CmaCh18G006290 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G006290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribonuclease T2 family protein
Location	Cma_Chr18 : 5605033 .. 5605424 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATATGTTCGGAGTCCGTTTTTAATCAAGTTCAATACTTTCAAACAACTTTGAACATTCGTACCAATTCCAACTACGACCTACTGGCCATTCTGAAAACTGCCAGGCTCAGCCCAACCGGCAGCATATCCCACCGCTATCATGTCATCGAAGGTGCCATTCAGGCTGCAATAGGAAAGAAGTCAGGCCTCCACTGCAACATCAATAAGAAAACTAGAAATAATCAATTGCACGAAATTGTATTATGCTTTGATAAAAATGGAGTGACTCTCATAGATTGTCCGTTTCCCCGCAAGTGCCCAACGCAGTTTAAGGCTCTGGTTTTAATACTTGTTTTTTTTTTTTTCTTCTTGCACTCTAAGATGTCCATTTATGCTATGGAAAAATAA

mRNA sequence

ATGGAATATGTTCGGATTCAATACTTTCAAACAACTTTGAACATTCGTACCAATTCCAACTACGACCTACTGGCCATTCTGAAAACTGCCAGGCTCAGCCCAACCGGCAGCATATCCCACCGCTATCATGTCATCGAAGGTGCCATTCAGGCTGCAATAGGAAAGAAGTCAGGCCTCCACTGCAACATCAATAAGAAAACTAGAAATAATCAATTGCACGAAATTGTATTATGCTTTGATAAAAATGGAGTGACTCTCATAGATTGTCCGTTTCCCCGCAAGTGCCCAACGCAGTTTAAGGCTCTGATGTCCATTTATGCTATGGAAAAATAA

Coding sequence (CDS)

ATGGAATATGTTCGGATTCAATACTTTCAAACAACTTTGAACATTCGTACCAATTCCAACTACGACCTACTGGCCATTCTGAAAACTGCCAGGCTCAGCCCAACCGGCAGCATATCCCACCGCTATCATGTCATCGAAGGTGCCATTCAGGCTGCAATAGGAAAGAAGTCAGGCCTCCACTGCAACATCAATAAGAAAACTAGAAATAATCAATTGCACGAAATTGTATTATGCTTTGATAAAAATGGAGTGACTCTCATAGATTGTCCGTTTCCCCGCAAGTGCCCAACGCAGTTTAAGGCTCTGATGTCCATTTATGCTATGGAAAAATAA

Protein sequence

MEYVRIQYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKTRNNQLHEIVLCFDKNGVTLIDCPFPRKCPTQFKALMSIYAMEK

Homology

[Close]

BLAST of CmaCh18G006290 vs. Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF+  L+++  +  DLL+IL+ A + P G  S+    I  AI++AIG    + CN+++ +
Sbjct: 136 YFKKALDLK--NQIDLLSILQGADIHPDGE-SYDLVNIRNAIKSAIGYTPWIQCNVDQ-S 195

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP-FP-RKCPTQFK 101
            N+QL+++ +C D +G +LI+CP FP  KC T  +
Sbjct: 196 GNSQLYQVYICVDGSGSSLIECPIFPGGKCGTSIE 226

[Close]

BLAST of CmaCh18G006290 vs. Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF+  +++R  +NYD++  L+     P G    R   I+G ++A  GK  GL C  + +T
Sbjct: 102 YFKLAVDMR--NNYDIIGALRPHAAGPNGRTKSR-QAIKGFLKAKFGKFPGLRCRTDPQT 161

Query: 68  RNNQLHEIVLCFDKNGVTLIDC 90
           + + L ++V CF ++G TLIDC
Sbjct: 162 KVSYLVQVVACFAQDGSTLIDC 180

[Close]

BLAST of CmaCh18G006290 vs. Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 7   QYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKK 66
           +YFQT LN++  +N  LL  L  A ++P G  S+    I  +I+ +IG    + CN    
Sbjct: 135 EYFQTALNLKQKTN--LLGALTKAGINPDGK-SYSLESIRDSIKESIGFTPWVECN-RDG 194

Query: 67  TRNNQLHEIVLCFDKNGVTLIDCP-FPR-KCPTQFK 101
           + N+QL+++ LC D++G  LI+CP FP  KC  + +
Sbjct: 195 SGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEIE 226

