CmaCh18G012180 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G012180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionEthylene-responsive transcription factor 1
LocationCma_Chr18 : 9619192 .. 9619890 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCTTTTCCTTTATAAACTCTTCTCTGTTTTTTCCCCATTTCATTGCATCTGCTTCTGAGTTTGATTCTGATTCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGTACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTGGCTGCCCTCGCCCTTAAAGGCCCTGATGCTTCTCTTAATTTCCCAGACTCTCTCTTATCCTATCACATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCTACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCTGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCCGCAGCTTCTGCCGGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCCCGGATCAAGTCGCTGTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCTAA

mRNA sequence

ATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCTTTTCCTTTATAAACTCTTCTCTGTTTTTTCCCCATTTCATTGCATCTGCTTCTGAGTTTGATTCTGATTCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGTACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTGGCTGCCCTCGCCCTTAAAGGCCCTGATGCTTCTCTTAATTTCCCAGACTCTCTCTTATCCTATCACATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCTACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCTGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCCGCAGCTTCTGCCGGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCCCGGATCAAGTCGCTGTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCTAA

Coding sequence (CDS)

ATGTTGTCCACGAATTCCCCACGGCTTTTACAGCTCTTCCCCTTTTCCTTTATAAACTCTTCTCTGTTTTTTCCCCATTTCATTGCATCTGCTTCTGAGTTTGATTCTGATTCTGATTCTTTCATGTCTGACGATACTCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCGCCACCCCAAGTTCCGTGGAGTCCGCAGCCGAAGTGGCAAATGGGTCTCTGAAATCCGCCAGCCTCGACAGACCACTCGCATTTGGCTTGGTACCTACCCTACTCCTGACATGGCTGCAGCCGCCTACGACGTGGCTGCCCTCGCCCTTAAAGGCCCTGATGCTTCTCTTAATTTCCCAGACTCTCTCTTATCCTATCACATTCCTTCCTCCACTTCCCCTTCTGATATCCGCGCCGCTGCTGCTCTTGCCGCTGCTGCCAGACACCCCTACACTGCTCCTGCTCCTGCTCCTGCTGCACATACCCGCCCTGTTGGTGGGGCTGGGTTTTCCTCTGACGCTACGGCCGCCGCCGCCGCAGCTTCTGCCGGGGAGTTCGTGGACGAGGAAGAGCTACTGAACATGCCCAATTTACTGGTGGACATGGCTGAGGGAATGCTGGTGAGTCCACCCCGGATCAAGTCGCTGTCTTCCGATGACTCTCCCACAAATTCTCCAGGGGATGGATTATGGAGCTACTCCTAA

Protein sequence

MLSTNSPRLLQLFPFSFINSSLFFPHFIASASEFDSDSDSFMSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLWSYS
Homology
[Close]
BLAST of CmaCh18G012180 vs. Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-42
Identity = 110/202 (54.46%), Postives = 133/202 (65.84%), Query Frame = 1 

Query: 30  SASEFDSDSDSFMSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLG 89
           S++   +D ++ M+ DT  S         ++P +RG+R RSGKWVSEIR+P++TTR+WLG
Sbjct: 63  SSTASGNDINTLMATDTDISRRK------KNPVYRGIRCRSGKWVSEIREPKKTTRVWLG 122

Query: 90  TYPTPDMAAAAYDVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPY 149
           TYPTP+MAAAAYDVAALALKG D  LNFPDSL SY IP S+S + IR AAA AAA R   
Sbjct: 123 TYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGSYPIPLSSSAAHIRCAAAAAAATR--- 182

Query: 150 TAPAPAPAAHTRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPP 209
                  A     VG      D     A +S   FVDEEELLNMP LL DMA+GM+V+PP
Sbjct: 183 -----GAAGAAVKVGQK--KEDKVYDTAESSTMGFVDEEELLNMPGLLADMAKGMMVAPP 242

Query: 210 RIKSLSSDDSPTNSPGDGLWSY 232
            + S  SDDSP NS G+ LWSY
Sbjct: 243 WMGSPPSDDSPENSDGESLWSY 248

[Close]
BLAST of CmaCh18G012180 vs. Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-40
Identity = 99/182 (54.40%), Postives = 121/182 (66.48%), Query Frame = 1 

