CmaCh19G000490 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G000490
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSmall nuclear ribonucleoprotein Sm D1
LocationCma_Chr19 : 275754 .. 280026 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAAATTTCCTCTCCCGCTTCGCTTGTTTGTCTGTGTTTGAAACCCTACATTCATTTCCACTGCAATCATGAAGCTCGTTAGGTATGCTCTTACGCTCTTCTCTTTTCTATTTTCGATCTCCTTCTTCTCGATCTATTCGCTGTTCTCTACCCAGAATGGCCGTTTTTATGTTTAGAAACTTGGATTTTGGTGAATGTACAGGTTTTTGATGAAGCTGAACAATGAGACGGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTATCCTTCTCACTTTCACTCGCAGCCACGCACATTGATATTTTCTTAATCTTGTTAAACCCTAGATTTACCAACTTTGTAGGAGAGCTTTTTTTAACTTCCAACTTCTGTTTTGTTTTCTTCTTTGAACTCCACTGTAGTGCAAGTCGTAGAATGTTTCAGTTGGAAGGGATAGTTGGAATATGGGTTCTACTGTCAATTTGGAGTGGTTTATGATTTATCTTCAACCTTCTTGTTCTTGATAATTTGGCTTACATAGATTTTTCTCTGCTACATTGCTGCTAGAAATTTAATTAATGTTTCGTTTAAAATTGTGTGTGGCTATTTTTCTTGCGATGGCTGAAGTACATTGCTACTATTAGTCACGCCAAGGTTTAGTCTGTCCGCCAGTGTACGATTATCGTTTTTCTTGCTTTTGTCTCACAATTATCTCCCAACATTTGTTCCTGCAATTGTGTAGTTGTGAAAGCTAACTGAAGAGTTCTGGCAAGCGCGCGCTTGGAGAACCGCTATCCCACTCCCATTTTGAATCTTAAAAAATAGTACTAGCCCACTGCTAGTAGATATTGTCCTCTTTGGGTTTTCCCTTTCGAGCTTCCTCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAAGTTTTCACACCCTTATAAAGAATGCTTTGTTTTCCTTCCCAACCAGTGTGGGATCTCACAATCCACCCCCCTTCGGGGGCCCAACGTCTTCGTTGGCACTCGTTCCCTTCTCCAATCAATGTGGACCCCCAATCCACCCCCCTTCGAGGCTTAGCCTCCTTGCTGCCACATTGTCCGATTTCTAGCTCTGATACCATTTGTAACAATCTAAGTCCACCACTAGCAAATAATGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCTTCTCAAGGTTTTTAAAACGCTTCTTCTAGGGAGAGGTTTTTACACTTATAAATAATGCTTCGTTCTCCTCCTCAACCGACGTGGGATCTTCAACTCTCATCATTTAAAAAAAAAAACTAGTATTAAACTCATAGGTTGCTTACGGGCAACTAAATTCCTTGTCATCTAAGCATTGGGAGGATGCGGTGTTTTCTCTGTATAGTTTTTATTTTTATCATTCTTAACAAACAAATCAATTTGAACTATTGACTACTGTCTACTGATGCTGAATGTCCATTCTATTTCATGGCATATCAGTAGATTTAAACAAATCTTTTAAATGCCCTCTCACTTTTATATGGACTGATTCCTACCATTCCTTCTTTCCCCTTTGTTTTGAAGGGGTTGTTTCTTAAACCAAGTGAATATACTTCAACTTTTAACTTGAACTGTTTTTCACATGCAGTAGAATGGCATCAACTTAGTCTGATTAAAAACTAACTTCTGCTGAACACCAGTATTTTTGGATTGTGTTGCTCATATGCCATTCTTCGGTGCATTATGATATATGCCATCCTTGCGTTTTGGGTTTTGTCTTCTTCATCGTTTGAAACGTAATAATAGTTACCATCCTTAAATGCAAAAACCCTTGCATTTAGTGTTTTTCTTCTTTATTAATTAATAAAAAAATTATATATAGTGCACATTACAAAAGAAAGGTCTTGCTTTTTTATTTTTTTGCACCTTGCACGACATAAGGCTATTGTTCCCTGAGCTTTAAAAAACACTGATTACAATAGAATATGAATATCTTGTATTTGAATAACCATTGTAAAATGTTTGCGATACATTACAAATAGAATCTATAATAGATTATTTTTTCCTTAAGAATCCATAGAAGGACAATTCCAAGAGATCTTAGCCTTAAATTTAAGCCATCAGGCCGTGAGGGCTTCCAAGGAAAATCGTCAACCAAGCTGGGTTGGCATAAACAGAAACCAGGCTCATTGAACATGAAAGACCACCTCCTATAGAAAAAGGTCAGTGGAGGTAATGGTAATTTTGGGTTTCATCATAGGAATAGCAGAGGAACAAACCAGGGAGAGAACCCAATTTTGGAACTTTTTTTGAGCCGCTTGGGGAGTTGAGGCTTCTTTAAGTAAGTGACCACACAATCATATTAACCTTCCTGGGGACGTCAAACTTCCAAACTGATTTACCCAAAGGAGTTTTCAGCTTTAGCAAGGTCATAGAGAGTTTAATGAAAGTGATTTAGAGGAGAAGCAGTTGAATGAATCAATGTATTCTACCAGTCTTGGCCAGCTTCTAATTGAAACGTATCAATGTTTCCTATAAAGGCTATACAACTACCAATTTCTCTATGAAAAGAGCGAGCAAGCACTCCACAATTATCCCCCAATATTACCTATGGTTTTGGTTTAGGCTTCCTTGCCTATCTTTCTGGTTTAACCCCTTGTTGCCAACAATCACTCTTCTCCCTAAGCATTTAAGAATGAGGGCGTTATTTCTCTACTTCTGGAAAGAGCCAATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCCGGAAAGAGCCAATGGAAGGAAAGTCCAACTCCATTTTATTTGGTGCTTCCATTTAACGTATTTCTCTATGCGGCTGCTACTGAAACTAGTTATTTACTCACAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAGTTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATGTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGGCAGCCTTGAGACTTTTCCTCCGGTGGAGGTGAGGTGAAAGCCTCAAGGTGGTATGAAGCATAAGACTCTAATTTAATTAATTTTTTTTTACCAAGTATTGATAAACAAACTTAGTAATCATAAAAAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTATGAAGCATGGACACATATGTCCGGATATGCTTTGGCCATGCTATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTTTAGATTGAATCTTTAAATATTGATCAATCCTAAGTATTAGGATGACATGTTCATCCTCTTGCAGCCAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAATTGACTCAACTATGGATGCTTTTAGTGAAGCTTATTTTATTTTTATGTTTAATTCACATTTTATCTATTAAAAAAACAGACTAATATACCTATATCGACACATATTTTATATAAAAAAACATGTCCCCAAGGTGCTTGTGTCCTACATTTTAAGAATTTGATGTGTCTCAGTGTTTATGTCATTGTCTTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCTTTAACGTCACTACTATTATCGTTAAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTCTTGTGTTTCATAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGATAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAATTGCAGGTACGTGTTGTCCTTGTATTCATGCCTGTACTTATGGTCATTTTCTGCAAGTGAACTTGTGTATGCTGAGTTATATGCTCTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

