CmaCh19G000750 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G000750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nucleic acid binding protein, putative
Location	Cma_Chr19 : 433362 .. 434065 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACATCAAGAGCCGGCGAAGTAATGGCTGTCTCATCACAACCAAAAAAACAATAAAATAAAAATTCTTGCTAAGACTTTTTCTCATTTGTTCTTCTTATAGATCTTGGTATAGACAATACCAAAGTTGGGGGTAGGCAAAATCATCCCCTATGAACCCTAACCCTATTCCCACCGCCTCCGTCATCGTCACCGCCACCGCCACTGCCACCGCCACCTCCAATGAAGATCCAAGCTCAAAAACAACGACCGAAGAGACCGACCAAATCAGCAACCAAATGGGTAGTGGGCGCTCCTACGAATGTGTATTTTGCAAACGAGGATTCACGACAGCTCAAGCCCTTGGCGGACACATGAATATCCACCGTAAAGATCGTGTCAAAGCCAAAACTACTTCTCCCTCTAAGCCCGAACTCTTCAATAACCATCCTTCGCACCAGCCTTTTCAAACCTATTTCCCCCCTTCTTCCTCTTGGTATTTGGGTTCTTCTACTACGCCACCCCATGATCATCAATTCTCGAACAACACCAACAATCCTCAATATTTGAATGCTTTCAACATGAGCCTGGCCTCGCAATCGTCGCCTGCCCTTTCTTCGACCGATCGTCGAGACAAGAGATCATATGACAACAGTGGTGAGAACGATGATGATAATCATGATGAACTTGATTTGGAGCTTCGACTCGGCCATGATCGGTAG

mRNA sequence

ATGAATACATCAAGAGCCGGCGAAGCAAAATCATCCCCTATGAACCCTAACCCTATTCCCACCGCCTCCGTCATCGTCACCGCCACCGCCACTGCCACCGCCACCTCCAATGAAGATCCAAGCTCAAAAACAACGACCGAAGAGACCGACCAAATCAGCAACCAAATGGGTAGTGGGCGCTCCTACGAATGTGTATTTTGCAAACGAGGATTCACGACAGCTCAAGCCCTTGGCGGACACATGAATATCCACCGTAAAGATCGTGTCAAAGCCAAAACTACTTCTCCCTCTAAGCCCGAACTCTTCAATAACCATCCTTCGCACCAGCCTTTTCAAACCTATTTCCCCCCTTCTTCCTCTTGGTATTTGGGTTCTTCTACTACGCCACCCCATGATCATCAATTCTCGAACAACACCAACAATCCTCAATATTTGAATGCTTTCAACATGAGCCTGGCCTCGCAATCGTCGCCTGCCCTTTCTTCGACCGATCGTCGAGACAAGAGATCATATGACAACAGTGGTGAGAACGATGATGATAATCATGATGAACTTGATTTGGAGCTTCGACTCGGCCATGATCGGTAG

Coding sequence (CDS)

ATGAATACATCAAGAGCCGGCGAAGCAAAATCATCCCCTATGAACCCTAACCCTATTCCCACCGCCTCCGTCATCGTCACCGCCACCGCCACTGCCACCGCCACCTCCAATGAAGATCCAAGCTCAAAAACAACGACCGAAGAGACCGACCAAATCAGCAACCAAATGGGTAGTGGGCGCTCCTACGAATGTGTATTTTGCAAACGAGGATTCACGACAGCTCAAGCCCTTGGCGGACACATGAATATCCACCGTAAAGATCGTGTCAAAGCCAAAACTACTTCTCCCTCTAAGCCCGAACTCTTCAATAACCATCCTTCGCACCAGCCTTTTCAAACCTATTTCCCCCCTTCTTCCTCTTGGTATTTGGGTTCTTCTACTACGCCACCCCATGATCATCAATTCTCGAACAACACCAACAATCCTCAATATTTGAATGCTTTCAACATGAGCCTGGCCTCGCAATCGTCGCCTGCCCTTTCTTCGACCGATCGTCGAGACAAGAGATCATATGACAACAGTGGTGAGAACGATGATGATAATCATGATGAACTTGATTTGGAGCTTCGACTCGGCCATGATCGGTAG

