KV +++ +LK   V  D +TYN+W+ +LAAT +I GV ++++EM R+      W  Y N+
Sbjct: 177 KVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNM 236

Query: 569 VNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKVDEIWRSLRMTK 628
            +IY+  A L      ++ E E   TQR++  Y  LI LY  +G   +V  IWRSLR+  
Sbjct: 237 ASIYV-DAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAI 296

Query: 629 QKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSACNRLVNAFVEAGFKEKA 688
            K ++  Y+ ++   + L+ L     +  +W Q++   +D+   N L+ A+ + G  +KA
Sbjct: 297 PKTSNVAYLNMIQVLVKLNDLPGAETLFKEW-QANCSTYDIRIVNVLIGAYAQEGLIQKA 354

Query: 689 N 690
           N
Sbjct: 357 N 354

[Close]

BLAST of CmaCh19G004680 vs. NCBI nr
Match: gi|449438238|ref|XP_004136896.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 691.8 bits (1784), Expect = 1.2e-195
Identity = 342/398 (85.93%), Postives = 373/398 (93.72%), Query Frame = 1


Query: 308 SMNRNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLP 367
           + +RNRGFLNQSFK+ PVFNEA+VSNYCSHGALRSES DESVN EE NDLKSRIF+LRLP
Sbjct: 9   AFSRNRGFLNQSFKSTPVFNEANVSNYCSHGALRSESFDESVNYEEFNDLKSRIFQLRLP 68

Query: 368 KRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFA 427
           KRSAI V++RWTSEGNQVTI ELRNISKELR++QRYKHALEILEWMVSHN++ELSDSDFA
Sbjct: 69  KRSAIRVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMVSHNQSELSDSDFA 128

Query: 428 IRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGI 487
           IRIDLMTKVFG+DAAERYFEGLPIDAKTCETYT+LLHSF+GSKLT+KAETLYEKMKES I
Sbjct: 129 IRIDLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKMKESDI 188

Query: 488 PLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQ 547
           PLTALPFNEMMTLYTS+GQVEKVSSIV+DLKQ  VH DIFTYNLWISSLAA LNIDGV+Q
Sbjct: 189 PLTALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAALNIDGVKQ 248

Query: 548 ILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIIL 607
           IL+EM  NPNSNE WVRYI LVNIY+ SA+LLHSESNSVVES SGI+QREWITYDLLIIL
Sbjct: 249 ILNEMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGISQREWITYDLLIIL 308

Query: 608 YAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDF 667
           YAG+GNKDK+D+IWRSLRMTKQKMTSRNYICI+SCYLMLD LKEIGEVIDQWKQS+T DF
Sbjct: 309 YAGLGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDF 368

Query: 668 DVSACNRLVNAFVEAGFKEKANSFVTIL--KNCEPTEA 704
           D+S+CNRLVNAF+EAG  EKANSFV +L  KNCEPTEA
Sbjct: 369 DISSCNRLVNAFIEAGLHEKANSFVNVLIQKNCEPTEA 406

[Close]

BLAST of CmaCh19G004680 vs. NCBI nr
Match: gi|778724550|ref|XP_011658826.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 691.4 bits (1783), Expect = 1.6e-195
Identity = 342/395 (86.58%), Postives = 371/395 (93.92%), Query Frame = 1


Query: 311 RNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRS 370
           RNRGFLNQSFK+ PVFNEA+VSNYCSHGALRSES DESVN EE NDLKSRIF+LRLPKRS
Sbjct: 15  RNRGFLNQSFKSTPVFNEANVSNYCSHGALRSESFDESVNYEEFNDLKSRIFQLRLPKRS 74

Query: 371 AINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRI 430
           AI V++RWTSEGNQVTI ELRNISKELR++QRYKHALEILEWMVSHN++ELSDSDFAIRI
Sbjct: 75  AIRVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMVSHNQSELSDSDFAIRI 134

Query: 431 DLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLT 490
           DLMTKVFG+DAAERYFEGLPIDAKTCETYT+LLHSF+GSKLT+KAETLYEKMKES IPLT
Sbjct: 135 DLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKMKESDIPLT 194

Query: 491 ALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILD 550
           ALPFNEMMTLYTS+GQVEKVSSIV+DLKQ  VH DIFTYNLWISSLAA LNIDGV+QIL+
Sbjct: 195 ALPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAALNIDGVKQILN 254

Query: 551 EMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAG 610
           EM  NPNSNE WVRYI LVNIY+ SA+LLHSESNSVVES SGI+QREWITYDLLIILYAG
Sbjct: 255 EMNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGISQREWITYDLLIILYAG 314

