CmaCh19G002560 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G002560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSerine/arginine rich splicing factor, putative
LocationCma_Chr19 : 1832249 .. 1834793 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCACTTCGGAAGGTCCGGTCCTCCAGATATTGCAGACACCTATTCGCTTCTCGTGCTCAACATTACCTTCCGTATGATTCCGTATATCTCTTTTTTTTTTATTTCTCAAATTTCCTTGTTTCTTTTGTGTTTTCCTGTTTTGTATCGTATTCAGTCCCCACTGAGATCTTTTTTGTTTTTTTTTTTTGTGTTTTTAGGAACCACTGCTGATGATCTCTACCCGCTGTTCCACAAGTATGGTAAGGTTGTCGACATCTTCATCCCCAGAGACCGAAGGTATAATTCCCTGCTTTGTTGCGTTTGTTTTCTTATGAAATTTGTTCGATTTCTGTCAGAGATGACGATGGATGTTTTTTTAATAGCTGGTAAGAGTTTTGTGTTTGTTAGATTAAACATTTTGAGGTTAGGATTGAATTGATTTCCTTCCATTGATATTCATCTGGTTCTTATGAAATTAGTTTGCACGTGAGGGTGGAATGATATTCTTCATTCAGCTTAAATTATGCTTGGGCTCAGTTGGGGACTTTATTTATTTTTCTGTTTGTTCATCTTTTGTTAGCCATCAATTATTCTCGTTTTGATTATTTCGTAATTGTCTCTTTTATTGTATGGTGGCTCAGAACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGAAAGGCTAGATGGTACCCCTGGCACTTTGTTTGTTTCCTGTTGTTTGATCTTGTCCTTTTCCTCTTCAAGTGGAAGTGATTTGTAGATACAAGTTACAAGGAAGATGTTTTATATCTTTGTTGGACTGAAGGCTGAGAATCTTATGGTCGTTATTCAAATCAGTTTGGGCGGCCCCTATAAGATCAATATTTTCTGAATTAACTCCCTCACTTCTTTGTTAGTTCTGGTTTTGAATTACCATCATGCCTCTACTTACTTCCATTTGATTATTTCTATGCAGTTGGTTTGGGGAGGTAATCTGCTGCATATAACTTTGAAGCTATATATATAATTATTTATTTATTTTTTTAAATTTTGTCATGTTCCAGGTATTGTGGTTGATGGACGAGAGATCACCGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATGTAAGTAATGAAGTTGTGGTTTTCCTCATGAATGCTCACGTTTGGGCCTAACTTCTCACCTCTTATGTATTTGTTTTGCTAATGGGTGTTGTATTTATGTCAAAATATGCTTTTAGTCACAAAGGAAAGGTCAGTGAATCATTTCCAAAGTCGAGAAACAGGTCTAGAAGTCGCAGTCCACGGAGACGGTAATTTTCTCTTCCGCATCCCTATGAATTTTTTATATTGGGATTAAATATTTGTTGTCCTTATCCTTGAAGAATATTATCTGGTCATTAGAGTTCCTTGGTGGAATTATTATTTCTTCAGCTTTAAGATGTTCAAGGGTGAAAGCTCCTGTTGAAATAGGATATTCGAGGAATATGATGCAGCCACATTTTTGAACCCTAAGATATTGTGTTAACTGTTTGTGCCTATGATTACTTTAGCAAGCTCTTGTTTTCTGCTATCTCAGATATGAGGTTCGACGATGCTGTTTTGTCCAAGTTTTTCATTTTTTTTATGTTAGATATGGTATGCTGTTTTAACATGAGATACTATAATTATGGAAACGTAAAATGTTGGAAGATCTAAAAGGATGCTGTAGCAGTGTATTCTATATATGGCTAGGACTAGATAGTGGTGCTCAAACTTTTTCTTTCATGGAGTTCAAATTTTGACCATTTGCATGTAAAGTAACTACTTGGAATTTCTTACTTTCTGTCTATTAAGGTCCATTTCTTTATGAGCTTTTGTAGTTTTATCTTTTTGTTTTTAATTCAAGTTACTAATTGAAATTTATTACTTTCAGACATCGGGATGATCACAGAGATAGGGATTATAGGAGAAGAAGTCGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGATTGATCATGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACTATCGTAGGCGAAGCCGGAGCATCAGTCCTAGGCGGCCTAGTCCTGATTATTCCAAGGGGAGGGGAAGAGGACGCTACGTTGACGAGCGTAGAAGCCGCAGCCGTAGCCGTAGCCATAGCTATAGCCAAACTCGTGGCCGTGGTCGTGGTCGTTCGGTGGATAGGTTGTTAATTTCTTACAATTTTTATCCAGTTGGAAGAAAGTTGGGAATTGTATAATCATCTTTATCCATTTGGGAAAAAGTGGGGAATCTTATTTCTAATCAGTCATTGTTCTACATATTACAGTGCTTCCCCTGGTCGACAAAGCCCTAGTCCAAGGAGGAGTGCATCTCCTCAAAGGAGTCCATCTCCCAGGGGTGAAAGTGCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTTCCAGGAGTGTTTCACCCCGAGGTCAACCTGCTGATTCAAGAAGCCCATCTCAACCAAATTCAGATGTTGATGTGAGTTGCATTATGAACTATTTTGAATGA