Protein sequence

MNTSRAGEAKSSPMNPNPIPTASVIVTATATATATSNEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTSPSKPELFNNHPSHQPFQTYFPPSSSWYLGSSTTPPHDHQFSNNTNNPQYLNAFNMSLASQSSPALSSTDRRDKRSYDNSGENDDDNHDELDLELRLGHDR

Homology

[Close]

BLAST of CmaCh19G000750 vs. Swiss-Prot
Match: RBE_ARATH (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 7.8e-07
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 60 RSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTSPS 98
          RSY C FC R F +AQALGGHMN+HR+DR + K  S S
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLS 90

[Close]

BLAST of CmaCh19G000750 vs. Swiss-Prot
Match: SUP_ARATH (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 54/158 (34.18%), Postives = 71/158 (44.94%), Query Frame = 1


Query: 60  RSYECVFCKRGFTTAQALGGHMNIHRKDRVK-------AKTTSPSKPELFNNH------- 119
           RSY C FCKR F +AQALGGHMN+HR+DR +       + +++PS P    N+       
Sbjct: 45  RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSSTPSPPYPNPNYSYSTMAN 104

Query: 120 ---PSHQP---FQTYFPPSSSWY---LGSSTTPPHDHQFSN--NTNNPQYLNAFNMSLAS 179
              P H P   F T  PPSS  Y   L  S +P   H   N   T     L     +   
Sbjct: 105 SPPPHHSPLTLFPTLSPPSSPRYRAGLIRSLSPKSKHTPENACKTKKSSLLVEAGEATRF 164

Query: 180 QSSPALSSTDRRDKRSYDNSGENDDDNHDELDLELRLG 193
            S  A       +  S +      +++  +LDLELRLG
Sbjct: 165 TSKDACKILRNDEIISLELEIGLINESEQDLDLELRLG 202

[Close]

BLAST of CmaCh19G000750 vs. Swiss-Prot
Match: TAC1_ARATH (Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 48/159 (30.19%), Postives = 73/159 (45.91%), Query Frame = 1


Query: 37  NEDPSSKTTTEETDQ-ISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVK--AKT 96
           N D  S + ++ + Q + + +   RSY C FC RGF+ AQALGGHMNIHR+DR K   K 
Sbjct: 9   NADDCSDSISKNSHQGVDDSLNQSRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQKL 68

Query: 97  TSPSKPELFNNHPSHQPFQTYFPPSSSWYLGSSTTPPHDHQFSNNTNNPQYLNAFNMSLA 156
              +K ++     + +               + T   HD    N+ +  Q L  +     
Sbjct: 69  MEDNKDDVVAESDASEVVSLDLNEQQQQQGEALTCDDHDQYVDNDISPKQKLEFW----V 128

Query: 157 SQSSPALSSTDRRDKRSYDNSGENDDDNHDELDLELRLG 193
            +S    +   +  + S D S  +   + + LDLELRLG
Sbjct: 129 QESKLDTNDHGKVTEASIDGSSSSHHRDIEVLDLELRLG 163

[Close]

BLAST of CmaCh19G000750 vs. TrEMBL
Match: A0A0A0LD93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426920 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.7e-32
Identity = 81/129 (62.79%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 14  MNPNPIPTASVIVTATATATATSNEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTT 73
           M+P+ IPT     T T  AT T+++D SSK TTE+TDQI+N+MGSGRSYECVFCKRGFTT
Sbjct: 1   MDPDHIPT-----TTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTT 60

Query: 74  AQALGGHMNIHRKDRVKAKTTSPSKPELFNNHPS-----------------HQPFQTYFP 126
           AQALGGHMNIHRKDRVK K  +PSKPE F NH S                 HQ FQTYFP
Sbjct: 61  AQALGGHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFP 120

[Close]

BLAST of CmaCh19G000750 vs. TrEMBL
Match: B9H8J6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24290g PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 83/186 (44.62%), Postives = 101/186 (54.30%), Query Frame = 1


