Carg25392 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25392
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription factor bHLH52
Location	Cucurbita_argyrosperma_scaffold_232 : 177306 .. 178133 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCTCACTTTTTTCTCCAATTTTTACTCTGACCCTTCTTCAATCAATCCCCAATTCCCCTATTTCTCCCCCGAAATGTCGCCGGACCTCTTCTTTCTCCCTCCACCGCACCTCGATTACGTCCCTGCCATGCCCGATGACTCTGTTTTTATCCCGACTGTTGCTCCGTTCTTCGACGACGCTTCTCCGTTTCTTTTCTCCGATGTCTACCCGTATTTCTCCGCTGAAATCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGTGTTGGTGGTAATGTGGGTGGCGGCAGAGGTGGCTACTTTCCTTCGGGTTTGTTGGATGGGAGAATGGATAATGCTGAAATGATGAACAATGGCAATTGCTCGAAGACGAAACAGTTGGCGTCGCCGAGTAACGCCTTATCTGTGCAGACAATTGCGGCCCGGGAACGGCGGAGGAAGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTACAAATATGTCAAATTCTTGCAAGCCCAAGTCGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGAATCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTAGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTCCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

mRNA sequence

ATGGCGGCTCTCACTTTTTTCTCCAATTTTTACTCTGACCCTTCTTCAATCAATCCCCAATTCCCCTATTTCTCCCCCGAAATGTCGCCGGACCTCTTCTTTCTCCCTCCACCGCACCTCGATTACGTCCCTGCCATGCCCGATGACTCTGTTTTTATCCCGACTGTTGCTCCGTTCTTCGACGACGCTTCTCCGTTTCTTTTCTCCGATGTCTACCCGTATTTCTCCGCTGAAATCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGTGTTGGTGGTAATGTGGGTGGCGGCAGAGGTGGCTACTTTCCTTCGGGTTTGTTGGATGGGAGAATGGATAATGCTGAAATGATGAACAATGGCAATTGCTCGAAGACGAAACAGTTGGCGTCGCCGAGTAACGCCTTATCTGTGCAGACAATTGCGGCCCGGGAACGGCGGAGGAAGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTACAAATATGTCAAATTCTTGCAAGCCCAAGTCGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGAATCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTAGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTCCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

Coding sequence (CDS)

ATGGCGGCTCTCACTTTTTTCTCCAATTTTTACTCTGACCCTTCTTCAATCAATCCCCAATTCCCCTATTTCTCCCCCGAAATGTCGCCGGACCTCTTCTTTCTCCCTCCACCGCACCTCGATTACGTCCCTGCCATGCCCGATGACTCTGTTTTTATCCCGACTGTTGCTCCGTTCTTCGACGACGCTTCTCCGTTTCTTTTCTCCGATGTCTACCCGTATTTCTCCGCTGAAATCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGTGTTGGTGGTAATGTGGGTGGCGGCAGAGGTGGCTACTTTCCTTCGGGTTTGTTGGATGGGAGAATGGATAATGCTGAAATGATGAACAATGGCAATTGCTCGAAGACGAAACAGTTGGCGTCGCCGAGTAACGCCTTATCTGTGCAGACAATTGCGGCCCGGGAACGGCGGAGGAAGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTACAAATATGTCAAATTCTTGCAAGCCCAAGTCGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGAATCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTAGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTCCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

Protein sequence

MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAEIFPFDEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGRGGYFPSGLLDGRMDNAEMMNNGNCSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTSG

Homology

[Close]

BLAST of Carg25392 vs. NCBI nr
Match: XP_023542438.1 (transcription factor bHLH52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.1 bits (1185), Expect = 2.7e-126
Identity = 245/276 (88.77%), Postives = 248/276 (89.86%), Query Frame = 0


Query: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF 60
           MAALTFFSNFYSDPSSINPQFP FSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF
Sbjct: 1   MAALTFFSNFYSDPSSINPQFPCFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF 60