[Close]

BLAST of CmaCh18G006290 vs. TrEMBL
Match: A0A0A0LDS5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-13
Identity = 49/99 (49.49%), Postives = 58/99 (58.59%), Query Frame = 1


Query: 7   QYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCN-INK 66
           QYF+  LNIR    YDL+AIL  A L P+ S  H+Y  I   IQAA+  K  L CN  N 
Sbjct: 120 QYFELALNIRKYKKYDLMAILNNAGLHPSTSKLHQYDDIADLIQAAVEAKPLLKCNDKNG 179

Query: 67  KTRNNQLHEIVLCFDKNGVTLIDC---PFPRK-CPTQFK 101
           + +NNQL E++LCFD  GV  IDC   P P K C   FK
Sbjct: 180 QGQNNQLWEVILCFDHGGVNPIDCPAQPVPHKMCVGDFK 218

[Close]

BLAST of CmaCh18G006290 vs. TrEMBL
Match: A0A0A0LAN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-10
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 7   QYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKK 66
           QYFQ +LN+     +DLL ILK A L+P  S +     I   IQ    K  G+ CN N K
Sbjct: 122 QYFQISLNLLRK--FDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVK 181

Query: 67  TRNNQLHEIVLCFDKNGVTLIDCP 91
           T  +QL+EIVLC +K+G TLIDCP
Sbjct: 182 TGKSQLNEIVLCLEKDGATLIDCP 203

[Close]

BLAST of CmaCh18G006290 vs. TrEMBL
Match: A0A0A0LAB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.5e-09
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF  +L  R N  YDLL IL  A LS           +   I+ A G + G+ CNIN  T
Sbjct: 123 YFDISLRHRMNKTYDLLTILNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGIT 182

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP 91
           +  QL EIVLCF  +G TLIDCP
Sbjct: 183 KKLQLKEIVLCFGNDGTTLIDCP 205

[Close]

BLAST of CmaCh18G006290 vs. TrEMBL
Match: G7KFA3_MEDTR (Ribonuclease T2 family protein OS=Medicago truncatula GN=MTR_5g040960 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-08
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF+TTLN+R  +N  LL  L +A + P G  S+    I+GAIQ AIG    + CN++  +
Sbjct: 135 YFETTLNLRQKAN--LLQALTSAGIQPDGG-SYTLSSIKGAIQNAIGYTPYIECNVD-SS 194

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP-FPR 94
           +N+QL+++ LC D +G   IDCP FP+
Sbjct: 195 KNSQLYQVYLCVDTSGSDFIDCPVFPK 217

[Close]

BLAST of CmaCh18G006290 vs. TrEMBL
Match: G7KFA1_MEDTR (Ribonuclease T2 family protein OS=Medicago truncatula GN=MTR_5g040940 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-08
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF+TTLN+R  +N  LL  L +A + P G+ S+    I+GAIQ A+G    + CN++  +
Sbjct: 134 YFETTLNLRQKAN--LLQALTSAGVQPDGN-SYSLSSIKGAIQNAVGFAPFIECNVD-SS 193

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP-FPR-KCPTQFK 101
            N+QL+++ LC D +G   IDCP FP  KC ++ +
Sbjct: 194 GNSQLYQVYLCVDTSGSNFIDCPVFPHGKCGSEIE 224

[Close]

BLAST of CmaCh18G006290 vs. TAIR10
Match: AT2G02990.1 (AT2G02990.1 ribonuclease 1)

HSP 1 Score: 57.0 bits (136), Expect = 8.5e-09
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 7   QYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKK 66
           +YFQT LN++  +N  LL  L  A ++P G  S+    I  +I+ +IG    + CN    
Sbjct: 135 EYFQTALNLKQKTN--LLGALTKAGINPDGK-SYSLESIRDSIKESIGFTPWVECN-RDG 194

Query: 67  TRNNQLHEIVLCFDKNGVTLIDCP-FPR-KCPTQFK 101
           + N+QL+++ LC D++G  LI+CP FP  KC  + +
Sbjct: 195 SGNSQLYQVYLCVDRSGSGLIECPVFPHGKCGAEIE 226

[Close]