Query: 52  SSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGP 111
           +++  S +H  FRG+R R+GKWVSEIR+PR+TTRIWLGTYP P+MAAAAYDVAALALKGP
Sbjct: 54  TATGLSGKHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGP 113

Query: 112 DASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFSSD 171
           DA LNFP   L+Y  P S S +DIRAAA+ AA  + P            +P    G   +
Sbjct: 114 DAVLNFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQP----GKEEE 173

Query: 172 ATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPR--IKSLSSDDSPTNSPGDGLW 231
               +  + + EF+DEE +LNMP LL +MAEGML+SPPR  I     DDSP N  GD LW
Sbjct: 174 LEEVSCNSCSLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGDNLW 231

[Close]
BLAST of CmaCh18G012180 vs. Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.9e-38
Identity = 99/189 (52.38%), Postives = 125/189 (66.14%), Query Frame = 1 

Query: 48  SSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALA 107
           S +S+   S  + P +RG+R RSGKWVSEIR+PR+TTRIWLGTYP  +MAAAAYDVAA+A
Sbjct: 4   SMASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMA 63

Query: 108 LKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAG 167
           LKG +A LNFP S+ SY +P STS +DIRAAAA AAA +          A   +      
Sbjct: 64  LKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKS 123

Query: 168 FSS----DATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPR-IKSLSSDDSPTN 227
            +     D    +++    EF+DEEE+LNMPNLL +MAEGM+V+PP  + S  SDDSP N
Sbjct: 124 RARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPEN 183

Query: 228 SPGDGLWSY 232
           S  + LW Y
Sbjct: 184 SNDEDLWGY 192

[Close]
BLAST of CmaCh18G012180 vs. Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-29
Identity = 87/184 (47.28%), Postives = 116/184 (63.04%), Query Frame = 1 

Query: 52  SSSSSSNRHPKFRGVRSR--SGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALK 111
           +S  +  RHP +RGVR R  S KWVSEIR+PR+  RIWLGT+ TP+MAA AYDVAALALK
Sbjct: 4   TSKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALK 63

Query: 112 GPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFS 171
           G  A LNFP+S+ S   P+S SP+DI+AAAA AAAA             +++  G A  +
Sbjct: 64  GSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMN 123

Query: 172 SDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPG--DG 231
           S    +    +   F+DE+ + +MPN+L++MAEGML+SPPR     +       PG  D 
Sbjct: 124 S----SYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDY 183

[Close]
BLAST of CmaCh18G012180 vs. Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-25
Identity = 83/180 (46.11%), Postives = 100/180 (55.56%), Query Frame = 1 

Query: 59  RHPKFRGVRSR-SGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNF 118
           RHP +RGVR R SGKWVSE+R+P + TRIWLGT+ T +MAA A+DVAALAL+G  A LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 119 PDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFSSDATAAAA 178
            DS     IP ST   DI+ AAA AA A    T         T    G         A  
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDT------TTTNHGLDMEETMVEAIY 163

Query: 179 AASAGE---FVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDG---LWSY 232
                E   ++DEE +  MP LL +MAEGML+ PP ++   + D      GDG   LWSY
Sbjct: 164 TPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYD----GEGDGDVSLWSY 213

[Close]
BLAST of CmaCh18G012180 vs. TrEMBL
Match: A0A0A0L6E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180265 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.2e-53
Identity = 131/192 (68.23%), Postives = 149/192 (77.60%), Query Frame = 1 

Query: 49  SSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALAL 108
           ++++S     RH  FRG+RSRSGKWVSEIR+PR+ TRIWLGTYPTP+MAAAAYDVAAL L
Sbjct: 4   NNNNSPLPPGRHRIFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALTL 63

Query: 109 KGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAA------HTRP 168
           KGP+ASLNFP SLLSY IP STSPSDIRAAAA+AAAAR+P  +PA    A       T  
Sbjct: 64  KGPNASLNFPHSLLSYPIPPSTSPSDIRAAAAIAAAARNPQASPATTSTATTTDSSGTEA 123