Query: 61  DDASPFLXXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGRG--GYF 120
           D+ASPFL                EFEFHYSKRQRIVLEQSFCYGGVGG         GYF
Sbjct: 61  DNASPFLFSDVYPYFSAEFFPFDEFEFHYSKRQRIVLEQSFCYGGVGGXXXXXXXXCGYF 120

Query: 121 PSGLLDGRMDNAEMMNNGNCSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPG 180
           PS LLDGRMDNAEMMNNGNCSKTKQLASPSNALSVQTIAARERRR+ITAKTQELGELIPG
Sbjct: 121 PSSLLDGRMDNAEMMNNGNCSKTKQLASPSNALSVQTIAARERRRRITAKTQELGELIPG 180

Query: 181 GVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSE 240
           GVKMNTAEMLNSA+KYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSE
Sbjct: 181 GVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSE 240

Query: 241 EQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTS 275
           EQCLVPKGFVQNLANFPEIQSHP ISNSINQILKTS
Sbjct: 241 EQCLVPKGFVQNLANFPEIQSHPFISNSINQILKTS 276

[Close]

BLAST of Carg25392 vs. NCBI nr
Match: XP_022955064.1 (transcription factor bHLH52-like [Cucurbita moschata])

HSP 1 Score: 459.9 bits (1182), Expect = 6.0e-126
Identity = 244/277 (88.09%), Postives = 246/277 (88.81%), Query Frame = 0


Query: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF 60
           MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF
Sbjct: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF 60

Query: 61  DDASPFLXXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFCYGGVG--GNVGGGRGGYF 120
           DDASPFL                EFEFHYSKRQRIVLEQSFCYGGVG            F
Sbjct: 61  DDASPFLFSDVYPYFSAGFFPFDEFEFHYSKRQRIVLEQSFCYGGVGXXXXXXXXXXXXF 120

Query: 121 PSGLLDGRMDNAEMMNNGNCSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPG 180
           PSGLLDGR+DN EMMNNGNCSKTKQL SPSN LSVQTIAARERRRKITAKTQELGELIPG
Sbjct: 121 PSGLLDGRVDNVEMMNNGNCSKTKQLVSPSNTLSVQTIAARERRRKITAKTQELGELIPG 180

Query: 181 GVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSE 240
           GVKMNTAEMLNSA+KYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSE
Sbjct: 181 GVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSE 240

Query: 241 EQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTSG 276
           EQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTSG
Sbjct: 241 EQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTSG 277

[Close]

BLAST of Carg25392 vs. NCBI nr
Match: XP_022994858.1 (uncharacterized protein LOC111490459 [Cucurbita maxima])

HSP 1 Score: 447.6 bits (1150), Expect = 3.1e-122
Identity = 254/280 (90.71%), Postives = 257/280 (91.79%), Query Frame = 0


Query: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFF 60
           MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSV  PTVAPFF
Sbjct: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVLFPTVAPFF 60

Query: 61  DDASPFLXXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFCYGGVG-----GNVGGGRG 120
           DDASPFLXXXXXXXXXXXXXXX EFEFHYSKRQRIVLEQSFCYGGVG             
Sbjct: 61  DDASPFLXXXXXXXXXXXXXXXDEFEFHYSKRQRIVLEQSFCYGGVGXXXXXXXXXXXXX 120

Query: 121 GYFPSGLLDGRMDNAEMMNNGNCSKTKQLASPSNALSVQTIAARERRRKITAKTQELGEL 180
            YFP GLLDGRMDNAEMMNN NCSKTKQL S SNA SVQTIAARERRR+ITAKTQELGEL
Sbjct: 121 XYFPLGLLDGRMDNAEMMNNSNCSKTKQLPSSSNASSVQTIAARERRRRITAKTQELGEL 180