Query: 611 MGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVS 670
           +GNKDK+D+IWRSLRMTKQKMTSRNYICI+SCYLMLD LKEIGEVIDQWKQS+T DFD+S
Sbjct: 315 LGNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDFDIS 374

Query: 671 ACNRLVNAFVEAGFKEKANSFVTIL--KNCEPTEA 704
           +CNRLVNAF+EAG  EKANSFV +L  KNCEPTEA
Sbjct: 375 SCNRLVNAFIEAGLHEKANSFVNVLIQKNCEPTEA 409

[Close]

BLAST of CmaCh19G004680 vs. NCBI nr
Match: gi|778724555|ref|XP_011658827.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 687.6 bits (1773), Expect = 2.3e-194
Identity = 340/394 (86.29%), Postives = 370/394 (93.91%), Query Frame = 1


Query: 312 NRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSA 371
           +RGFLNQSFK+ PVFNEA+VSNYCSHGALRSES DESVN EE NDLKSRIF+LRLPKRSA
Sbjct: 11  SRGFLNQSFKSTPVFNEANVSNYCSHGALRSESFDESVNYEEFNDLKSRIFQLRLPKRSA 70

Query: 372 INVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRID 431
           I V++RWTSEGNQVTI ELRNISKELR++QRYKHALEILEWMVSHN++ELSDSDFAIRID
Sbjct: 71  IRVLERWTSEGNQVTIAELRNISKELRKIQRYKHALEILEWMVSHNQSELSDSDFAIRID 130

Query: 432 LMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLTA 491
           LMTKVFG+DAAERYFEGLPIDAKTCETYT+LLHSF+GSKLT+KAETLYEKMKES IPLTA
Sbjct: 131 LMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKMKESDIPLTA 190

Query: 492 LPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILDE 551
           LPFNEMMTLYTS+GQVEKVSSIV+DLKQ  VH DIFTYNLWISSLAA LNIDGV+QIL+E
Sbjct: 191 LPFNEMMTLYTSIGQVEKVSSIVDDLKQRMVHPDIFTYNLWISSLAAALNIDGVKQILNE 250

Query: 552 MTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGM 611
           M  NPNSNE WVRYI LVNIY+ SA+LLHSESNSVVES SGI+QREWITYDLLIILYAG+
Sbjct: 251 MNHNPNSNENWVRYIELVNIYVKSANLLHSESNSVVESVSGISQREWITYDLLIILYAGL 310

Query: 612 GNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVSA 671
           GNKDK+D+IWRSLRMTKQKMTSRNYICI+SCYLMLD LKEIGEVIDQWKQS+T DFD+S+
Sbjct: 311 GNKDKIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDFDISS 370

Query: 672 CNRLVNAFVEAGFKEKANSFVTIL--KNCEPTEA 704
           CNRLVNAF+EAG  EKANSFV +L  KNCEPTEA
Sbjct: 371 CNRLVNAFIEAGLHEKANSFVNVLIQKNCEPTEA 404

[Close]

BLAST of CmaCh19G004680 vs. NCBI nr
Match: gi|659110259|ref|XP_008455133.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 686.8 bits (1771), Expect = 4.0e-194
Identity = 338/398 (84.92%), Postives = 375/398 (94.22%), Query Frame = 1


Query: 308 SMNRNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLP 367
           + +RNRGFLNQSFK+IPVFNEA++SNYCSHGALRSES D+SVNSEE NDLKSRIF+LRLP
Sbjct: 9   AFSRNRGFLNQSFKSIPVFNEANISNYCSHGALRSESFDDSVNSEEFNDLKSRIFQLRLP 68

Query: 368 KRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFA 427
           KRSAI V++RWTSEGNQVTITELRNISKELR++QRYKHALEILEWMV+HN+++LSDSDFA
Sbjct: 69  KRSAIRVLERWTSEGNQVTITELRNISKELRKIQRYKHALEILEWMVTHNKSDLSDSDFA 128

Query: 428 IRIDLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGI 487
           IRIDLMTKVFG+DAAERYFEGLPIDAKTCETYT+LLHSF+GSKLT+KAETLYEK+KES I
Sbjct: 129 IRIDLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKIKESDI 188

Query: 488 PLTALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQ 547
           PLTALPFNEMMTLYTS+GQVEKVSSIV+DLKQ  VH DIFTYNLWISSLAA LNIDGV+Q
Sbjct: 189 PLTALPFNEMMTLYTSIGQVEKVSSIVDDLKQKMVHPDIFTYNLWISSLAAALNIDGVKQ 248