Query: 37  NEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTS- 96
           +ED  S +  E TD+     G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++ +S 
Sbjct: 8   DEDSKSSSDEEITDRSYQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 97  -----------PS---KPELFNNHPSHQP--------FQTYFPPSSSWYLGSSTTPPHDH 156
                      PS    P L  ++P+H P        +QT+FP SS+W +GS     H+ 
Sbjct: 68  PSFSSKVDEDFPSFRGYPPL-QSYPAHYPTPHEVHTNYQTFFPLSSTWGIGSPYAQQHNG 127

Query: 157 QFSNNTNNPQYLNAFNM-----SLASQSSPALSSTDRRDKRSYDNSGENDDDNHDELDLE 195
            F   T  PQ+L  F       SL+ Q  P  S  D   K   +   E DDD    LDLE
Sbjct: 128 DFYAQT--PQHLYPFGEDICRGSLSQQIDP--SHVDDNTKEKIEEGSEADDD----LDLE 184

[Close]

BLAST of CmaCh19G000750 vs. TrEMBL
Match: A0A0D2P8X6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G144000 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 73/184 (39.67%), Postives = 100/184 (54.35%), Query Frame = 1


Query: 35  TSNEDPSSKTTTEETD---QISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKA 94
           T+++   SK+++EE+D   Q ++ +GSGRSYECVFCKRGFTTAQALGGHMNIHRKDR K+
Sbjct: 3   TNHQHEDSKSSSEESDRSEQSNDDVGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKS 62

Query: 95  ---------------------KTTSPSKPELFNNHPSHQPFQTYFPPSSSWYLGSSTTPP 154
                                +++S   P + +  P +  +Q +FP SS W       P 
Sbjct: 63  SRPNSVPIVSGKVDDENYASLRSSSSYLPIIQSYQPHYVSYQAFFPASSGWDFRPPHPPH 122

Query: 155 HDHQFSNNTNNPQYLNAFNMSLASQSSPALSSTDRRDKRSYDNSGENDDDNHDELDLELR 195
            D  F NN++  +YLN F      ++          D+    + G + D   DELDLELR
Sbjct: 123 GDELFVNNSS--RYLNPFREEDWPRNLNLRIGPSHVDENKKIDHGSSQD---DELDLELR 181

[Close]

BLAST of CmaCh19G000750 vs. TrEMBL
Match: B9GS39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04250g PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-19
Identity = 80/188 (42.55%), Postives = 99/188 (52.66%), Query Frame = 1


Query: 37  NEDPSSKTTTEE-TDQISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTS 96
           +ED  S +  EE TD+     G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++ +S
Sbjct: 7   DEDSKSSSDEEEITDRSDQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSS 66

Query: 97  -PS---------------------KPELFNNHPSHQPFQTYFPPSSSWYLGSSTTPPHDH 156
            PS                      P     H  H  +QT+FP S++W +GS     H+ 
Sbjct: 67  VPSLSSKVDEDYASFQGYPPIQSYPPHYPTPHEVHINYQTFFPASTTWGIGSPYAQQHNG 126

Query: 157 QFSNNTNNPQYLNAF----NMSLASQSSPALSSTDRRDKRSYDNSGENDDDN---HDELD 195
            F     +P +L  F      SL+ Q+ P  S  D       DN+ E  +D     DELD
Sbjct: 127 DF--YVQSPHHLYPFGDDWRRSLSLQTGP--SHVD-------DNTKEKIEDGIGADDELD 183

[Close]

BLAST of CmaCh19G000750 vs. TrEMBL
Match: A0A061DQ22_THECC (C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_004127 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-18
Identity = 76/190 (40.00%), Postives = 98/190 (51.58%), Query Frame = 1


Query: 36  SNEDPSSKTTTEETD---QISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAK 95
           +N+   SK+++EETD   Q ++ MG+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++
Sbjct: 3   ANQLEDSKSSSEETDRSEQSNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSR 62

Query: 96  TTS-------------------------PSKPELFNNHPSHQPFQTYFPPSSSWYLGSST 155
            +S                          S+P        H  +Q +FP       G   
Sbjct: 63  PSSVPIVSGKADENLNYASLMSYSYPPIQSQPHYSMVPEVHVSYQAFFPAP-----GWGF 122