Query: 169 VGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDD-SPT 228
           + G G SS AT       +G+FVDEEELLNMPNLLVDMA+GMLVSPPR+KS SSDD SP 
Sbjct: 124 IDGGGPSSHATGDC----SGKFVDEEELLNMPNLLVDMAKGMLVSPPRMKSPSSDDNSPN 183

Query: 229 NSPG-DGLWSYS 233
           +S G DGLWSYS
Sbjct: 184 HSQGDDGLWSYS 191

[Close]
BLAST of CmaCh18G012180 vs. TrEMBL
Match: V4S428_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005869mg PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.2e-50
Identity = 119/187 (63.64%), Postives = 137/187 (73.26%), Query Frame = 1 

Query: 46  TQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAA 105
           + SS S SS S  RHP +RG+RSRSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAA
Sbjct: 38  SSSSPSLSSPSKGRHPSYRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAA 97

Query: 106 LALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGG 165
           LALKGP+  LNFP+ ++SY IP+STS SDIRAAAA AAAAR   + P P         G 
Sbjct: 98  LALKGPETPLNFPNMIISYPIPASTSASDIRAAAAQAAAARGSGSEPGPVQKESKESEG- 157

Query: 166 AGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPG 225
                    +++     EFVDE ELLNMPNLLVDMAEGMLVSPPRI + SSDDS  NS  
Sbjct: 158 --------TSSSTCMGQEFVDEYELLNMPNLLVDMAEGMLVSPPRIDTPSSDDSAGNSAE 215

Query: 226 DGLWSYS 233
           + LWSY+
Sbjct: 218 ESLWSYT 215

[Close]
BLAST of CmaCh18G012180 vs. TrEMBL
Match: A0A067EY85_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028004mg PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 6.2e-50
Identity = 119/187 (63.64%), Postives = 137/187 (73.26%), Query Frame = 1 

Query: 46  TQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAA 105
           + SS S SS S  RHP +RG+RSRSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAA
Sbjct: 38  SSSSPSLSSPSKGRHPSYRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAA 97

Query: 106 LALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGG 165
           LALKGP+  LNFP+ ++SY IP+STS SDIRAAAA AAAAR   + P P         G 
Sbjct: 98  LALKGPETPLNFPNMIISYPIPASTSASDIRAAAAQAAAARGSGSEPGPVQKESKESEG- 157

Query: 166 AGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPG 225
                    +++     EFVDE ELLNMPNLLVDMAEGMLVSPPRI + SSDDS  NS  
Sbjct: 158 --------TSSSTCMGQEFVDEYELLNMPNLLVDMAEGMLVSPPRIDTPSSDDSAGNSAE 215

Query: 226 DGLWSYS 233
           + LWSY+
Sbjct: 218 ESLWSYT 215

[Close]
BLAST of CmaCh18G012180 vs. TrEMBL
Match: F1SZW2_POPNI (AP2/ERF domain-containing protein OS=Populus nigra GN=PncERF1 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.0e-49
Identity = 122/210 (58.10%), Postives = 144/210 (68.57%), Query Frame = 1 

Query: 23  FFPHFIASASEFDSDSDSFMSDDTQSSSSSSS-SSSNRHPKFRGVRSRSGKWVSEIRQPR 82
           + P F           D      T+SS  SS+  +S RHP ++G+R RSGKWVSEIR+PR
Sbjct: 75  YSPRFGFPGQPVSGRQDDQSPRSTRSSGGSSTLPTSGRHPSYKGIRLRSGKWVSEIREPR 134

Query: 83  QTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAAL 142
           +TTR+WLGTYPTP+MAAAAYD AALALKGPD  LNFP+S+LSY IP+S S SDIRAAAA 
Sbjct: 135 KTTRVWLGTYPTPEMAAAAYDAAALALKGPDTPLNFPESILSYPIPASASSSDIRAAAAS 194

Query: 143 AAAARHPYTAPAPAPAAHTRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMA 202
           AA++R P     P P        G   +S +T  A   S  EF+DEEELLN+PNLLVDMA
Sbjct: 195 AASSRSPRPEAGPNPEWDRLETKG---TSSSTTTADIQSGQEFIDEEELLNLPNLLVDMA 254