Query: 548 ILDEMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIIL 607
           IL+EM +NPNSNE WVRYI LVNIYI SA+LLHS SNSVVES SGI+QREWITYDLLIIL
Sbjct: 249 ILNEMNQNPNSNENWVRYIELVNIYIKSANLLHSGSNSVVESASGISQREWITYDLLIIL 308

Query: 608 YAGMGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDF 667
           YAG+GNKD++D+IWRSLRMTKQKMTSRNYICI+SCYLMLD LKEIGEVIDQWKQS+T DF
Sbjct: 309 YAGLGNKDRIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDF 368

Query: 668 DVSACNRLVNAFVEAGFKEKANSFVTIL--KNCEPTEA 704
           D+S+CNRLVNAFVEAG  EKANSFV +L  KNC+PT A
Sbjct: 369 DISSCNRLVNAFVEAGLNEKANSFVNVLIQKNCDPTVA 406

[Close]

BLAST of CmaCh19G004680 vs. NCBI nr
Match: gi|659110257|ref|XP_008455132.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 686.4 bits (1770), Expect = 5.2e-194
Identity = 338/395 (85.57%), Postives = 373/395 (94.43%), Query Frame = 1


Query: 311 RNRGFLNQSFKAIPVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRS 370
           RNRGFLNQSFK+IPVFNEA++SNYCSHGALRSES D+SVNSEE NDLKSRIF+LRLPKRS
Sbjct: 15  RNRGFLNQSFKSIPVFNEANISNYCSHGALRSESFDDSVNSEEFNDLKSRIFQLRLPKRS 74

Query: 371 AINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRI 430
           AI V++RWTSEGNQVTITELRNISKELR++QRYKHALEILEWMV+HN+++LSDSDFAIRI
Sbjct: 75  AIRVLERWTSEGNQVTITELRNISKELRKIQRYKHALEILEWMVTHNKSDLSDSDFAIRI 134

Query: 431 DLMTKVFGIDAAERYFEGLPIDAKTCETYTSLLHSFSGSKLTEKAETLYEKMKESGIPLT 490
           DLMTKVFG+DAAERYFEGLPIDAKTCETYT+LLHSF+GSKLT+KAETLYEK+KES IPLT
Sbjct: 135 DLMTKVFGVDAAERYFEGLPIDAKTCETYTALLHSFAGSKLTDKAETLYEKIKESDIPLT 194

Query: 491 ALPFNEMMTLYTSVGQVEKVSSIVNDLKQSKVHSDIFTYNLWISSLAATLNIDGVRQILD 550
           ALPFNEMMTLYTS+GQVEKVSSIV+DLKQ  VH DIFTYNLWISSLAA LNIDGV+QIL+
Sbjct: 195 ALPFNEMMTLYTSIGQVEKVSSIVDDLKQKMVHPDIFTYNLWISSLAAALNIDGVKQILN 254

Query: 551 EMTRNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAG 610
           EM +NPNSNE WVRYI LVNIYI SA+LLHS SNSVVES SGI+QREWITYDLLIILYAG
Sbjct: 255 EMNQNPNSNENWVRYIELVNIYIKSANLLHSGSNSVVESASGISQREWITYDLLIILYAG 314

Query: 611 MGNKDKVDEIWRSLRMTKQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSTGDFDVS 670
           +GNKD++D+IWRSLRMTKQKMTSRNYICI+SCYLMLD LKEIGEVIDQWKQS+T DFD+S
Sbjct: 315 LGNKDRIDQIWRSLRMTKQKMTSRNYICIVSCYLMLDDLKEIGEVIDQWKQSTTTDFDIS 374

Query: 671 ACNRLVNAFVEAGFKEKANSFVTIL--KNCEPTEA 704
           +CNRLVNAFVEAG  EKANSFV +L  KNC+PT A
Sbjct: 375 SCNRLVNAFVEAGLNEKANSFVNVLIQKNCDPTVA 409

The following BLAST results are available for this feature:

