CmaCh18G005260 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G005260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionBasic helix-loop-helix DNA-binding superfamily protein, putative
LocationCma_Chr18 : 3275985 .. 3276827 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCTCTCACTTTTTTCTCCAATTTTTACTCTGACCCTTCTTCAATCAATCCCCAATTCCCCTATTTCTCCCCCGAAATGTCGCCGGACCTCTTCTTTCTCCCTCCGCCACACCTCGATTACGTCCCTGCGATGCCCGATGACTCTGTTCTTTTCCCGACTGTCGCTCCGTTCTTTGACGATGCTTCTCCGTTTCTTTTCTCCGACGTCTACCCGTATTTCTCTGCTGAAATCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGTGTTGGTGGTAATGTGGGTGGCGGCTGCGGCGGCGGTGGCGGAGGTGGCTACTTTCCTTTGGGTTTGTTGGATGGGAGAATGGATAATGCTGAAATGATGAACAATAGCAATTGCTCGAAGACGAAACAGTTGCCGTCGTCGAGTAATGCCTCATCGGTGCAGACGATTGCAGCCCGGGAACGGCGGAGGAGGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTTCAAATATGTCAAATTCTTGCAAGCCCAAGTCGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGACTCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTGGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTTCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

mRNA sequence

ATGGCGGCTCTCACTTTTTTCTCCAATTTTTACTCTGACCCTTCTTCAATCAATCCCCAATTCCCCTATTTCTCCCCCGAAATGTCGCCGGACCTCTTCTTTCTCCCTCCGCCACACCTCGATTACGTCCCTGCGATGCCCGATGACTCTGTTCTTTTCCCGACTGTCGCTCCGTTCTTTGACGATGCTTCTCCGTTTCTTTTCTCCGACGTCTACCCGTATTTCTCTGCTGAAATCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGTGTTGGTGGTAATGTGGGTGGCGGCTGCGGCGGCGGTGGCGGAGGTGGCTACTTTCCTTTGGGTTTGTTGGATGGGAGAATGGATAATGCTGAAATGATGAACAATAGCAATTGCTCGAAGACGAAACAGTTGCCGTCGTCGAGTAATGCCTCATCGGTGCAGACGATTGCAGCCCGGGAACGGCGGAGGAGGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTTCAAATATGTCAAATTCTTGCAAGCCCAAGTCGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGACTCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTGGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTTCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

Coding sequence (CDS)

ATGGCGGCTCTCACTTTTTTCTCCAATTTTTACTCTGACCCTTCTTCAATCAATCCCCAATTCCCCTATTTCTCCCCCGAAATGTCGCCGGACCTCTTCTTTCTCCCTCCGCCACACCTCGATTACGTCCCTGCGATGCCCGATGACTCTGTTCTTTTCCCGACTGTCGCTCCGTTCTTTGACGATGCTTCTCCGTTTCTTTTCTCCGACGTCTACCCGTATTTCTCTGCTGAAATCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGTGTTGGTGGTAATGTGGGTGGCGGCTGCGGCGGCGGTGGCGGAGGTGGCTACTTTCCTTTGGGTTTGTTGGATGGGAGAATGGATAATGCTGAAATGATGAACAATAGCAATTGCTCGAAGACGAAACAGTTGCCGTCGTCGAGTAATGCCTCATCGGTGCAGACGATTGCAGCCCGGGAACGGCGGAGGAGGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTTCAAATATGTCAAATTCTTGCAAGCCCAAGTCGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGACTCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTGGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTTCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

Protein sequence

MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVLFPTVAPFFDDASPFLFSDVYPYFSAEIFPFDEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGCGGGGGGGYFPLGLLDGRMDNAEMMNNSNCSKTKQLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISNSINQILKTSG
Homology
[Close]
BLAST of CmaCh18G005260 vs. Swiss-Prot
Match: BH052_ARATH (Transcription factor bHLH52 OS=Arabidopsis thaliana GN=BHLH52 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.7e-24
Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 1 