mRNA sequence

ATGTCGCACTTCGGAAGGTCCGGTCCTCCAGATATTGCAGACACCTATTCGCTTCTCGTGCTCAACATTACCTTCCGAACCACTGCTGATGATCTCTACCCGCTGTTCCACAAGTATGGTAAGGTTGTCGACATCTTCATCCCCAGAGACCGAAGAACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGAAAGGCTAGATGGTACCCCTGGCACTTTGTTTGTTTCCTGTTGTTTGATCTTGTCCTTTTCCTCTTCAAGTGGAAGTATTGTGGTTGATGGACGAGAGATCACCGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGGTCAGTGAATCATTTCCAAAGTCGAGAAACAGGTCTAGAAGTCGCAGTCCACGGAGACGACATCGGGATGATCACAGAGATAGGGATTATAGGAGAAGAAGTCGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGATTGATCATGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACTATCGTAGGCGAAGCCGGAGCATCAGTCCTAGGCGGCCTAGTCCTGATTATTCCAAGGGGAGGGGAAGAGGACGCTACGTTGACGAGCGTAGAAGCCGCAGCCGTAGCCGTAGCCATAGCTATAGCCAAACTCGTGGCCGTGGTCGTGGTCGTTCGGTGGATAGTGCTTCCCCTGGTCGACAAAGCCCTAGTCCAAGGAGGAGTGCATCTCCTCAAAGGAGTCCATCTCCCAGGGGTGAAAGTGCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTTCCAGGAGTGTTTCACCCCGAGGTCAACCTGCTGATTCAAGAAGCCCATCTCAACCAAATTCAGATGTTGATGTGAGTTGCATTATGAACTATTTTGAATGA

Coding sequence (CDS)

ATGTCGCACTTCGGAAGGTCCGGTCCTCCAGATATTGCAGACACCTATTCGCTTCTCGTGCTCAACATTACCTTCCGAACCACTGCTGATGATCTCTACCCGCTGTTCCACAAGTATGGTAAGGTTGTCGACATCTTCATCCCCAGAGACCGAAGAACTGGTGATTCTAGAGGTTTTGCATTTGTGCGTTACAAGTATGCAGATGAGGCTCAGAAAGCAGTGGAAAGGCTAGATGGTACCCCTGGCACTTTGTTTGTTTCCTGTTGTTTGATCTTGTCCTTTTCCTCTTCAAGTGGAAGTATTGTGGTTGATGGACGAGAGATCACCGTTCAGTTTGCAAAATATGGTCCAAATGCAGAAAGGATTCACAAAGGAAAGGTCAGTGAATCATTTCCAAAGTCGAGAAACAGGTCTAGAAGTCGCAGTCCACGGAGACGACATCGGGATGATCACAGAGATAGGGATTATAGGAGAAGAAGTCGAAGCAGAAGTAGAAGCAGAAGCTTGGACAGGATTGATCATGATAGGCGTGGAAGAGAAAGGGAGAGGGAAAGAGACTATCGTAGGCGAAGCCGGAGCATCAGTCCTAGGCGGCCTAGTCCTGATTATTCCAAGGGGAGGGGAAGAGGACGCTACGTTGACGAGCGTAGAAGCCGCAGCCGTAGCCGTAGCCATAGCTATAGCCAAACTCGTGGCCGTGGTCGTGGTCGTTCGGTGGATAGTGCTTCCCCTGGTCGACAAAGCCCTAGTCCAAGGAGGAGTGCATCTCCTCAAAGGAGTCCATCTCCCAGGGGTGAAAGTGCTGAAAGAAATGGTGATGGTGGAAGGTCTCCAACTTCCAGGAGTGTTTCACCCCGAGGTCAACCTGCTGATTCAAGAAGCCCATCTCAACCAAATTCAGATGTTGATGTGAGTTGCATTATGAACTATTTTGAATGA