Query: 203 EGMLVSPPRIKSLSSDDSPTNSPGDGLWSY 232
            GMLVSPPRI + SSDDSP NS  + LWSY
Sbjct: 255 GGMLVSPPRINTPSSDDSPGNSDAENLWSY 281

[Close]
BLAST of CmaCh18G012180 vs. TrEMBL
Match: A0A067JS16_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26160 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.2e-49
Identity = 119/182 (65.38%), Postives = 140/182 (76.92%), Query Frame = 1 

Query: 50  SSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALK 109
           S S   S+ RHP +RG+RSRSGKWVSEIR+PR+TTRIWLGTY TP+MAAAAYDVAAL+LK
Sbjct: 44  SPSGFPSTGRHPTYRGIRSRSGKWVSEIREPRKTTRIWLGTYSTPEMAAAAYDVAALSLK 103

Query: 110 GPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFS 169
           GPDA+LNFP+S+LSY IP+S S SDIRAAAA AA AR P       P+  T P+   G S
Sbjct: 104 GPDAALNFPESILSYPIPASMSASDIRAAAATAAMARQPKPESGSNPS--TGPLEIEGTS 163

Query: 170 SDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLW 229
           S  +  +   S  +F+DEEE+LNMPNLLVDMAEGML+SPPRI + SSDDS  NS  +GLW
Sbjct: 164 S--SGISYVESGQKFIDEEEILNMPNLLVDMAEGMLLSPPRINTPSSDDSAGNS-DEGLW 220

Query: 230 SY 232
           SY
Sbjct: 224 SY 220

[Close]
BLAST of CmaCh18G012180 vs. TAIR10
Match: AT5G52020.1 (AT5G52020.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-42
Identity = 99/182 (54.40%), Postives = 121/182 (66.48%), Query Frame = 1 

Query: 52  SSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGP 111
           +++  S +H  FRG+R R+GKWVSEIR+PR+TTRIWLGTYP P+MAAAAYDVAALALKGP
Sbjct: 54  TATGLSGKHSIFRGIRLRNGKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGP 113

Query: 112 DASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFSSD 171
           DA LNFP   L+Y  P S S +DIRAAA+ AA  + P            +P    G   +
Sbjct: 114 DAVLNFPGLALTYVAPVSNSAADIRAAASRAAEMKQPDQGGDEKVLEPVQP----GKEEE 173

Query: 172 ATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPR--IKSLSSDDSPTNSPGDGLW 231
               +  + + EF+DEE +LNMP LL +MAEGML+SPPR  I     DDSP N  GD LW
Sbjct: 174 LEEVSCNSCSLEFMDEEAMLNMPTLLTEMAEGMLMSPPRMMIHPTMEDDSPENHEGDNLW 231

[Close]
BLAST of CmaCh18G012180 vs. TAIR10
Match: AT1G12630.1 (AT1G12630.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-39
Identity = 99/189 (52.38%), Postives = 125/189 (66.14%), Query Frame = 1 

Query: 48  SSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALA 107
           S +S+   S  + P +RG+R RSGKWVSEIR+PR+TTRIWLGTYP  +MAAAAYDVAA+A
Sbjct: 4   SMASAGLGSRRKDPVYRGIRCRSGKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMA 63

Query: 108 LKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAG 167
           LKG +A LNFP S+ SY +P STS +DIRAAAA AAA +          A   +      
Sbjct: 64  LKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKS 123

Query: 168 FSS----DATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPR-IKSLSSDDSPTN 227
            +     D    +++    EF+DEEE+LNMPNLL +MAEGM+V+PP  + S  SDDSP N
Sbjct: 124 RARECHVDNDVGSSSWCGTEFMDEEEVLNMPNLLANMAEGMMVAPPSWMGSRPSDDSPEN 183

Query: 228 SPGDGLWSY 232
           S  + LW Y
Sbjct: 184 SNDEDLWGY 192

[Close]
BLAST of CmaCh18G012180 vs. TAIR10
Match: AT2G36450.1 (AT2G36450.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-30
Identity = 87/184 (47.28%), Postives = 116/184 (63.04%), Query Frame = 1 