Query: 146 TKQLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQA 205
           T+Q  +     S Q+IAAR+RRRRIT KTQELG+LIPG  K NTAEM N+A KYVKFLQA
Sbjct: 126 TEQGDTKKRELSAQSIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQA 185

Query: 206 QVAILQLKQETEHELEEQET-EDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQ 265
           Q+ ILQLKQ     L+  +   ++Q +L S  IQEKL +EE C+VP+  VQ L     I 
Sbjct: 186 QIEILQLKQTKMQTLDSSKVGREMQFLLGSQEIQEKLSTEEVCVVPREMVQVLKAEECIL 245

Query: 266 SHPFISNSINQILKTS 280
           ++P IS  IN++L T+
Sbjct: 246 TNPKISRDINKLLSTN 261

[Close]
BLAST of CmaCh18G005260 vs. Swiss-Prot
Match: BH053_ARATH (Transcription factor bHLH53 OS=Arabidopsis thaliana GN=BHLH53 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-23
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           S Q+IAAR RRRRI  KT ELG+LIPGG K+NTAEM  +A KYVKFLQ+QV ILQL Q T
Sbjct: 166 SSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGILQLMQTT 225

Query: 217 EHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISNSINQIL 276
           +      + E   +L+S  IQEKL +EE CLVP   VQ+L     I   P IS  IN++L
Sbjct: 226 KKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISREINKLL 285

[Close]
BLAST of CmaCh18G005260 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.9e-08
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 159 QTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 212
           QT+AAR+RR RI+ K + L  L+PGG KM+TA ML+ A  Y+KFL+AQV  L+
Sbjct: 280 QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]
BLAST of CmaCh18G005260 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 159 QTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 212
           QT+ AR RR RI+ K + L  ++PGG KM+TA ML+ A +Y KFL+ QV ILQ
Sbjct: 123 QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]
BLAST of CmaCh18G005260 vs. Swiss-Prot
Match: LAX_ORYSJ (Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 147 KQLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQ 206
           ++ P +  ++  Q++AARERR RI+ + + L  L+PGG KM+T  ML  A  YVKFL+AQ
Sbjct: 33  RRRPGAKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKFLKAQ 92

Query: 207 VAILQ 212
           V + Q
Sbjct: 93  VTLHQ 97

[Close]
BLAST of CmaCh18G005260 vs. TrEMBL
Match: A0A0A0LY56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542450 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 6.0e-84
Identity = 200/310 (64.52%), Postives = 219/310 (70.65%), Query Frame = 1 

Query: 1   MAALTFFSNFYS-DPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAM---PDDSVLFPTV 60
           MAALT++SNFYS DPS     F YFSPE SPDL ++PPP L   PA     DDS+ +PT 
Sbjct: 1   MAALTYYSNFYSPDPSPYYHHFHYFSPEFSPDLSYVPPPQLLNHPAAFDYVDDSLFYPTA 60

Query: 61  APF-FDDASPFLFSDVYPYFSA-----------EIFPFDEFEFHYSKRQRIVLEQSFCYG 120
               FDDA PFLFSD YP FSA           + FPFDEFEFH  KRQR V E SFC G
Sbjct: 61  DTLLFDDALPFLFSDTYPCFSAPSVDEFLPVSSQFFPFDEFEFHCPKRQRAVFEHSFCCG 120

Query: 121 G-VG-GNVGGGCGGGGGGGYFPL-------------GLLDGRMDNAEMMNNSNCSKTKQL 180
           G VG GNVGGG G G G G+FP              G  D RMDNAEM N+   S+    
Sbjct: 121 GGVGDGNVGGG-GSGAGAGFFPSPPPPPPPLAEVFSGPWDSRMDNAEMRNDCLKSQPSPA 180

Query: 181 PSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAI 240
           PSS N  S QTIAARERRR+IT KTQELGEL+PGG KMNTAEMLNSAFKYVKFLQAQVAI
Sbjct: 181 PSSHNNLSAQTIAARERRRKITVKTQELGELVPGGSKMNTAEMLNSAFKYVKFLQAQVAI 240