Query: 156 TPPHDHQFSN-NTNNPQYLNAFNMSLASQSSPAL--SSTDRRDKRSYDNSGENDDDNHDE 195
            PPH H       +N Q+LN F     S  +  +  S  D  +K++  +S E      DE
Sbjct: 123 RPPHTHHSDELYVDNSQHLNPFGEDWPSSLNLRIGPSRVDDENKKTDGSSQE------DE 181

[Close]

BLAST of CmaCh19G000750 vs. TAIR10
Match: AT5G43540.1 (AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 9.4e-11
Identity = 36/74 (48.65%), Postives = 45/74 (60.81%), Query Frame = 1


Query: 41  SSKTTTEETDQISNQMGSG--------RSYECVFCKRGFTTAQALGGHMNIHRKDRV-KA 100
           SS +T+ ET  + ++  S         R YEC FCKRGFT AQALGGHMNIHR+DR+ KA
Sbjct: 6   SSSSTSSETGAVRHRRTSSSSVSTVTRRMYECTFCKRGFTNAQALGGHMNIHRRDRLNKA 65

Query: 101 KTTSPSKPELFNNH 106
           K  + +   L   H
Sbjct: 66  KVQNDADVALSQTH 79

[Close]

BLAST of CmaCh19G000750 vs. TAIR10
Match: AT3G53820.1 (AT3G53820.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1


Query: 60 RSYECVFCKRGFTTAQALGGHMNIHRKDRVKAK 93
          R Y C FC+RGF+ AQALGGHMNIHRKDR K +
Sbjct: 19 RPYICEFCERGFSNAQALGGHMNIHRKDRAKLR 51

[Close]

BLAST of CmaCh19G000750 vs. TAIR10
Match: AT3G23140.1 (AT3G23140.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 57/176 (32.39%), Postives = 76/176 (43.18%), Query Frame = 1


Query: 51  QISNQMGSG---RSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTT------------- 110
           QI +  GSG   R+Y+C  CKRGFT  QALGGH NIHR++R +  ++             
Sbjct: 7   QIDSGSGSGENRRTYDCDICKRGFTNPQALGGHNNIHRRERERYPSSSSSSHSFPFSLPL 66

Query: 111 ---SPSKPELFNNHPSHQPFQTYFPPSSSWYLGSSTTPPHDHQFSNNTNNPQYLNAFNMS 170
              SPS    F N P       YFP   S YL   + PP      N ++N QY  + + S
Sbjct: 67  PSQSPSSSTNFTNPP------PYFPTIES-YLHQGSQPP-----INPSHNTQYFGSSSSS 126

Query: 171 LASQSSPALSSTDRRDKRSYDNSGENDDDNHD------------ELDLELRLGHDR 196
                    +S D        +  E+DD +              +LDL+LRLG  R
Sbjct: 127 RGGGRFAQGASHDLNLSLGLGSMNEDDDTHRSPPETGGSQPQDGDLDLDLRLGGHR 170

[Close]

BLAST of CmaCh19G000750 vs. TAIR10
Match: AT2G37740.1 (AT2G37740.1 zinc-finger protein 10)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-08
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 36  SNEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTT- 95
           SN++ S +      D  +  +   RSY C FC+R F +AQALGGHMN+HR+DR + K   
Sbjct: 13  SNKESSWEELAFAEDDAAGSLWPPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLKQAD 72

Query: 96  -------SPSKPELFNNHPSHQ 110
                  S S PE    +PSH+
Sbjct: 73  DQYLFPKSSSSPE----YPSHK 90

[Close]

BLAST of CmaCh19G000750 vs. TAIR10
Match: AT5G06070.1 (AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-08
Identity = 24/38 (63.16%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 60 RSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTSPS 98
          RSY C FC R F +AQALGGHMN+HR+DR + K  S S
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLS 90

[Close]

BLAST of CmaCh19G000750 vs. NCBI nr
Match: gi|659109033|ref|XP_008454512.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 3.8e-54
Identity = 130/208 (62.50%), Postives = 150/208 (72.12%), Query Frame = 1


Query: 14  MNPNPIPTASVIVTATATATATSNEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTT 73
           M+P+ IPT       T T  AT+++  SSKTTTEETDQI+N+MGSGRSYECVFCKRGFTT
Sbjct: 1   MDPDLIPT-------TTTVAATTDQHQSSKTTTEETDQINNEMGSGRSYECVFCKRGFTT 60