BLAST of CmaCh18G006290 vs. NCBI nr
Match: gi|700203881|gb|KGN59014.1| (hypothetical protein Csa_3G743990 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-13
Identity = 49/99 (49.49%), Postives = 58/99 (58.59%), Query Frame = 1


Query: 7   QYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCN-INK 66
           QYF+  LNIR    YDL+AIL  A L P+ S  H+Y  I   IQAA+  K  L CN  N 
Sbjct: 120 QYFELALNIRKYKKYDLMAILNNAGLHPSTSKLHQYDDIADLIQAAVEAKPLLKCNDKNG 179

Query: 67  KTRNNQLHEIVLCFDKNGVTLIDC---PFPRK-CPTQFK 101
           + +NNQL E++LCFD  GV  IDC   P P K C   FK
Sbjct: 180 QGQNNQLWEVILCFDHGGVNPIDCPAQPVPHKMCVGDFK 218

[Close]

BLAST of CmaCh18G006290 vs. NCBI nr
Match: gi|700203887|gb|KGN59020.1| (hypothetical protein Csa_3G745530 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 1


Query: 7   QYFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKK 66
           QYFQ +LN+     +DLL ILK A L+P  S +     I   IQ    K  G+ CN N K
Sbjct: 122 QYFQISLNLLRK--FDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVK 181

Query: 67  TRNNQLHEIVLCFDKNGVTLIDCP 91
           T  +QL+EIVLC +K+G TLIDCP
Sbjct: 182 TGKSQLNEIVLCLEKDGATLIDCP 203

[Close]

BLAST of CmaCh18G006290 vs. NCBI nr
Match: gi|778683692|ref|XP_011651927.1| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-08
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF  +L  R N  YDLL IL  A LS           +   I+ A G + G+ CNIN  T
Sbjct: 123 YFDISLRHRMNKTYDLLTILNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGIT 182

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP 91
           +  QL EIVLCF  +G TLIDCP
Sbjct: 183 KKLQLKEIVLCFGNDGTTLIDCP 205

[Close]

BLAST of CmaCh18G006290 vs. NCBI nr
Match: gi|357487007|ref|XP_003613791.1| (ribonuclease T2 family protein [Medicago truncatula])

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-08
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF+TTLN+R  +N  LL  L +A + P G  S+    I+GAIQ AIG    + CN++  +
Sbjct: 135 YFETTLNLRQKAN--LLQALTSAGIQPDGG-SYTLSSIKGAIQNAIGYTPYIECNVD-SS 194

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP-FPR 94
           +N+QL+++ LC D +G   IDCP FP+
Sbjct: 195 KNSQLYQVYLCVDTSGSDFIDCPVFPK 217

[Close]

BLAST of CmaCh18G006290 vs. NCBI nr
Match: gi|357487003|ref|XP_003613789.1| (ribonuclease T2 family protein [Medicago truncatula])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-08
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 8   YFQTTLNIRTNSNYDLLAILKTARLSPTGSISHRYHVIEGAIQAAIGKKSGLHCNINKKT 67
           YF+TTLN+R  +N  LL  L +A + P G+ S+    I+GAIQ A+G    + CN++  +
Sbjct: 134 YFETTLNLRQKAN--LLQALTSAGVQPDGN-SYSLSSIKGAIQNAVGFAPFIECNVD-SS 193

Query: 68  RNNQLHEIVLCFDKNGVTLIDCP-FPR-KCPTQFK 101
            N+QL+++ LC D +G   IDCP FP  KC ++ +
Sbjct: 194 GNSQLYQVYLCVDTSGSNFIDCPVFPHGKCGSEIE 224

The following BLAST results are available for this feature:

BLAST of CmaCh18G006290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNLE_SOLLC	1.2e-07	36.84	Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2	[more]
RNMC_MOMCH	1.5e-07	35.37	Ribonuclease MC OS=Momordica charantia PE=1 SV=1	[more]
RNS1_ARATH	1.5e-07	36.46	Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1	[more]