Query: 241 LQLKQETEHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFIS 280
           LQLKQETE   E QETE+L+IL+S MIQEKLYSEE+CLVPKGF+QNLA+FPEIQSHP I 
Sbjct: 241 LQLKQETEQ--EGQETENLEILESTMIQEKLYSEEKCLVPKGFIQNLADFPEIQSHPSIF 300

[Close]
BLAST of CmaCh18G005260 vs. TrEMBL
Match: A0A067GDB5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041370mg PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.7e-31
Identity = 81/127 (63.78%), Postives = 100/127 (78.74%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           SVQ+IAARERRRRIT KTQELG+LIPGG +MNTAEM  +A KYVKFLQAQV +LQL Q  
Sbjct: 179 SVQSIAARERRRRITEKTQELGKLIPGGHRMNTAEMFQAASKYVKFLQAQVKVLQLIQPK 238

Query: 217 EHELEE---QETEDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISNSI 276
           + E++E      +DLQ +L S +IQEKLYSE++CLVPK FV+ LAN PEIQS P +   I
Sbjct: 239 QQEMKEPFHMHAQDLQNLLASPIIQEKLYSEDKCLVPKEFVETLANDPEIQSKPMVFQGI 298

Query: 277 NQILKTS 280
           +Q+L+T+
Sbjct: 299 DQLLRTN 305

[Close]
BLAST of CmaCh18G005260 vs. TrEMBL
Match: V4U7W4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017579mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           SVQ+IAARERRRRIT KTQELG+LIPGG +MNTAEM  +A KYVKFLQAQV +LQL Q  
Sbjct: 179 SVQSIAARERRRRITEKTQELGKLIPGGHRMNTAEMFQAASKYVKFLQAQVKVLQLIQPK 238

Query: 217 E-----HELEEQE--------TEDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEI 276
           +     H + +QE         +DLQ +L S +IQEKLYSE++CLVPK FV+ LAN PEI
Sbjct: 239 QQLLIVHHIMQQEMKEPFHMHAQDLQNLLASPIIQEKLYSEDKCLVPKEFVETLANDPEI 298

Query: 277 QSHPFISNSINQILKTS 280
           QS P +   I+Q+L+T+
Sbjct: 299 QSKPMVFQGIDQLLRTN 315

[Close]
BLAST of CmaCh18G005260 vs. TrEMBL
Match: M5WWF9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017597mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.9e-29
Identity = 77/138 (55.80%), Postives = 102/138 (73.91%), Query Frame = 1 

Query: 143 CSKTKQLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKF 202
           C+K  +    +   S Q+IAARERRRRIT KTQELG LIPG  KMNTAEML +A+KYVKF
Sbjct: 112 CAKMNKPNGGAVTLSAQSIAARERRRRITEKTQELGRLIPGATKMNTAEMLQAAYKYVKF 171

Query: 203 LQAQVAILQLKQETEHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEI 262
           LQAQV++L+L  ++      QE +DLQ + S ++QEKLY+EE+CLV K FVQ LAN  +I
Sbjct: 172 LQAQVSVLKLMTDSP---VHQEKKDLQAVASPIVQEKLYAEEKCLVSKEFVQVLANDHDI 231

Query: 263 QSHPFISNSINQILKTSG 281
           +S P + +S+ Q+L+T+G
Sbjct: 232 ESKPLLKDSVAQLLQTNG 246

[Close]
BLAST of CmaCh18G005260 vs. TrEMBL
Match: W9RFG9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017370 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.8e-27
Identity = 79/149 (53.02%), Postives = 104/149 (69.80%), Query Frame = 1 

Query: 134 NAEMMNNSNCSKTKQLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEML 193
           N EM ++     +    +S+ A S Q+IAARERRR+IT KTQELG+LIPGG KM TAEM 
Sbjct: 158 NQEMKSDMKRGNSSSGSTSTTAVSAQSIAARERRRKITEKTQELGKLIPGGNKMKTAEMF 217