Protein sequence

MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAERIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVDSASPGRQSPSPRRSASPQRSPSPRGESAERNGDGGRSPTSRSVSPRGQPADSRSPSQPNSDVDVSCIMNYFE
Homology
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BLAST of CmaCh19G002560 vs. Swiss-Prot
Match: SC35_ARATH (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 8.5e-64
Identity = 184/326 (56.44%), Postives = 203/326 (62.27%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKY DEA KAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYKDEAHKAVERLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSR-NRSRS----------------------RSPRRRHRDDHRDRDYR 180
           +I KG+V E  PKSR +RSRS                      RSPRRR RDD+R++DYR
Sbjct: 121 KISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYR 180

Query: 181 RRSRSRSRSRSLDRIDHDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERR 240
           +RSRSRS         +DRR R  E++RD+RRR+RS   R  SPD  K R RGRY +E  
Sbjct: 181 KRSRSRS---------YDRRERHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNE-- 240

Query: 241 SRSRSRSHSYSQTRGRGRGRSVDSASPGRQ----------SPSPRRSASPQRSPSPRGES 294
           SRS SRS S S  R   R  S    SP R+          SPSPRRS SP RSP+ +  S
Sbjct: 241 SRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSP-RSPALQKAS 288

[Close]
BLAST of CmaCh19G002560 vs. Swiss-Prot
Match: SRSF2_CHICK (Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.3e-23
Identity = 103/264 (39.02%), Postives = 136/264 (51.52%), Query Frame = 1 

Query: 4   FGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDGA---------------------VLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRER 183
             +G     +  S    RSRSPRRR           RRSRSRSRSRS          R R
Sbjct: 123 SRRGPPPRRYGSSGYGRRSRSPRRR-----------RRSRSRSRSRS----------RSR 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVDS 243
            R R  R +SRS +  R     S+   + R     +S+S S S S S++R R R RS   
Sbjct: 183 SRSRYSRSKSRSRTRSR-----SRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPP 217

Query: 244 ASPGRQSPSPRRSASPQRSPSPRG 266
            S  R+S S  RS SP +SP   G
Sbjct: 243 TSK-RESNSRSRSKSPPKSPEEEG 217

[Close]
BLAST of CmaCh19G002560 vs. Swiss-Prot
Match: SRSF2_PIG (Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.6e-23
Identity = 103/264 (39.02%), Postives = 136/264 (51.52%), Query Frame = 1 

Query: 4   FGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDGA---------------------VLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRER 183
             +G     +       RSRSPRR           RRRSRSRSRSRS          R R
Sbjct: 123 SRRGPPPRRYGGGGYGRRSRSPRR-----------RRRSRSRSRSRS----------RSR 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVDS 243
            R R  R +SRS +  R     S+   + R     +S+S S S S S++R R R RS   
Sbjct: 183 SRSRYSRSKSRSRTRSR-----SRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPP 217

Query: 244 ASPGRQSPSPRRSASPQRSPSPRG 266
           AS  R+S S  RS SP +SP   G
Sbjct: 243 ASK-RESKSRSRSKSPPKSPEEEG 217

[Close]
BLAST of CmaCh19G002560 vs. Swiss-Prot
Match: SRSF2_BOVIN (Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 9.5e-23
Identity = 104/269 (38.66%), Postives = 137/269 (50.93%), Query Frame = 1 

Query: 4   FGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDGA---------------------VLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRER 183
             +G     +       RSRSPRR           RRRSRSRSRSRS          R R
Sbjct: 123 SRRGPPPRRYGGGGYGRRSRSPRR-----------RRRSRSRSRSRS----------RSR 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRS--RSRSRSHSYSQTRGRGRGRSV 243
            R R  R +SR           S+ R R R   + RS  RS+S+S S S++R R R RS 
Sbjct: 183 SRSRYSRSKSR-----------SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSR 217

Query: 244 DSASP---GRQSPSPRRSASPQRSPSPRG 266
             + P    R+S S  RS SP +SP   G
Sbjct: 243 SRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]
BLAST of CmaCh19G002560 vs. Swiss-Prot
Match: SRSF2_RAT (Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus GN=Srsf2 PE=1 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 9.5e-23
Identity = 104/269 (38.66%), Postives = 137/269 (50.93%), Query Frame = 1 

Query: 4   FGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F KYG+V D++IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYG--PNAER 123
           +    +A+ A++ +DG                      V+DGRE+ VQ A+YG  P++  
Sbjct: 63  FHDKRDAEDAMDAMDGA---------------------VLDGRELRVQMARYGRPPDSHH 122

Query: 124 IHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRER 183
             +G     +       RSRSPRR           RRRSRSRSRSRS          R R
Sbjct: 123 SRRGPPPRRYGGGGYGRRSRSPRR-----------RRRSRSRSRSRS----------RSR 182

Query: 184 ERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRS--RSRSRSHSYSQTRGRGRGRSV 243
            R R  R +SR           S+ R R R   + RS  RS+S+S S S++R R R RS 
Sbjct: 183 SRSRYSRSKSR-----------SRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSR 217

Query: 244 DSASP---GRQSPSPRRSASPQRSPSPRG 266
             + P    R+S S  RS SP +SP   G
Sbjct: 243 SRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]
BLAST of CmaCh19G002560 vs. TrEMBL
Match: A0A0A0K7C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062820 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 3.9e-116
Identity = 249/308 (80.84%), Postives = 260/308 (84.42%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDGT                     +VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDGT---------------------MVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKGK+SE+FPKSR RSRSRSPRRRHRDD+RD+DYRRRSRSRSRSRSLD+ D DRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRY DERRSRS SRS      R RGR RSVD
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRS------RSRGRSRSVD 240

Query: 241 SASPG------RQSPSPRRSASPQRSPSPRGESAERNGDG-GRSPTSRSVSPRGQPADSR 300
           S SPG      R+SPSPRRS SP+RSPSPR ES ERNG+G GRSPTSRSVSPRG+PADSR
Sbjct: 241 SGSPGRRSPSPRRSPSPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSQPNSD 302
           SPS  NSD
Sbjct: 301 SPSPQNSD 281

[Close]
BLAST of CmaCh19G002560 vs. TrEMBL
Match: A0A067KEL8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17056 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.9e-88
Identity = 204/303 (67.33%), Postives = 227/303 (74.92%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDL+PLF KYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAV+RLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVDRLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKG++ E  P+SRN+SRSRSPRRR+RDD++DRDYRR    RSRSRSLDR + D   + 
Sbjct: 121 RIHKGRIIEPVPRSRNKSRSRSPRRRYRDDYKDRDYRR----RSRSRSLDRYERD---KG 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           R ++RD+RRRSRS   R  SPDYS+GRGRGRY DERRS S                RS D
Sbjct: 181 RGKDRDHRRRSRS---RSASPDYSRGRGRGRYDDERRSSS----------------RSAD 240

Query: 241 SASPGRQSPSPRRSASPQRSPSPRGESAERNGDGGRSPTSRSVSPRGQPADSRSPSQPNS 300
           SASP R+SPSPRRS+SP+++   +GES +R    GRSPT RS SPRG PA SRSPS+ NS
Sbjct: 241 SASP-RRSPSPRRSSSPRKNSPSKGESPDRRSRDGRSPTPRSASPRGWPAASRSPSRRNS 255

Query: 301 DVD 304
           DVD
Sbjct: 301 DVD 255

[Close]
BLAST of CmaCh19G002560 vs. TrEMBL
Match: A0A059BA96_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00770 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 5.9e-88
Identity = 214/309 (69.26%), Postives = 231/309 (74.76%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDL+PLF KYGKVVDIFIPRDRRTG+SRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVE+LDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVEKLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKGK+SE+ P+SR RSRSRSPRRR+RDD+RDRD   R R RSRSRS DR D D   R 
Sbjct: 121 RIHKGKISENLPRSRYRSRSRSPRRRYRDDNRDRD---RDRRRSRSRSRDRYDRD---RY 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           R R++D RR+SRS   R  SPDY K RGRGRY DERRSRSRSRS S S        RS+D
Sbjct: 181 RGRDKDDRRQSRS---RSASPDYYKSRGRGRYDDERRSRSRSRSRSLS--------RSMD 240

Query: 241 SASPGRQSPSPRRSASPQRSPS------PRGESAERNGDGGRSPTSRSVSPRGQPADSRS 300
           SASP R+SP PR SASP+RSPS      PRGES +     GRSP  RSVSPRG+ +DSRS
Sbjct: 241 SASP-RRSPPPRHSASPRRSPSPRRSLTPRGESPDGRSRDGRSPV-RSVSPRGRRSDSRS 269