BLAST of CmaCh18G006290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDS5_CUCSA	3.7e-13	49.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G743990 PE=3 SV=1	[more]
A0A0A0LAN6_CUCSA	1.3e-10	48.81	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G745530 PE=3 SV=1	[more]
A0A0A0LAB0_CUCSA	9.5e-09	45.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G736680 PE=3 SV=1	[more]
G7KFA3_MEDTR	1.2e-08	43.68	Ribonuclease T2 family protein OS=Medicago truncatula GN=MTR_5g040960 PE=2 SV=1	[more]
G7KFA1_MEDTR	2.1e-08	41.05	Ribonuclease T2 family protein OS=Medicago truncatula GN=MTR_5g040940 PE=3 SV=1	[more]

BLAST of CmaCh18G006290 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02990.1	8.5e-09	36.46	ribonuclease 1	[more]

BLAST of CmaCh18G006290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700203881\|gb\|KGN59014.1\|	5.4e-13	49.49	hypothetical protein Csa_3G743990 [Cucumis sativus]	[more]
gi\|700203887\|gb\|KGN59020.1\|	1.9e-10	48.81	hypothetical protein Csa_3G745530 [Cucumis sativus]	[more]
gi\|778683692\|ref\|XP_011651927.1\|	1.4e-08	45.78	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|357487007\|ref\|XP_003613791.1\|	1.8e-08	43.68	ribonuclease T2 family protein [Medicago truncatula]	[more]
gi\|357487003\|ref\|XP_003613789.1\|	3.0e-08	41.05	ribonuclease T2 family protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071704	organic substance metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G006290.1	CmaCh18G006290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 7..101 score: 6.8
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 6..89 score: 2.2
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 6..98 score: 7.59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G006290	Cp4.1LG10g12570	Cucurbita pepo (Zucchini)	cmacpeB418

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G006290	Watermelon (97103) v2	cmawmbB394
CmaCh18G006290	Wax gourd	cmawgoB0515
CmaCh18G006290	Wax gourd	cmawgoB0535
CmaCh18G006290	Cucurbita maxima (Rimu)	cmacmaB211
CmaCh18G006290	Cucurbita maxima (Rimu)	cmacmaB214
CmaCh18G006290	Cucurbita maxima (Rimu)	cmacmaB216
CmaCh18G006290	Cucumber (Gy14) v1	cgycmaB0884
CmaCh18G006290	Cucurbita moschata (Rifu)	cmacmoB398
CmaCh18G006290	Cucurbita moschata (Rifu)	cmacmoB395
CmaCh18G006290	Cucurbita moschata (Rifu)	cmacmoB407
CmaCh18G006290	Cucurbita moschata (Rifu)	cmacmoB419
CmaCh18G006290	Wild cucumber (PI 183967)	cmacpiB403
CmaCh18G006290	Cucumber (Chinese Long) v2	cmacuB399
CmaCh18G006290	Cucumber (Chinese Long) v2	cmacuB425
CmaCh18G006290	Melon (DHL92) v3.5.1	cmameB361
CmaCh18G006290	Melon (DHL92) v3.5.1	cmameB367
CmaCh18G006290	Melon (DHL92) v3.5.1	cmameB369
CmaCh18G006290	Watermelon (Charleston Gray)	cmawcgB341
CmaCh18G006290	Watermelon (97103) v1	cmawmB386
CmaCh18G006290	Cucurbita pepo (Zucchini)	cmacpeB413
CmaCh18G006290	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G006290	Cucurbita pepo (Zucchini)	cmacpeB438
CmaCh18G006290	Cucurbita pepo (Zucchini)	cmacpeB445
CmaCh18G006290	Bottle gourd (USVL1VR-Ls)	cmalsiB369
CmaCh18G006290	Cucumber (Gy14) v2	cgybcmaB092
CmaCh18G006290	Cucumber (Gy14) v2	cgybcmaB095
CmaCh18G006290	Cucumber (Gy14) v2	cgybcmaB771
CmaCh18G006290	Melon (DHL92) v3.6.1	cmamedB414
CmaCh18G006290	Melon (DHL92) v3.6.1	cmamedB421
CmaCh18G006290	Cucumber (Chinese Long) v3	cmacucB0468
CmaCh18G006290	Cucumber (Chinese Long) v3	cmacucB0473
CmaCh18G006290	Cucumber (Chinese Long) v3	cmacucB0476
CmaCh18G006290	Cucumber (Chinese Long) v3	cmacucB0509