Query: 74  AQALGGHMNIHRKDRVKAKTTSPSKPELFNNHPS-----------------HQPFQTYFP 133
           AQALGGHMNIHRKDRVK K  +PSKPE F+NH S                 HQ FQTYFP
Sbjct: 61  AQALGGHMNIHRKDRVKTKPNTPSKPEPFSNHSSNLRPMLTTTAAATTISHHQSFQTYFP 120

Query: 134 PSSSWYLGSST-TPPHDHQFSNNTNNPQYLNAF--------NMSLASQSSPALSSTDRRD 193
            SS+W LG++T +PPHDHQFS   NNPQ LN F        NMSLASQSSP L+ +DRRD
Sbjct: 121 TSSTWCLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDRRD 180

Query: 194 KRSYDNSGENDDDNHDELDLELRLGHDR 196
           KRS D +G +D+D+ +ELDLELRLGHDR
Sbjct: 181 KRS-DRNGGDDEDDDEELDLELRLGHDR 200

[Close]

BLAST of CmaCh19G000750 vs. NCBI nr
Match: gi|449462920|ref|XP_004149183.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 8.5e-54
Identity = 130/208 (62.50%), Postives = 148/208 (71.15%), Query Frame = 1


Query: 14  MNPNPIPTASVIVTATATATATSNEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTT 73
           M+P+ IPT     T T  AT T+++D SSK TTE+TDQI+N+MGSGRSYECVFCKRGFTT
Sbjct: 1   MDPDHIPT-----TTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTT 60

Query: 74  AQALGGHMNIHRKDRVKAKTTSPSKPELFNNHPS-----------------HQPFQTYFP 133
           AQALGGHMNIHRKDRVK K  +PSKPE F NH S                 HQ FQTYFP
Sbjct: 61  AQALGGHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFP 120

Query: 134 PSSSWYLGSST-TPPHDHQFSNNTNNPQYLNAF--------NMSLASQSSPALSSTDRRD 193
            SS+W LG++T +PPHDHQFS   NNPQ LN F        NMSLASQSSP L+ +D RD
Sbjct: 121 TSSTWCLGTTTSSPPHDHQFSYVHNNPQVLNTFKDQNWTTTNMSLASQSSPTLALSDGRD 180

Query: 194 KRSYDNSGENDDDNHDELDLELRLGHDR 196
           KRS D +G +DDD  +ELDLELRLGHDR
Sbjct: 181 KRS-DGNGGDDDDGDEELDLELRLGHDR 202

[Close]

BLAST of CmaCh19G000750 vs. NCBI nr
Match: gi|700202873|gb|KGN58006.1| (hypothetical protein Csa_3G426920 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 5.4e-32
Identity = 81/129 (62.79%), Postives = 91/129 (70.54%), Query Frame = 1


Query: 14  MNPNPIPTASVIVTATATATATSNEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTT 73
           M+P+ IPT     T T  AT T+++D SSK TTE+TDQI+N+MGSGRSYECVFCKRGFTT
Sbjct: 1   MDPDHIPT-----TTTIAATTTTDQDQSSKPTTEDTDQINNEMGSGRSYECVFCKRGFTT 60

Query: 74  AQALGGHMNIHRKDRVKAKTTSPSKPELFNNHPS-----------------HQPFQTYFP 126
           AQALGGHMNIHRKDRVK K  +PSKPE F NH S                 HQ FQTYFP
Sbjct: 61  AQALGGHMNIHRKDRVKNKPNTPSKPEPFTNHSSTLRPMLTTTAAVTTVSHHQSFQTYFP 120

[Close]

BLAST of CmaCh19G000750 vs. NCBI nr
Match: gi|743839717|ref|XP_011026015.1| (PREDICTED: transcriptional regulator SUPERMAN-like [Populus euphratica])

HSP 1 Score: 112.5 bits (280), Expect = 8.6e-22
Identity = 81/185 (43.78%), Postives = 97/185 (52.43%), Query Frame = 1