mRNA sequence

TACAAATTTCCTCTCCCGCTTCGCTTGTTTGTCTGTGTTTGAAACCCTACATTCATTTCCACTGCAATCATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACGGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGATAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAATTGCAGGTACGTGTTGTCCTTGTATTCATGCCTGTACTTATGGTCATTTTCTGCAAGTGAACTTGTGTATGCTGAGTTATATGCTCTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

Coding sequence (CDS)

ATGAAGCTCGTTAGGTTTTTGATGAAGCTGAACAATGAGACGGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCATGGAACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGATAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAAGAAACCAATTGCAGGTACGTGTTGTCCTTGTATTCATGCCTGTACTTATGGTCATTTTCTGCAAGTGAACTTGTGTATGCTGAGTTATATGCTCTACCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGTGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAGTCCPCIHACTYGHFLQVNLCMLSYMLYPLSNVLLMHFYTLLQLQGSLWDVDEDVDVGVVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISCVYYNVIQLFFYD
Homology
[Close]
BLAST of CmaCh19G000490 vs. Swiss-Prot
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

[Close]
BLAST of CmaCh19G000490 vs. Swiss-Prot
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

[Close]
BLAST of CmaCh19G000490 vs. Swiss-Prot
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

[Close]
BLAST of CmaCh19G000490 vs. Swiss-Prot
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.2e-32
Identity = 69/91 (75.82%), Postives = 82/91 (90.11%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 92
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91

[Close]
BLAST of CmaCh19G000490 vs. Swiss-Prot
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=SmD1 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 65/95 (68.42%), Postives = 86/95 (90.53%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRY+ILPDSL LETLL+++TP+ K KK  +G
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSG 95

[Close]
BLAST of CmaCh19G000490 vs. TrEMBL
Match: A0A0A0LD16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851900 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. TrEMBL
Match: F6I591_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01330 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDS+NLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSINLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. TrEMBL
Match: M1BSD7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020134 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. TrEMBL
Match: K4CAT6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. TrEMBL
Match: A0A0V0GXX3_SOLCH (Putative small nuclear ribonucleoprotein Sm D1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. TAIR10
Match: AT3G07590.1 (AT3G07590.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 181.4 bits (459), Expect = 5.7e-46
Identity = 87/95 (91.58%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP+AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 95

[Close]
BLAST of CmaCh19G000490 vs. TAIR10
Match: AT4G02840.2 (AT4G02840.2 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 89/105 (84.76%), Postives = 94/105 (89.52%), Query Frame = 1 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKP AG
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 105

[Close]
BLAST of CmaCh19G000490 vs. NCBI nr
Match: gi|449464778|ref|XP_004150106.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-44
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. NCBI nr
Match: gi|823148065|ref|XP_012473940.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii])

HSP 1 Score: 186.0 bits (471), Expect = 6.5e-44
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. NCBI nr
Match: gi|698486337|ref|XP_009789901.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nicotiana sylvestris])

HSP 1 Score: 186.0 bits (471), Expect = 6.5e-44
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. NCBI nr
Match: gi|225462054|ref|XP_002275736.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis vinifera])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVTMDHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDS+NLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSINLETLLVEETPRVKPKKPTAG 95

[Close]
BLAST of CmaCh19G000490 vs. NCBI nr
Match: gi|460393466|ref|XP_004242330.1| (PREDICTED: small nuclear ribonucleoprotein Sm D1 [Solanum lycopersicum])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 91/95 (95.79%), Postives = 94/95 (98.95%), Query Frame = 1 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPIAG 96
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95