Query: 52  SSSSSSNRHPKFRGVRSR--SGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALK 111
           +S  +  RHP +RGVR R  S KWVSEIR+PR+  RIWLGT+ TP+MAA AYDVAALALK
Sbjct: 4   TSKDNGGRHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALK 63

Query: 112 GPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFS 171
           G  A LNFP+S+ S   P+S SP+DI+AAAA AAAA             +++  G A  +
Sbjct: 64  GSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMANNNSQTSGVACMN 123

Query: 172 SDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPG--DG 231
           S    +    +   F+DE+ + +MPN+L++MAEGML+SPPR     +       PG  D 
Sbjct: 124 S----SYDNTNMNGFMDEDLVFDMPNVLMNMAEGMLLSPPRPTVFDAAYDADGFPGGDDY 183

[Close]
BLAST of CmaCh18G012180 vs. TAIR10
Match: AT4G25490.1 (AT4G25490.1 C-repeat/DRE binding factor 1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 83/180 (46.11%), Postives = 100/180 (55.56%), Query Frame = 1 

Query: 59  RHPKFRGVRSR-SGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNF 118
           RHP +RGVR R SGKWVSE+R+P + TRIWLGT+ T +MAA A+DVAALAL+G  A LNF
Sbjct: 44  RHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNF 103

Query: 119 PDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFSSDATAAAA 178
            DS     IP ST   DI+ AAA AA A    T         T    G         A  
Sbjct: 104 ADSAWRLRIPESTCAKDIQKAAAEAALAFQDETCDT------TTTNHGLDMEETMVEAIY 163

Query: 179 AASAGE---FVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDG---LWSY 232
                E   ++DEE +  MP LL +MAEGML+ PP ++   + D      GDG   LWSY
Sbjct: 164 TPEQSEGAFYMDEETMFGMPTLLDNMAEGMLLPPPSVQWNHNYD----GEGDGDVSLWSY 213

[Close]
BLAST of CmaCh18G012180 vs. TAIR10
Match: AT5G51990.1 (AT5G51990.1 C-repeat-binding factor 4)

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-25
Identity = 87/210 (41.43%), Postives = 115/210 (54.76%), Query Frame = 1 

Query: 36  SDSDSFMSDDTQSSSSSSSSS-----------SNRHPKFRGVRSR-SGKWVSEIRQPRQT 95
           SD  S +SD ++ S   +SS              RHP +RGVR R SGKWV E+R+P + 
Sbjct: 16  SDHRSPVSDSSECSPKLASSCPKKRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKK 75

Query: 96  TRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAA 155
           +RIWLGT+PT +MAA A+DVAALAL+G  A LNF DS     IP +T P +I+ AA+ AA
Sbjct: 76  SRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAA 135

Query: 156 AA-RHPYTAPAPAPAAHTRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAE 215
            A ++  T      AA      G G       A        ++D+E LL MPN   +MAE
Sbjct: 136 MAFQNETTTEGSKTAAEAEEAAGEGVREGERRAEEQNGGVFYMDDEALLGMPNFFENMAE 195

Query: 216 GMLVSPPRIKSLSSDDSPTNSPGD-GLWSY 232
           GML+ PP +    +D    +  GD  LWS+
Sbjct: 196 GMLLPPPEVGWNHND---FDGVGDVSLWSF 222

[Close]
BLAST of CmaCh18G012180 vs. NCBI nr
Match: gi|449446193|ref|XP_004140856.1| (PREDICTED: ethylene-responsive transcription factor ERF025 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.7e-53
Identity = 131/192 (68.23%), Postives = 149/192 (77.60%), Query Frame = 1 

Query: 49  SSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALAL 108
           ++++S     RH  FRG+RSRSGKWVSEIR+PR+ TRIWLGTYPTP+MAAAAYDVAAL L
Sbjct: 4   NNNNSPLPPGRHRIFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAYDVAALTL 63

Query: 109 KGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAA------HTRP 168
           KGP+ASLNFP SLLSY IP STSPSDIRAAAA+AAAAR+P  +PA    A       T  
Sbjct: 64  KGPNASLNFPHSLLSYPIPPSTSPSDIRAAAAIAAAARNPQASPATTSTATTTDSSGTEA 123