Query: 194 NSAFKYVKFLQAQVAILQLKQETEHELEEQ--ETEDLQILDSAMIQEKLYSEEQCLVPKG 253
            +A+KYVKFLQAQ+A+L L +    + E+     ++LQ+L S +IQEKLYS+E+CLVPK 
Sbjct: 218 QAAYKYVKFLQAQLAVLLLIRSIREQREQSLVHIKELQVLASPIIQEKLYSDEKCLVPKE 277

Query: 254 FVQNLANFPEIQSHPFISNSINQILKTSG 281
           FVQ LAN  EIQS  F  + I  +L+ +G
Sbjct: 278 FVQALANNHEIQSKSFFED-IEHLLQING 305

[Close]
BLAST of CmaCh18G005260 vs. TAIR10
Match: AT1G30670.1 (AT1G30670.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-25
Identity = 72/136 (52.94%), Postives = 92/136 (67.65%), Query Frame = 1 

Query: 146 TKQLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQA 205
           T+Q  +     S Q+IAAR+RRRRIT KTQELG+LIPG  K NTAEM N+A KYVKFLQA
Sbjct: 126 TEQGDTKKRELSAQSIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQA 185

Query: 206 QVAILQLKQETEHELEEQET-EDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQ 265
           Q+ ILQLKQ     L+  +   ++Q +L S  IQEKL +EE C+VP+  VQ L     I 
Sbjct: 186 QIEILQLKQTKMQTLDSSKVGREMQFLLGSQEIQEKLSTEEVCVVPREMVQVLKAEECIL 245

Query: 266 SHPFISNSINQILKTS 280
           ++P IS  IN++L T+
Sbjct: 246 TNPKISRDINKLLSTN 261

[Close]
BLAST of CmaCh18G005260 vs. TAIR10
Match: AT2G34820.1 (AT2G34820.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-24
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           S Q+IAAR RRRRI  KT ELG+LIPGG K+NTAEM  +A KYVKFLQ+QV ILQL Q T
Sbjct: 166 SSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGILQLMQTT 225

Query: 217 EHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISNSINQIL 276
           +      + E   +L+S  IQEKL +EE CLVP   VQ+L     I   P IS  IN++L
Sbjct: 226 KKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISREINKLL 285

[Close]
BLAST of CmaCh18G005260 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-09
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 159 QTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 212
           QT+AAR+RR RI+ K + L  L+PGG KM+TA ML+ A  Y+KFL+AQV  L+
Sbjct: 280 QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]
BLAST of CmaCh18G005260 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-09
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 159 QTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 212
           QT+ AR RR RI+ K + L  ++PGG KM+TA ML+ A +Y KFL+ QV ILQ
Sbjct: 123 QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]
BLAST of CmaCh18G005260 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 1 

Query: 159 QTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 211
           Q++AAR RR RI+ + + L  L+PGG KM+TA ML+ A +YVKFL+ Q+ +L
Sbjct: 130 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]
BLAST of CmaCh18G005260 vs. NCBI nr
Match: gi|449435928|ref|XP_004135746.1| (PREDICTED: transcription factor bHLH52 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 8.7e-84
Identity = 200/310 (64.52%), Postives = 219/310 (70.65%), Query Frame = 1 

Query: 1   MAALTFFSNFYS-DPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAM---PDDSVLFPTV 60
           MAALT++SNFYS DPS     F YFSPE SPDL ++PPP L   PA     DDS+ +PT 
Sbjct: 1   MAALTYYSNFYSPDPSPYYHHFHYFSPEFSPDLSYVPPPQLLNHPAAFDYVDDSLFYPTA 60

Query: 61  APF-FDDASPFLFSDVYPYFSA-----------EIFPFDEFEFHYSKRQRIVLEQSFCYG 120
               FDDA PFLFSD YP FSA           + FPFDEFEFH  KRQR V E SFC G
Sbjct: 61  DTLLFDDALPFLFSDTYPCFSAPSVDEFLPVSSQFFPFDEFEFHCPKRQRAVFEHSFCCG 120