Query: 37  NEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTS- 96
           +ED  S +  E TD+     G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++ +S 
Sbjct: 8   DEDSKSSSDEEITDRSYQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 97  -----------PS----------KPELFNNHPSHQPFQTYFPPSSSWYLGSSTTPPHDHQ 156
                      PS           P     H  H  +QT+FP SS+W +GS     H+  
Sbjct: 68  PSFSSKVDEDFPSFRGYPPLQSYPPHYPTTHEVHTNYQTFFPLSSTWGMGSPYAQQHNGD 127

Query: 157 FSNNTNNPQYLNAFNM-----SLASQSSPALSSTDRRDKRSYDNSGENDDDNHDELDLEL 195
           F   T  PQ+L  F       SL+ Q  P  S  D   K   ++  E DDD    LDLEL
Sbjct: 128 FYAQT--PQHLYPFGEDIRRGSLSQQIDP--SHVDDNTKEKIEDGSEADDD----LDLEL 184

[Close]

BLAST of CmaCh19G000750 vs. NCBI nr
Match: gi|224082768|ref|XP_002306831.1| (hypothetical protein POPTR_0005s24290g [Populus trichocarpa])

HSP 1 Score: 111.3 bits (277), Expect = 1.9e-21
Identity = 83/186 (44.62%), Postives = 101/186 (54.30%), Query Frame = 1


Query: 37  NEDPSSKTTTEETDQISNQMGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRVKAKTTS- 96
           +ED  S +  E TD+     G+GRSYECVFCKRGFTTAQALGGHMNIHRKDR K++ +S 
Sbjct: 8   DEDSKSSSDEEITDRSYQDTGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSRPSSV 67

Query: 97  -----------PS---KPELFNNHPSHQP--------FQTYFPPSSSWYLGSSTTPPHDH 156
                      PS    P L  ++P+H P        +QT+FP SS+W +GS     H+ 
Sbjct: 68  PSFSSKVDEDFPSFRGYPPL-QSYPAHYPTPHEVHTNYQTFFPLSSTWGIGSPYAQQHNG 127

Query: 157 QFSNNTNNPQYLNAFNM-----SLASQSSPALSSTDRRDKRSYDNSGENDDDNHDELDLE 195
            F   T  PQ+L  F       SL+ Q  P  S  D   K   +   E DDD    LDLE
Sbjct: 128 DFYAQT--PQHLYPFGEDICRGSLSQQIDP--SHVDDNTKEKIEEGSEADDD----LDLE 184

The following BLAST results are available for this feature:

BLAST of CmaCh19G000750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBE_ARATH	7.8e-07	63.16	Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana GN=RBE PE...	[more]
SUP_ARATH	1.0e-06	34.18	Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1	[more]
TAC1_ARATH	1.3e-06	30.19	Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1	[more]

BLAST of CmaCh19G000750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD93_CUCSA	3.7e-32	62.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G426920 PE=4 SV=1	[more]
B9H8J6_POPTR	1.3e-21	44.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24290g PE=4 SV=1	[more]
A0A0D2P8X6_GOSRA	2.1e-19	39.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G144000 PE=4 SV=1	[more]
B9GS39_POPTR	3.6e-19	42.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s04250g PE=4 SV=1	[more]
A0A061DQ22_THECC	5.2e-18	40.00	C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=T...	[more]