Query: 301 PSQPNSDVD 304
           PS  NSDVD
Sbjct: 301 PSPRNSDVD 269

[Close]
BLAST of CmaCh19G002560 vs. TrEMBL
Match: A0A061E2F3_THECC (Serine/arginine rich splicing factor, putative isoform 3 OS=Theobroma cacao GN=TCM_007486 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 6.5e-87
Identity = 202/304 (66.45%), Postives = 225/304 (74.01%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDL+PLF KYGKVVDIFIP+DRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDD-HRDRDYRRRSRSRSRSRSLDRIDHDRRGR 180
           RIHKG++ ESFP+SR RSRSRSPR+RHRDD ++DRDYRRRSRSRS        D   R R
Sbjct: 121 RIHKGRIIESFPRSRYRSRSRSPRKRHRDDNYKDRDYRRRSRSRS-------YDRHERDR 180

Query: 181 ERERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSV 240
            R +++DYRRRSRS   R  SPDYSKGRGRGRY D+RRS SRS                 
Sbjct: 181 YRGKDKDYRRRSRS---RSASPDYSKGRGRGRYDDDRRSSSRSM---------------- 240

Query: 241 DSASPGRQSPSPRRSASPQRSPSPRGESAERNGDGGRSPTSRSVSPRGQPADSRSPSQPN 300
            SASP R+S SPR+S SP+++  PRG S +R+   GR+P+ RSVSPRG+PA+SRSPS  N
Sbjct: 241 -SASPARRSVSPRKSPSPRKASPPRGGSPDRHSRDGRTPSPRSVSPRGRPAESRSPSPRN 256

Query: 301 SDVD 304
           SDVD
Sbjct: 301 SDVD 256

[Close]
BLAST of CmaCh19G002560 vs. TrEMBL
Match: B9SZR9_RICCO (Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0460560 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-86
Identity = 200/303 (66.01%), Postives = 220/303 (72.61%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDL+PLF KYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKG++ E  P+SRNRSRSRSPRRR+RDD++DRDYR+RSRS+S       +D   R + 
Sbjct: 121 RIHKGRIIEPVPRSRNRSRSRSPRRRYRDDYKDRDYRKRSRSKS-------LDRHERDKY 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           R RERDYRR+SRS   R  SPDYS+GRGRGRY DERRS S                RS+ 
Sbjct: 181 RGRERDYRRQSRS---RSASPDYSRGRGRGRYDDERRSSS----------------RSMG 240

Query: 241 SASPGRQSPSPRRSASPQRSPSPRGESAERNGDGGRSPTSRSVSPRGQPADSRSPSQPNS 300
           SASP R+SPSPRRS SP ++  P+G S +R    GRSPT RS SP G+   SRSPS  NS
Sbjct: 241 SASPARRSPSPRRSRSPLKNSPPKGASPDRRSRDGRSPTPRSASPHGRAPASRSPSPRNS 256

Query: 301 DVD 304
           DVD
Sbjct: 301 DVD 256

[Close]
BLAST of CmaCh19G002560 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 245.4 bits (625), Expect = 4.8e-65
Identity = 184/326 (56.44%), Postives = 203/326 (62.27%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI+DTYSLLVLNITFRTTADDLYPLF KYGKVVD+FIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKY DEA KAVERLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYKDEAHKAVERLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSR-NRSRS----------------------RSPRRRHRDDHRDRDYR 180
           +I KG+V E  PKSR +RSRS                      RSPRRR RDD+R++DYR
Sbjct: 121 KISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYR 180

Query: 181 RRSRSRSRSRSLDRIDHDRRGRERERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERR 240
           +RSRSRS         +DRR R  E++RD+RRR+RS   R  SPD  K R RGRY +E  
Sbjct: 181 KRSRSRS---------YDRRERHEEKDRDHRRRTRS---RSASPD-EKRRVRGRYDNE-- 240

Query: 241 SRSRSRSHSYSQTRGRGRGRSVDSASPGRQ----------SPSPRRSASPQRSPSPRGES 294
           SRS SRS S S  R   R  S    SP R+          SPSPRRS SP RSP+ +  S
Sbjct: 241 SRSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSP-RSPALQKAS 288

[Close]
BLAST of CmaCh19G002560 vs. TAIR10
Match: AT3G11400.2 (AT3G11400.2 eukaryotic translation initiation factor 3G1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-09
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 14  DTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKA 73
           D  S+ V N++  T   DL  LFH +G V  +++  D++TG SRGF FV +   ++AQ+A
Sbjct: 238 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 297

Query: 74  VERLDG 80
           + +L+G
Sbjct: 298 INKLNG 303

[Close]
BLAST of CmaCh19G002560 vs. TAIR10
Match: AT5G18810.1 (AT5G18810.1 SC35-like splicing factor 28)

HSP 1 Score: 56.6 bits (135), Expect = 3.2e-08
Identity = 67/215 (31.16%), Postives = 98/215 (45.58%), Query Frame = 1 