Query: 121 G-VG-GNVGGGCGGGGGGGYFPL-------------GLLDGRMDNAEMMNNSNCSKTKQL 180
           G VG GNVGGG G G G G+FP              G  D RMDNAEM N+   S+    
Sbjct: 121 GGVGDGNVGGG-GSGAGAGFFPSPPPPPPPLAEVFSGPWDSRMDNAEMRNDCLKSQPSPA 180

Query: 181 PSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAI 240
           PSS N  S QTIAARERRR+IT KTQELGEL+PGG KMNTAEMLNSAFKYVKFLQAQVAI
Sbjct: 181 PSSHNNLSAQTIAARERRRKITVKTQELGELVPGGSKMNTAEMLNSAFKYVKFLQAQVAI 240

Query: 241 LQLKQETEHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFIS 280
           LQLKQETE   E QETE+L+IL+S MIQEKLYSEE+CLVPKGF+QNLA+FPEIQSHP I 
Sbjct: 241 LQLKQETEQ--EGQETENLEILESTMIQEKLYSEEKCLVPKGFIQNLADFPEIQSHPSIF 300

[Close]
BLAST of CmaCh18G005260 vs. NCBI nr
Match: gi|659068721|ref|XP_008445817.1| (PREDICTED: transcription factor bHLH52 [Cucumis melo])

HSP 1 Score: 318.5 bits (815), Expect = 1.1e-83
Identity = 204/310 (65.81%), Postives = 224/310 (72.26%), Query Frame = 1 

Query: 1   MAALTFFSNFYS-DPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAM---PDDSVLFPTV 60
           MAALTF SNFYS DPSS    F YFSPE SPDL ++PPPHL   PA     DDSV +P  
Sbjct: 1   MAALTFHSNFYSPDPSSY---FHYFSPEFSPDLSYVPPPHLLSDPAAFPYVDDSVFYPAA 60

Query: 61  APFF-DDASPFLFSDVYPYFSA-----------EIFPFDEFEFHYSKRQRIVLEQSFCYG 120
              F DDA PFLFSD YPYFSA           + FPFDEFEFH  KRQR V EQSFC G
Sbjct: 61  DTLFSDDAFPFLFSDAYPYFSAPSVDEFLPVSSQFFPFDEFEFHCPKRQRAVFEQSFCCG 120

Query: 121 -GVG-GNVGGGC-GGGGGGGYFP-------LGLLDGRMDNAEMMNNSNCSKTKQLPS--- 180
            GVG GNVGGG  G G G G+FP        G  D RMDNAEM N+  C K++  P+   
Sbjct: 121 EGVGDGNVGGGGEGAGAGAGFFPPPLAEFFSGPWDSRMDNAEMTND--CLKSQPSPAPPA 180

Query: 181 -SSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 240
            SSN  S QTIAARERRR+IT KTQELGEL+PGG KMNTAEMLNSAFKYVKFLQAQVAIL
Sbjct: 181 PSSNNLSAQTIAARERRRKITVKTQELGELVPGGSKMNTAEMLNSAFKYVKFLQAQVAIL 240

Query: 241 QLKQETEHELEE----QETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHP 277
           QLKQETE E E+    QETE+L+IL+S +IQEKLY EE+CLVPKGF+QNLA+FPEIQSHP
Sbjct: 241 QLKQETEQEQEQEQEGQETENLKILESTLIQEKLYLEEKCLVPKGFIQNLADFPEIQSHP 300

[Close]
BLAST of CmaCh18G005260 vs. NCBI nr
Match: gi|641858867|gb|KDO77589.1| (hypothetical protein CISIN_1g041370mg [Citrus sinensis])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 81/127 (63.78%), Postives = 100/127 (78.74%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           SVQ+IAARERRRRIT KTQELG+LIPGG +MNTAEM  +A KYVKFLQAQV +LQL Q  
Sbjct: 179 SVQSIAARERRRRITEKTQELGKLIPGGHRMNTAEMFQAASKYVKFLQAQVKVLQLIQPK 238