Query: 169 VGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDD-SPT 228
           + G G SS AT       +G+FVDEEELLNMPNLLVDMA+GMLVSPPR+KS SSDD SP 
Sbjct: 124 IDGGGPSSHATGDC----SGKFVDEEELLNMPNLLVDMAKGMLVSPPRMKSPSSDDNSPN 183

Query: 229 NSPG-DGLWSYS 233
           +S G DGLWSYS
Sbjct: 184 HSQGDDGLWSYS 191

[Close]
BLAST of CmaCh18G012180 vs. NCBI nr
Match: gi|659077356|ref|XP_008439163.1| (PREDICTED: ethylene-responsive transcription factor ERF027 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 3.8e-53
Identity = 137/207 (66.18%), Postives = 157/207 (75.85%), Query Frame = 1 

Query: 42  MSDDTQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAY 101
           MSD+  +++++S     RH  FRG+RSRSGKWVSEIR+PR+ TRIWLGTYPTP+MAAAAY
Sbjct: 1   MSDN--NNNNNSPLPPGRHRIFRGIRSRSGKWVSEIREPRKATRIWLGTYPTPEMAAAAY 60

Query: 102 DVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHP-YTAPAPAPAAH- 161
           DVAAL LKGP+ASLNFP SLLSY IP STSPSDIRAAAA+AAAAR+P  T+P  +PAA  
Sbjct: 61  DVAALTLKGPNASLNFPHSLLSYPIPPSTSPSDIRAAAAIAAAARNPNNTSPQASPAAAT 120

Query: 162 ------------TRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVS 221
                       T  + G G SS AT       +G+FVDEEELLNMPNLLVDMAEGMLVS
Sbjct: 121 TITATTTEYSSVTEAIDGGGPSSHATGDC----SGKFVDEEELLNMPNLLVDMAEGMLVS 180

Query: 222 PPRIKSLSSDD-SPTNSPG-DGLWSYS 233
           PPR+KS SSDD SP +S G DGLWSYS
Sbjct: 181 PPRMKSPSSDDNSPNHSQGDDGLWSYS 201

[Close]
BLAST of CmaCh18G012180 vs. NCBI nr
Match: gi|1009122590|ref|XP_015878083.1| (PREDICTED: ethylene-responsive transcription factor ERF027 [Ziziphus jujuba])

HSP 1 Score: 213.0 bits (541), Expect = 5.5e-52
Identity = 122/183 (66.67%), Postives = 142/183 (77.60%), Query Frame = 1 

Query: 50  SSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAALALK 109
           + SSS S  RHP +RG+R RSGKWVSEIR+PR++TRIWLGTYP PDMAAAAYDVAALALK
Sbjct: 46  AGSSSGSVRRHPVYRGIRFRSGKWVSEIREPRKSTRIWLGTYPIPDMAAAAYDVAALALK 105

Query: 110 GPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGGAGFS 169
           GPD +LNFP+ +LSY IP+STS  DIRAAAA AA ++ P T P  A    ++P      S
Sbjct: 106 GPDTALNFPNCILSYPIPASTSAGDIRAAAARAAESKLP-TKPQEAGGESSKPPSEKEES 165

Query: 170 SDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPGDGLW 229
           S    ++   S  EF+DEEELLNMPNLLVDMAEGMLVSPPRIKS SSD+SPTNS G+ LW
Sbjct: 166 SG--GSSMVKSGEEFIDEEELLNMPNLLVDMAEGMLVSPPRIKSQSSDESPTNSDGESLW 225

Query: 230 SYS 233
           SY+
Sbjct: 226 SYT 225

[Close]
BLAST of CmaCh18G012180 vs. NCBI nr
Match: gi|567858328|ref|XP_006421847.1| (hypothetical protein CICLE_v10005869mg [Citrus clementina])

HSP 1 Score: 205.7 bits (522), Expect = 8.9e-50
Identity = 119/187 (63.64%), Postives = 137/187 (73.26%), Query Frame = 1 

Query: 46  TQSSSSSSSSSSNRHPKFRGVRSRSGKWVSEIRQPRQTTRIWLGTYPTPDMAAAAYDVAA 105
           + SS S SS S  RHP +RG+RSRSGKWVSEIR+PR+TTRIWLGTYPTP+MAAAAYDVAA
Sbjct: 38  SSSSPSLSSPSKGRHPSYRGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAA 97