Query: 18  LLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERL 77
           LL+ N+      +DL   F ++G + DI++PR+  TG+ RGF FV+Y+YA++A +A++R+
Sbjct: 49  LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108

Query: 78  DGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYG---PNAERIHKGKVSESFPKS 137
           +                       V+ GREI + FA+     P   R   G  +      
Sbjct: 109 NHK---------------------VIGGREIAIVFAEENRKTPQEMRTTNG--TSGRHGD 168

Query: 138 RNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRERER------ERDYR 197
             R+  RSPRRR+R   R R   RR    S+ R  D     RR R   R      ER+Y+
Sbjct: 169 YKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYK 228

Query: 198 RRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSR 224
            R    + R P  +      R R +   RSRS SR
Sbjct: 229 SR----NCRSPREERVLTPIRSRCLSRSRSRSLSR 236

[Close]
BLAST of CmaCh19G002560 vs. TAIR10
Match: AT3G13570.1 (AT3G13570.1 SC35-like splicing factor 30A)

HSP 1 Score: 55.5 bits (132), Expect = 7.0e-08
Identity = 96/301 (31.89%), Postives = 127/301 (42.19%), Query Frame = 1 

Query: 4   FGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F ++G V DI++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDLPT--SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAERIH 123
           +    +A +A  ++DG                      ++ GRE+TV FA+         
Sbjct: 87  FMDPADAAEAKHQMDG---------------------YLLLGRELTVVFAE--------- 146

Query: 124 KGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRG-RERE 183
                       NR +    R R R    +R   RR      SRS       RRG R R 
Sbjct: 147 -----------ENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYSRS----PPPRRGRRSRS 206

Query: 184 RERDY------RRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRG 243
           R R Y      R +SRS+SP            + R  ++ RS SRS  H+ S+ R    G
Sbjct: 207 RSRGYNSPPAKRHQSRSVSP------------QDRRYEKERSYSRSPPHNGSRVRSGSPG 262

Query: 244 RSVDSASPGRQSPSPRRSASPQRSPSPRGESAERNGDGGRSPTSRSVSPRGQPADSRSPS 298
           R V S S      SPRRS SP+++ S   E A       R   S +  PRG     RSPS
Sbjct: 267 R-VKSHSR-----SPRRSVSPRKNRSYTPEQARSQSPVPRQSRSPTPVPRGAQNGDRSPS 262

[Close]
BLAST of CmaCh19G002560 vs. TAIR10
Match: AT4G13860.1 (AT4G13860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-07
Identity = 28/58 (48.28%), Postives = 33/58 (56.90%), Query Frame = 1 

Query: 22 NITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDG 80
          N++  TT D L   F  YG VVD  + RDR T  SRGF FV Y    EA+ AV  +DG
Sbjct: 9  NLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66

[Close]
BLAST of CmaCh19G002560 vs. NCBI nr
Match: gi|659110410|ref|XP_008455210.1| (PREDICTED: serine/arginine-rich splicing factor 2 isoform X2 [Cucumis melo])

HSP 1 Score: 426.4 bits (1095), Expect = 4.3e-116
Identity = 250/308 (81.17%), Postives = 260/308 (84.42%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDGT                     +VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDGT---------------------MVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKGK+SE+FPKSR RSRSRSPRRR+RDD+RDRDYRRRSRSRSRSRSLDR D DRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRY DERRSRS SRS      R RGR RSVD
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRS------RSRGRSRSVD 240

Query: 241 SASPG------RQSPSPRRSASPQRSPSPRGESAERNGD-GGRSPTSRSVSPRGQPADSR 300
           S SPG      R+SPSPRRS SP+RSPSPR ES ERNG+ GGRSPTSRSVSPRG+PADSR
Sbjct: 241 SGSPGRRSPSPRRSPSPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSQPNSD 302
           SPS  NSD
Sbjct: 301 SPSPQNSD 281

[Close]
BLAST of CmaCh19G002560 vs. NCBI nr
Match: gi|659110407|ref|XP_008455209.1| (PREDICTED: serine/arginine-rich splicing factor 2 isoform X1 [Cucumis melo])

HSP 1 Score: 426.4 bits (1095), Expect = 4.3e-116
Identity = 250/308 (81.17%), Postives = 260/308 (84.42%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDGT                     +VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDGT---------------------MVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKGK+SE+FPKSR RSRSRSPRRR+RDD+RDRDYRRRSRSRSRSRSLDR D DRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRYRDDYRDRDYRRRSRSRSRSRSLDRSDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRY DERRSRS SRS      R RGR RSVD
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSVSRS------RSRGRSRSVD 240