Query: 217 EHELEE---QETEDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISNSI 276
           + E++E      +DLQ +L S +IQEKLYSE++CLVPK FV+ LAN PEIQS P +   I
Sbjct: 239 QQEMKEPFHMHAQDLQNLLASPIIQEKLYSEDKCLVPKEFVETLANDPEIQSKPMVFQGI 298

Query: 277 NQILKTS 280
           +Q+L+T+
Sbjct: 299 DQLLRTN 305

[Close]
BLAST of CmaCh18G005260 vs. NCBI nr
Match: gi|568828271|ref|XP_006468467.1| (PREDICTED: transcription factor bHLH52 [Citrus sinensis])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 80/124 (64.52%), Postives = 97/124 (78.23%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           SVQ+IAARERRRRIT KTQELG+LIPGG +MNTAEM  +A KYVKFLQAQV +LQL Q  
Sbjct: 179 SVQSIAARERRRRITEKTQELGKLIPGGHRMNTAEMFQAASKYVKFLQAQVKVLQLIQPK 238

Query: 217 EHELEEQETEDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISNSINQI 276
           + E      +DLQ +L S +IQEKLYSE++CLVPK FV+ LAN PEIQS P +   I+Q+
Sbjct: 239 QQEPFHMHAQDLQNLLASPIIQEKLYSEDKCLVPKEFVETLANDPEIQSKPMVFQGIDQL 298

Query: 277 LKTS 280
           L+T+
Sbjct: 299 LRTN 302

[Close]
BLAST of CmaCh18G005260 vs. NCBI nr
Match: gi|567913027|ref|XP_006448827.1| (hypothetical protein CICLE_v10017579mg [Citrus clementina])

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 1 

Query: 157 SVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQET 216
           SVQ+IAARERRRRIT KTQELG+LIPGG +MNTAEM  +A KYVKFLQAQV +LQL Q  
Sbjct: 179 SVQSIAARERRRRITEKTQELGKLIPGGHRMNTAEMFQAASKYVKFLQAQVKVLQLIQPK 238

Query: 217 E-----HELEEQE--------TEDLQ-ILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEI 276
           +     H + +QE         +DLQ +L S +IQEKLYSE++CLVPK FV+ LAN PEI
Sbjct: 239 QQLLIVHHIMQQEMKEPFHMHAQDLQNLLASPIIQEKLYSEDKCLVPKEFVETLANDPEI 298