BLAST of CmaCh19G000750 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G43540.1	9.4e-11	48.65	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G53820.1	1.2e-08	72.73	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G23140.1	1.2e-08	32.39	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT2G37740.1	2.0e-08	40.24	zinc-finger protein 10	[more]
AT5G06070.1	4.4e-08	63.16	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CmaCh19G000750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109033\|ref\|XP_008454512.1\|	3.8e-54	62.50	PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]	[more]
gi\|449462920\|ref\|XP_004149183.1\|	8.5e-54	62.50	PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis sativus]	[more]
gi\|700202873\|gb\|KGN58006.1\|	5.4e-32	62.79	hypothetical protein Csa_3G426920 [Cucumis sativus]	[more]
gi\|743839717\|ref\|XP_011026015.1\|	8.6e-22	43.78	PREDICTED: transcriptional regulator SUPERMAN-like [Populus euphratica]	[more]
gi\|224082768\|ref\|XP_002306831.1\|	1.9e-21	44.62	hypothetical protein POPTR_0005s24290g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G000750.1	CmaCh19G000750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 64..84 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 62..89 score: 10
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain	GENE3D	G3DSA:3.30.160.60		coord: 60..88 score: 4.
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 36..194 score: 4.3
None	No IPR available	PANTHER	PTHR26374:SF211	SUBFAMILY NOT NAMED	coord: 36..194 score: 4.3
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 59..88 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G000750	Cucsa.383790	Cucumber (Gy14) v1	cgycmaB1056
CmaCh19G000750	Cla021551	Watermelon (97103) v1	cmawmB495
CmaCh19G000750	Cla005997	Watermelon (97103) v1	cmawmB491
CmaCh19G000750	Csa2G190770	Cucumber (Chinese Long) v2	cmacuB508
CmaCh19G000750	MELO3C006452	Melon (DHL92) v3.5.1	cmameB482
CmaCh19G000750	ClCG07G000870	Watermelon (Charleston Gray)	cmawcgB467
CmaCh19G000750	ClCG06G006790	Watermelon (Charleston Gray)	cmawcgB466
CmaCh19G000750	CSPI02G10560	Wild cucumber (PI 183967)	cmacpiB515
CmaCh19G000750	CmoCh14G018290	Cucurbita moschata (Rifu)	cmacmoB500
CmaCh19G000750	CmoCh06G013470	Cucurbita moschata (Rifu)	cmacmoB532
CmaCh19G000750	CmoCh08G010730	Cucurbita moschata (Rifu)	cmacmoB537
CmaCh19G000750	CmoCh19G000860	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G000750	Lsi05G009980	Bottle gourd (USVL1VR-Ls)	cmalsiB486
CmaCh19G000750	Lsi09G012530	Bottle gourd (USVL1VR-Ls)	cmalsiB464
CmaCh19G000750	Cp4.1LG05g01480	Cucurbita pepo (Zucchini)	cmacpeB543
CmaCh19G000750	Cp4.1LG15g00560	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G000750	Cp4.1LG17g01780	Cucurbita pepo (Zucchini)	cmacpeB528
CmaCh19G000750	Cp4.1LG03g10160	Cucurbita pepo (Zucchini)	cmacpeB535
CmaCh19G000750	Cp4.1LG08g03600	Cucurbita pepo (Zucchini)	cmacpeB554
CmaCh19G000750	MELO3C026786.2	Melon (DHL92) v3.6.1	cmamedB548
CmaCh19G000750	MELO3C006452.2	Melon (DHL92) v3.6.1	cmamedB559
CmaCh19G000750	CsaV3_3G012400	Cucumber (Chinese Long) v3	cmacucB0623
CmaCh19G000750	CsaV3_2G012980	Cucumber (Chinese Long) v3	cmacucB0611
CmaCh19G000750	Cla97C07G129160	Watermelon (97103) v2	cmawmbB540
CmaCh19G000750	Cla97C06G116410	Watermelon (97103) v2	cmawmbB539
CmaCh19G000750	Bhi05G000172	Wax gourd	cmawgoB0653
CmaCh19G000750	CsGy2G010570	Cucumber (Gy14) v2	cgybcmaB214
CmaCh19G000750	Carg10949	Silver-seed gourd	carcmaB1491
CmaCh19G000750	Carg06205	Silver-seed gourd	carcmaB1322
CmaCh19G000750	Carg08975	Silver-seed gourd	carcmaB1082
CmaCh19G000750	Carg16866	Silver-seed gourd	carcmaB1049
CmaCh19G000750	Carg16575	Silver-seed gourd	carcmaB0327

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh19G000750	CmaCh14G017920	Cucurbita maxima (Rimu)	cmacmaB259
CmaCh19G000750	CmaCh02G017590	Cucurbita maxima (Rimu)	cmacmaB450
CmaCh19G000750	CmaCh08G010980	Cucurbita maxima (Rimu)	cmacmaB467

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G000750	Cucurbita moschata (Rifu)	cmacmoB523
CmaCh19G000750	Watermelon (Charleston Gray)	cmawcgB464
CmaCh19G000750	Watermelon (97103) v1	cmawmB507
CmaCh19G000750	Cucurbita pepo (Zucchini)	cmacpeB519