Query: 241 SASPG------RQSPSPRRSASPQRSPSPRGESAERNGD-GGRSPTSRSVSPRGQPADSR 300
           S SPG      R+SPSPRRS SP+RSPSPR ES ERNG+ GGRSPTSRSVSPRG+PADSR
Sbjct: 241 SGSPGRRSPSPRRSPSPRRSLSPRRSPSPRDESPERNGNGGGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSQPNSD 302
           SPS  NSD
Sbjct: 301 SPSPQNSD 281

[Close]
BLAST of CmaCh19G002560 vs. NCBI nr
Match: gi|778724346|ref|XP_004136874.2| (PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis sativus])

HSP 1 Score: 426.0 bits (1094), Expect = 5.6e-116
Identity = 249/308 (80.84%), Postives = 260/308 (84.42%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVERLDGT                     +VDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVERLDGT---------------------MVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKGK+SE+FPKSR RSRSRSPRRRHRDD+RD+DYRRRSRSRSRSRSLD+ D DRRGRE
Sbjct: 121 RIHKGKISEAFPKSRYRSRSRSPRRRHRDDYRDKDYRRRSRSRSRSRSLDKNDRDRRGRE 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           RERERD+RRRSRSISPRRPSPDYSKGRGRGRY DERRSRS SRS      R RGR RSVD
Sbjct: 181 RERERDHRRRSRSISPRRPSPDYSKGRGRGRYDDERRSRSLSRS------RSRGRSRSVD 240

Query: 241 SASPG------RQSPSPRRSASPQRSPSPRGESAERNGDG-GRSPTSRSVSPRGQPADSR 300
           S SPG      R+SPSPRRS SP+RSPSPR ES ERNG+G GRSPTSRSVSPRG+PADSR
Sbjct: 241 SGSPGRRSPSPRRSPSPRRSLSPRRSPSPREESPERNGNGVGRSPTSRSVSPRGRPADSR 281

Query: 301 SPSQPNSD 302
           SPS  NSD
Sbjct: 301 SPSPQNSD 281

[Close]
BLAST of CmaCh19G002560 vs. NCBI nr
Match: gi|702390162|ref|XP_010065585.1| (PREDICTED: serine/arginine-rich splicing factor SC35-like isoform X2 [Eucalyptus grandis])

HSP 1 Score: 332.4 bits (851), Expect = 8.4e-88
Identity = 214/309 (69.26%), Postives = 231/309 (74.76%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDL+PLF KYGKVVDIFIPRDRRTG+SRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAVE+LDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVEKLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKGK+SE+ P+SR RSRSRSPRRR+RDD+RDRD   R R RSRSRS DR D D   R 
Sbjct: 121 RIHKGKISENLPRSRYRSRSRSPRRRYRDDNRDRD---RDRRRSRSRSRDRYDRD---RY 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           R R++D RR+SRS   R  SPDY K RGRGRY DERRSRSRSRS S S        RS+D
Sbjct: 181 RGRDKDDRRQSRS---RSASPDYYKSRGRGRYDDERRSRSRSRSRSLS--------RSMD 240

Query: 241 SASPGRQSPSPRRSASPQRSPS------PRGESAERNGDGGRSPTSRSVSPRGQPADSRS 300
           SASP R+SP PR SASP+RSPS      PRGES +     GRSP  RSVSPRG+ +DSRS
Sbjct: 241 SASP-RRSPPPRHSASPRRSPSPRRSLTPRGESPDGRSRDGRSPV-RSVSPRGRRSDSRS 269

Query: 301 PSQPNSDVD 304
           PS  NSDVD
Sbjct: 301 PSPRNSDVD 269

[Close]
BLAST of CmaCh19G002560 vs. NCBI nr
Match: gi|802666494|ref|XP_012081226.1| (PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas])

HSP 1 Score: 332.4 bits (851), Expect = 8.4e-88
Identity = 204/303 (67.33%), Postives = 227/303 (74.92%), Query Frame = 1 

Query: 1   MSHFGRSGPPDIADTYSLLVLNITFRTTADDLYPLFHKYGKVVDIFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDL+PLF KYGKVVDIFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAVERLDGTPGTLFVSCCLILSFSSSSGSIVVDGREITVQFAKYGPNAE 120
           FVRYKYADEAQKAV+RLDG                      VVDGREITVQFAKYGPNAE
Sbjct: 61  FVRYKYADEAQKAVDRLDGR---------------------VVDGREITVQFAKYGPNAE 120