BLAST of CmaCh19G004680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP372_ARATH	1.3e-120	57.66	Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidop...	[more]
PP302_ARATH	2.8e-54	35.58	Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidop...	[more]
PP166_ARATH	5.6e-47	30.59	Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidop...	[more]
PP400_ARATH	2.8e-46	33.43	Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN...	[more]
PPR86_ARATH	4.7e-46	36.54	Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmaCh19G004680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K649_CUCSA	1.1e-195	86.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G066290 PE=4 SV=1	[more]
A0A067DHG1_CITSI	2.7e-141	66.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015370mg PE=4 SV=1	[more]
A0A072VEC1_MEDTR	1.2e-136	63.36	PPR containing plant protein OS=Medicago truncatula GN=MTR_1g022400 PE=4 SV=1	[more]
A0A0D2TVY9_GOSRA	4.5e-136	63.66	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G057100 PE=4 SV=1	[more]
A0A067KXR4_JATCU	2.9e-135	61.77	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24946 PE=4 SV=1	[more]

BLAST of CmaCh19G004680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09450.1	7.3e-122	57.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G02820.1	1.6e-55	35.58	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G20710.1	3.1e-48	30.59	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G27460.1	1.6e-47	33.43	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G60770.1	2.7e-47	36.54	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmaCh19G004680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438238\|ref\|XP_004136896.1\|	1.2e-195	85.93	PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial ...	[more]
gi\|778724550\|ref\|XP_011658826.1\|	1.6e-195	86.58	PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial ...	[more]
gi\|778724555\|ref\|XP_011658827.1\|	2.3e-194	86.29	PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial ...	[more]
gi\|659110259\|ref\|XP_008455133.1\|	4.0e-194	84.92	PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial ...	[more]
gi\|659110257\|ref\|XP_008455132.1\|	5.2e-194	85.57	PREDICTED: pentatricopeptide repeat-containing protein At5g09450, mitochondrial ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR002885	Pentatricopeptide_repeat
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G004680.1	CmaCh19G004680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 164..207 score: 2.8
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 165..206 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 165..207 score: 12
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 527..555 score: 0.16coord: 458..487 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 458..490 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 597..631 score: 5.93coord: 668..698 score: 5.919coord: 525..555 score: 7.596coord: 490..524 score: 6.763coord: 455..489 score: 1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 162..211 score: 2.5
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 346..695 score: 7.5E
None	No IPR available	PANTHER	PTHR24015:SF155	SUBFAMILY NOT NAMED	coord: 346..695 score: 7.5E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 159..213 score: 4.29

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G004680	Cucsa.218400	Cucumber (Gy14) v1	cgycmaB0626
CmaCh19G004680	Csa7G066290	Cucumber (Chinese Long) v2	cmacuB535
CmaCh19G004680	MELO3C018588	Melon (DHL92) v3.5.1	cmameB457
CmaCh19G004680	ClCG09G015930	Watermelon (Charleston Gray)	cmawcgB450
CmaCh19G004680	CSPI07G06070	Wild cucumber (PI 183967)	cmacpiB540
CmaCh19G004680	CmoCh19G004840	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G004680	CmoCh11G014770	Cucurbita moschata (Rifu)	cmacmoB494
CmaCh19G004680	Lsi03G007290	Bottle gourd (USVL1VR-Ls)	cmalsiB484
CmaCh19G004680	Cp4.1LG15g03610	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G004680	Cp4.1LG04g07030	Cucurbita pepo (Zucchini)	cmacpeB539
CmaCh19G004680	MELO3C018588.2	Melon (DHL92) v3.6.1	cmamedB530
CmaCh19G004680	CsaV3_7G007050	Cucumber (Chinese Long) v3	cmacucB0644
CmaCh19G004680	Cla97C09G177740	Watermelon (97103) v2	cmawmbB558
CmaCh19G004680	Bhi05G000739	Wax gourd	cmawgoB0642
CmaCh19G004680	CsGy7G005750	Cucumber (Gy14) v2	cgybcmaB951
CmaCh19G004680	Carg22820	Silver-seed gourd	carcmaB0401

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G004680	CmaCh11G016590	Cucurbita maxima (Rimu)	cmacmaB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G004680	Melon (DHL92) v3.6.1	cmamedB535
CmaCh19G004680	Cucumber (Chinese Long) v3	cmacucB0639
CmaCh19G004680	Watermelon (97103) v2	cmawmbB550
CmaCh19G004680	Cucumber (Gy14) v1	cgycmaB0624
CmaCh19G004680	Wild cucumber (PI 183967)	cmacpiB534
CmaCh19G004680	Cucumber (Chinese Long) v2	cmacuB528
CmaCh19G004680	Melon (DHL92) v3.5.1	cmameB463
CmaCh19G004680	Watermelon (Charleston Gray)	cmawcgB442
CmaCh19G004680	Watermelon (97103) v1	cmawmB473
CmaCh19G004680	Cucumber (Gy14) v2	cgybcmaB945