Query: 106 LALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAALAAAARHPYTAPAPAPAAHTRPVGG 165
           LALKGP+  LNFP+ ++SY IP+STS SDIRAAAA AAAAR   + P P         G 
Sbjct: 98  LALKGPETPLNFPNMIISYPIPASTSASDIRAAAAQAAAARGSGSEPGPVQKESKESEG- 157

Query: 166 AGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMAEGMLVSPPRIKSLSSDDSPTNSPG 225
                    +++     EFVDE ELLNMPNLLVDMAEGMLVSPPRI + SSDDS  NS  
Sbjct: 158 --------TSSSTCMGQEFVDEYELLNMPNLLVDMAEGMLVSPPRIDTPSSDDSAGNSAE 215

Query: 226 DGLWSYS 233
           + LWSY+
Sbjct: 218 ESLWSYT 215

[Close]
BLAST of CmaCh18G012180 vs. NCBI nr
Match: gi|327343670|dbj|BAK09567.1| (AP2/ERF domain-containing protein [Populus nigra])

HSP 1 Score: 203.0 bits (515), Expect = 5.7e-49
Identity = 122/210 (58.10%), Postives = 144/210 (68.57%), Query Frame = 1 

Query: 23  FFPHFIASASEFDSDSDSFMSDDTQSSSSSSS-SSSNRHPKFRGVRSRSGKWVSEIRQPR 82
           + P F           D      T+SS  SS+  +S RHP ++G+R RSGKWVSEIR+PR
Sbjct: 75  YSPRFGFPGQPVSGRQDDQSPRSTRSSGGSSTLPTSGRHPSYKGIRLRSGKWVSEIREPR 134

Query: 83  QTTRIWLGTYPTPDMAAAAYDVAALALKGPDASLNFPDSLLSYHIPSSTSPSDIRAAAAL 142
           +TTR+WLGTYPTP+MAAAAYD AALALKGPD  LNFP+S+LSY IP+S S SDIRAAAA 
Sbjct: 135 KTTRVWLGTYPTPEMAAAAYDAAALALKGPDTPLNFPESILSYPIPASASSSDIRAAAAS 194

Query: 143 AAAARHPYTAPAPAPAAHTRPVGGAGFSSDATAAAAAASAGEFVDEEELLNMPNLLVDMA 202
           AA++R P     P P        G   +S +T  A   S  EF+DEEELLN+PNLLVDMA
Sbjct: 195 AASSRSPRPEAGPNPEWDRLETKG---TSSSTTTADIQSGQEFIDEEELLNLPNLLVDMA 254

Query: 203 EGMLVSPPRIKSLSSDDSPTNSPGDGLWSY 232
            GMLVSPPRI + SSDDSP NS  + LWSY
Sbjct: 255 GGMLVSPPRINTPSSDDSPGNSDAENLWSY 281