Query: 277 QSHPFISNSINQILKTS 280
           QS P +   I+Q+L+T+
Sbjct: 299 QSKPMVFQGIDQLLRTN 315

The following BLAST results are available for this feature:
BLAST of CmaCh18G005260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH052_ARATH7.7e-2452.94Transcription factor bHLH52 OS=Arabidopsis thaliana GN=BHLH52 PE=2 SV=1[more]
BH053_ARATH3.8e-2355.83Transcription factor bHLH53 OS=Arabidopsis thaliana GN=BHLH53 PE=2 SV=1[more]
BH087_ARATH5.9e-0856.60Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1[more]
IND_ARATH1.0e-0754.72Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3[more]
LAX_ORYSJ2.9e-0746.15Transcription factor LAX PANICLE OS=Oryza sativa subsp. japonica GN=LAX PE=1 SV=... [more]
BLAST of CmaCh18G005260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY56_CUCSA6.0e-8464.52Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542450 PE=4 SV=1[more]
A0A067GDB5_CITSI2.7e-3163.78Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g041370mg PE=4 SV=1[more]
V4U7W4_9ROSI1.1e-2959.85Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017579mg PE=4 SV=1[more]
M5WWF9_PRUPE1.9e-2955.80Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017597mg PE=4 SV=1[more]
W9RFG9_9ROSA1.8e-2753.02Uncharacterized protein OS=Morus notabilis GN=L484_017370 PE=4 SV=1[more]
BLAST of CmaCh18G005260 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30670.14.3e-2552.94 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G34820.12.2e-2455.83 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G21330.13.3e-0956.60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G00120.15.7e-0954.72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G09750.11.7e-0851.92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of CmaCh18G005260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435928|ref|XP_004135746.1|8.7e-8464.52PREDICTED: transcription factor bHLH52 [Cucumis sativus][more]
gi|659068721|ref|XP_008445817.1|1.1e-8365.81PREDICTED: transcription factor bHLH52 [Cucumis melo][more]
gi|641858867|gb|KDO77589.1|3.8e-3163.78hypothetical protein CISIN_1g041370mg [Citrus sinensis][more]
gi|568828271|ref|XP_006468467.1|3.8e-3164.52PREDICTED: transcription factor bHLH52 [Citrus sinensis][more]
gi|567913027|ref|XP_006448827.1|1.6e-2959.85hypothetical protein CICLE_v10017579mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G005260.1CmaCh18G005260.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 160..221
score: 3.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 162..204
score: 3.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 160..209
score: 4.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 154..203
score: 12
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 153..215
score: 6.15
NoneNo IPR availablePANTHERPTHR16223FAMILY NOT NAMEDcoord: 156..258
score: 4.5
NoneNo IPR availablePANTHERPTHR16223:SF49TRANSCRIPTION FACTOR BHLH52-RELATEDcoord: 156..258
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G005260Cucsa.167440Cucumber (Gy14) v1cgycmaB0476
CmaCh18G005260Cla019752Watermelon (97103) v1cmawmB369
CmaCh18G005260Csa1G542450Cucumber (Chinese Long) v2cmacuB392
CmaCh18G005260MELO3C002870Melon (DHL92) v3.5.1cmameB364
CmaCh18G005260ClCG03G008540Watermelon (Charleston Gray)cmawcgB356
CmaCh18G005260CSPI01G25300Wild cucumber (PI 183967)cmacpiB396
CmaCh18G005260CmoCh13G004970Cucurbita moschata (Rifu)cmacmoB398
CmaCh18G005260CmoCh18G005050Cucurbita moschata (Rifu)cmacmoB407
CmaCh18G005260Lsi02G009920Bottle gourd (USVL1VR-Ls)cmalsiB369
CmaCh18G005260Cp4.1LG09g07130Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G005260Cp4.1LG20g05790Cucurbita pepo (Zucchini)cmacpeB438
CmaCh18G005260MELO3C002870.2Melon (DHL92) v3.6.1cmamedB423
CmaCh18G005260CsaV3_1G037610Cucumber (Chinese Long) v3cmacucB0469
CmaCh18G005260Cla97C03G059800Watermelon (97103) v2cmawmbB415
CmaCh18G005260Bhi08G000815Wax gourdcmawgoB0532
CmaCh18G005260Carg21422Silver-seed gourdcarcmaB0552
CmaCh18G005260Carg25392Silver-seed gourdcarcmaB0623
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh18G005260CmaCh13G004630Cucurbita maxima (Rimu)cmacmaB216
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G005260Cucurbita moschata (Rifu)cmacmoB417
CmaCh18G005260Cucurbita moschata (Rifu)cmacmoB429
CmaCh18G005260Wild cucumber (PI 183967)cmacpiB426
CmaCh18G005260Cucumber (Chinese Long) v2cmacuB423
CmaCh18G005260Melon (DHL92) v3.5.1cmameB382
CmaCh18G005260Watermelon (Charleston Gray)cmawcgB345
CmaCh18G005260Watermelon (97103) v1cmawmB382
CmaCh18G005260Cucurbita pepo (Zucchini)cmacpeB437
CmaCh18G005260Cucumber (Gy14) v2cgybcmaB087
CmaCh18G005260Cucumber (Gy14) v2cgybcmaB769
CmaCh18G005260Melon (DHL92) v3.6.1cmamedB442
CmaCh18G005260Cucumber (Chinese Long) v3cmacucB0507
CmaCh18G005260Watermelon (97103) v2cmawmbB398
CmaCh18G005260Wax gourdcmawgoB0516
CmaCh18G005260Cucurbita maxima (Rimu)cmacmaB397
CmaCh18G005260Cucurbita maxima (Rimu)cmacmaB414
CmaCh18G005260Cucumber (Gy14) v1cgycmaB0038