Query: 121 RIHKGKVSESFPKSRNRSRSRSPRRRHRDDHRDRDYRRRSRSRSRSRSLDRIDHDRRGRE 180
           RIHKG++ E  P+SRN+SRSRSPRRR+RDD++DRDYRR    RSRSRSLDR + D   + 
Sbjct: 121 RIHKGRIIEPVPRSRNKSRSRSPRRRYRDDYKDRDYRR----RSRSRSLDRYERD---KG 180

Query: 181 RERERDYRRRSRSISPRRPSPDYSKGRGRGRYVDERRSRSRSRSHSYSQTRGRGRGRSVD 240
           R ++RD+RRRSRS   R  SPDYS+GRGRGRY DERRS S                RS D
Sbjct: 181 RGKDRDHRRRSRS---RSASPDYSRGRGRGRYDDERRSSS----------------RSAD 240

Query: 241 SASPGRQSPSPRRSASPQRSPSPRGESAERNGDGGRSPTSRSVSPRGQPADSRSPSQPNS 300
           SASP R+SPSPRRS+SP+++   +GES +R    GRSPT RS SPRG PA SRSPS+ NS
Sbjct: 241 SASP-RRSPSPRRSSSPRKNSPSKGESPDRRSRDGRSPTPRSASPRGWPAASRSPSRRNS 255

Query: 301 DVD 304
           DVD
Sbjct: 301 DVD 255

The following BLAST results are available for this feature:
BLAST of CmaCh19G002560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SC35_ARATH8.5e-6456.44Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana GN=SC35 PE=1 S... [more]
SRSF2_CHICK4.3e-2339.02Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2 PE=2 SV=1[more]
SRSF2_PIG5.6e-2339.02Serine/arginine-rich splicing factor 2 OS=Sus scrofa GN=SRSF2 PE=2 SV=1[more]
SRSF2_BOVIN9.5e-2338.66Serine/arginine-rich splicing factor 2 OS=Bos taurus GN=SRSF2 PE=2 SV=3[more]
SRSF2_RAT9.5e-2338.66Serine/arginine-rich splicing factor 2 OS=Rattus norvegicus GN=Srsf2 PE=1 SV=3[more]
BLAST of CmaCh19G002560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7C0_CUCSA3.9e-11680.84Uncharacterized protein OS=Cucumis sativus GN=Csa_7G062820 PE=4 SV=1[more]
A0A067KEL8_JATCU5.9e-8867.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17056 PE=4 SV=1[more]
A0A059BA96_EUCGR5.9e-8869.26Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00770 PE=4 SV=1[more]
A0A061E2F3_THECC6.5e-8766.45Serine/arginine rich splicing factor, putative isoform 3 OS=Theobroma cacao GN=T... [more]
B9SZR9_RICCO1.1e-8666.01Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_04605... [more]
BLAST of CmaCh19G002560 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64200.14.8e-6556.44 ortholog of human splicing factor SC35[more]
AT3G11400.24.9e-0939.39 eukaryotic translation initiation factor 3G1[more]
AT5G18810.13.2e-0831.16 SC35-like splicing factor 28[more]
AT3G13570.17.0e-0831.89 SC35-like splicing factor 30A[more]
AT4G13860.11.2e-0748.28 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmaCh19G002560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110410|ref|XP_008455210.1|4.3e-11681.17PREDICTED: serine/arginine-rich splicing factor 2 isoform X2 [Cucumis melo][more]
gi|659110407|ref|XP_008455209.1|4.3e-11681.17PREDICTED: serine/arginine-rich splicing factor 2 isoform X1 [Cucumis melo][more]
gi|778724346|ref|XP_004136874.2|5.6e-11680.84PREDICTED: serine/arginine-rich splicing factor SC35 [Cucumis sativus][more]
gi|702390162|ref|XP_010065585.1|8.4e-8869.26PREDICTED: serine/arginine-rich splicing factor SC35-like isoform X2 [Eucalyptus... [more]
gi|802666494|ref|XP_012081226.1|8.4e-8867.33PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0008150 biological_process
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0016607 nuclear speck
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G002560.1CmaCh19G002560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..80
score: 8.7
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..93
score: 2.2
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 16..115
score: 1
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 7..140
score: 4.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 9..85
score: 1.88
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 1..80
score: 2.0E-117coord: 219..301
score: 2.0E-117coord: 102..197
score: 2.0E
NoneNo IPR availablePANTHERPTHR23147:SF10SUBFAMILY NOT NAMEDcoord: 1..80
score: 2.0E-117coord: 102..197
score: 2.0E-117coord: 219..301
score: 2.0E