The following BLAST results are available for this feature:
BLAST of CmaCh18G012180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERF26_ARATH5.2e-4254.46Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF02... [more]
ERF25_ARATH1.7e-4054.40Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF02... [more]
ERF27_ARATH5.9e-3852.38Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF02... [more]
ERF24_ARATH3.9e-2947.28Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF02... [more]
DRE1B_ARATH2.0e-2546.11Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DRE... [more]
BLAST of CmaCh18G012180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6E0_CUCSA1.2e-5368.23Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180265 PE=4 SV=1[more]
V4S428_9ROSI6.2e-5063.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005869mg PE=4 SV=1[more]
A0A067EY85_CITSI6.2e-5063.64Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028004mg PE=4 SV=1[more]
F1SZW2_POPNI4.0e-4958.10AP2/ERF domain-containing protein OS=Populus nigra GN=PncERF1 PE=2 SV=1[more]
A0A067JS16_JATCU5.2e-4965.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26160 PE=4 SV=1[more]
BLAST of CmaCh18G012180 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52020.19.4e-4254.40 Integrase-type DNA-binding superfamily protein[more]
AT1G12630.13.4e-3952.38 Integrase-type DNA-binding superfamily protein[more]
AT2G36450.12.2e-3047.28 Integrase-type DNA-binding superfamily protein[more]
AT4G25490.11.1e-2646.11 C-repeat/DRE binding factor 1[more]
AT5G51990.12.8e-2541.43 C-repeat-binding factor 4[more]
BLAST of CmaCh18G012180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446193|ref|XP_004140856.1|1.7e-5368.23PREDICTED: ethylene-responsive transcription factor ERF025 [Cucumis sativus][more]
gi|659077356|ref|XP_008439163.1|3.8e-5366.18PREDICTED: ethylene-responsive transcription factor ERF027 [Cucumis melo][more]
gi|1009122590|ref|XP_015878083.1|5.5e-5266.67PREDICTED: ethylene-responsive transcription factor ERF027 [Ziziphus jujuba][more]
gi|567858328|ref|XP_006421847.1|8.9e-5063.64hypothetical protein CICLE_v10005869mg [Citrus clementina][more]
gi|327343670|dbj|BAK09567.1|5.7e-4958.10AP2/ERF domain-containing protein [Populus nigra][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001471AP2/ERF_dom
IPR016177DNA-bd_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G012180.1CmaCh18G012180.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 100..120
score: 1.6E-6coord: 63..74
score: 1.
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 62..120
score: 1.8
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 61..110
score: 8.2
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 62..124
score: 2.0
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 62..118
score: 19
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 62..120
score: 9.15
NoneNo IPR availablePANTHERPTHR31985FAMILY NOT NAMEDcoord: 43..232
score: 3.1
NoneNo IPR availablePANTHERPTHR31985:SF30SUBFAMILY NOT NAMEDcoord: 43..232
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G012180Cucsa.251020Cucumber (Gy14) v1cgycmaB0716
CmaCh18G012180Cla006211Watermelon (97103) v1cmawmB373
CmaCh18G012180Csa5G155560Cucumber (Chinese Long) v2cmacuB420
CmaCh18G012180MELO3C006870Melon (DHL92) v3.5.1cmameB375
CmaCh18G012180ClCG01G003110Watermelon (Charleston Gray)cmawcgB352
CmaCh18G012180CSPI03G16560Wild cucumber (PI 183967)cmacpiB413
CmaCh18G012180CmoCh18G012390Cucurbita moschata (Rifu)cmacmoB406
CmaCh18G012180Lsi09G003090Bottle gourd (USVL1VR-Ls)cmalsiB365
CmaCh18G012180Cp4.1LG09g01060Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G012180MELO3C005630.2Melon (DHL92) v3.6.1cmamedB407
CmaCh18G012180MELO3C006870.2Melon (DHL92) v3.6.1cmamedB432
CmaCh18G012180CsaV3_5G003240Cucumber (Chinese Long) v3cmacucB0502
CmaCh18G012180CsaV3_3G016770Cucumber (Chinese Long) v3cmacucB0487
CmaCh18G012180Cla97C01G003210Watermelon (97103) v2cmawmbB403
CmaCh18G012180Cla97C05G089740Watermelon (97103) v2cmawmbB424
CmaCh18G012180CsGy5G003130Cucumber (Gy14) v2cgybcmaB630
CmaCh18G012180CsGy3G016680Cucumber (Gy14) v2cgybcmaB352
CmaCh18G012180Carg26814Silver-seed gourdcarcmaB0011
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G012180Silver-seed gourdcarcmaB0996
CmaCh18G012180Silver-seed gourdcarcmaB1208
CmaCh18G012180Wax gourdcmawgoB0507
CmaCh18G012180Cucurbita maxima (Rimu)cmacmaB338
CmaCh18G012180Cucurbita maxima (Rimu)cmacmaB396
CmaCh18G012180Cucurbita moschata (Rifu)cmacmoB405
CmaCh18G012180Cucurbita moschata (Rifu)cmacmoB416
CmaCh18G012180Cucumber (Chinese Long) v2cmacuB408
CmaCh18G012180Watermelon (Charleston Gray)cmawcgB365
CmaCh18G012180Cucurbita pepo (Zucchini)cmacpeB425
CmaCh18G012180Cucurbita pepo (Zucchini)cmacpeB453
CmaCh18G012180Bottle gourd (USVL1VR-Ls)cmalsiB387