The following BLAST results are available for this feature:
BLAST of CmaCh19G000490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SMD1_BOVIN1.2e-3275.82Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1[more]
SMD1_HUMAN1.2e-3275.82Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1[more]
SMD1_MACFA1.2e-3275.82Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1[more]
SMD1_MOUSE1.2e-3275.82Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=1 SV=1[more]
SMD1_DROME2.0e-3268.42Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=SmD... [more]
BLAST of CmaCh19G000490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD16_CUCSA1.6e-4498.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851900 PE=4 SV=1[more]
F6I591_VITVI7.7e-4496.84Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01330 PE=4 SV=... [more]
M1BSD7_SOLTU7.7e-4495.79Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020134 PE=4 SV=1[more]
K4CAT6_SOLLC7.7e-4495.79Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
A0A0V0GXX3_SOLCH7.7e-4495.79Putative small nuclear ribonucleoprotein Sm D1-like OS=Solanum chacoense PE=4 SV... [more]
BLAST of CmaCh19G000490 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07590.15.7e-4691.58 Small nuclear ribonucleoprotein family protein[more]
AT4G02840.22.4e-4484.76 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmaCh19G000490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464778|ref|XP_004150106.1|2.2e-4498.95PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis sativus][more]
gi|823148065|ref|XP_012473940.1|6.5e-4497.89PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Gossypium raimondii][more]
gi|698486337|ref|XP_009789901.1|6.5e-4496.84PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nicotiana sylvestris][more]
gi|225462054|ref|XP_002275736.1|1.1e-4396.84PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis vinifera][more]
gi|460393466|ref|XP_004242330.1|1.1e-4395.79PREDICTED: small nuclear ribonucleoprotein Sm D1 [Solanum lycopersicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027141LSm4/Sm_D1/D3
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G000490.1CmaCh19G000490.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..69
score: 1.5
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
score: 1.1
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 4..89
score: 6.29
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..92
score: 5.5
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..81
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G000490CmoCh19G000480Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G000490CmoCh02G018520Cucurbita moschata (Rifu)cmacmoB521
CmaCh19G000490Cp4.1LG15g00540Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G000490Cp4.1LG05g01770Cucurbita pepo (Zucchini)cmacpeB550
CmaCh19G000490Carg16849Silver-seed gourdcarcmaB1049
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G000490CmaCh02G018050Cucurbita maxima (Rimu)cmacmaB447
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G000490Cucumber (Chinese Long) v3cmacucB0610
CmaCh19G000490Cucumber (Chinese Long) v3cmacucB0636
CmaCh19G000490Watermelon (97103) v2cmawmbB540
CmaCh19G000490Watermelon (97103) v2cmawmbB542
CmaCh19G000490Watermelon (97103) v2cmawmbB556
CmaCh19G000490Wax gourdcmawgoB0645
CmaCh19G000490Wax gourdcmawgoB0673
CmaCh19G000490Cucurbita maxima (Rimu)cmacmaB361
CmaCh19G000490Cucurbita maxima (Rimu)cmacmaB363
CmaCh19G000490Cucurbita maxima (Rimu)cmacmaB450
CmaCh19G000490Cucurbita maxima (Rimu)cmacmaB465
CmaCh19G000490Cucumber (Gy14) v1cgycmaB0527
CmaCh19G000490Cucurbita moschata (Rifu)cmacmoB506
CmaCh19G000490Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G000490Cucurbita moschata (Rifu)cmacmoB536
CmaCh19G000490Wild cucumber (PI 183967)cmacpiB514
CmaCh19G000490Wild cucumber (PI 183967)cmacpiB530
CmaCh19G000490Cucumber (Chinese Long) v2cmacuB524
CmaCh19G000490Melon (DHL92) v3.5.1cmameB460
CmaCh19G000490Watermelon (Charleston Gray)cmawcgB449
CmaCh19G000490Watermelon (Charleston Gray)cmawcgB467
CmaCh19G000490Watermelon (Charleston Gray)cmawcgB469
CmaCh19G000490Watermelon (97103) v1cmawmB480
CmaCh19G000490Watermelon (97103) v1cmawmB487
CmaCh19G000490Cucurbita pepo (Zucchini)cmacpeB520
CmaCh19G000490Cucurbita pepo (Zucchini)cmacpeB530
CmaCh19G000490Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G000490Bottle gourd (USVL1VR-Ls)cmalsiB478
CmaCh19G000490Bottle gourd (USVL1VR-Ls)cmalsiB486
CmaCh19G000490Bottle gourd (USVL1VR-Ls)cmalsiB491
CmaCh19G000490Cucumber (Gy14) v2cgybcmaB786
CmaCh19G000490Melon (DHL92) v3.6.1cmamedB532
CmaCh19G000490Silver-seed gourdcarcmaB0144