Query: 181 IPGGVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKL 240
           IPGGVKMNTAEMLNSA+KYVKFLQAQVAILQLKQETEHELEEQETEDLQIL+SAMIQEKL
Sbjct: 181 IPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILDSAMIQEKL 240

Query: 241 YSEEQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTSG 276
           YSEEQCLVPKGFVQNLANFPEIQSHP ISNSINQILKTSG
Sbjct: 241 YSEEQCLVPKGFVQNLANFPEIQSHPFISNSINQILKTSG 280

[Close]

BLAST of Carg25392 vs. NCBI nr
Match: XP_022927111.1 (transcription factor bHLH52-like [Cucurbita moschata])

HSP 1 Score: 307.0 bits (785), Expect = 6.5e-80
Identity = 186/299 (62.21%), Postives = 207/299 (69.23%), Query Frame = 0


Query: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHL------DYVPAMPDDSVFIP 60
           MAAL+F+SNF SDPSS + QF  FSPE+SP+LF LPPP L      DY+ A  D SVF P
Sbjct: 1   MAALSFYSNFSSDPSSYHHQFHPFSPEISPELFHLPPPQLLPDPAFDYLHAAVDHSVFFP 60

Query: 61  T-VAPFFDDASPFL-----------XXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFC 120
           T  APFFDD SPF+                           EFEF+  KRQR+V+EQSFC
Sbjct: 61  TATAPFFDDVSPFVFSDVYPYFPTPAVDSFVPVSAEFFPCDEFEFYCPKRQRVVMEQSFC 120

Query: 121 YGGVGGNVGGGRGGYFP-----SGLLDGRMDNAEMMNNGNCSKTKQLASP-----SNALS 180
           YGG GGNVGG  GGYFP     S   DGR+ NAE+MN G+C K     +P     SN LS
Sbjct: 121 YGGGGGNVGGD-GGYFPLPEFFSDQWDGRLGNAELMNKGDCLKGTLTPAPLPAPSSNNLS 180

Query: 181 VQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETE 240
            QTIAARERRRKITAKTQELGEL+PGG KMNTAEML+SA+KYVKFLQAQVAILQ+KQE  
Sbjct: 181 AQTIAARERRRKITAKTQELGELVPGGSKMNTAEMLSSAFKYVKFLQAQVAILQVKQEXX 240

Query: 241 HELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISNSINQIL 272
                    DLQILES MIQEKLY+EE+CLVPKGFVQNL N PEIQS+PSI NSINQIL
Sbjct: 241 XXXXXXXXXDLQILESTMIQEKLYAEEKCLVPKGFVQNLVNSPEIQSNPSILNSINQIL 298

[Close]

BLAST of Carg25392 vs. NCBI nr
Match: XP_023001636.1 (transcription factor bHLH52 [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 5.3e-74
Identity = 181/306 (59.15%), Postives = 200/306 (65.36%), Query Frame = 0


Query: 1   MAALTFFSNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHL------DYVPAMPDDSVFIP 60
           MAAL+F+SNF SDPSS + QF  FSPE+SP+LF LPPP L      DY+PA  D SVF P
Sbjct: 1   MAALSFYSNFSSDPSSYHHQFHPFSPEISPELFHLPPPQLLPDPTFDYLPAAVDHSVFFP 60

Query: 61  T-VAPFFDDASPFL-----------XXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFC 120
           T  APFFDD SPF+                           EFEF+  KRQR+V+EQSFC
Sbjct: 61  TATAPFFDDVSPFVFSDVYPYFPTPAVDEFVPVSAEFFPCDEFEFYCPKRQRVVMEQSFC 120

Query: 121 YGGVGGNVGGGRGGYFP-----SGLLDGRMDNAEMMNNGNCSK-TKQLA--------SPS 180
           YGG GGNV GG GGYFP     S   DGR+ NAEMMN G+C K T  L            
Sbjct: 121 YGGGGGNV-GGEGGYFPLPEFFSDQWDGRLGNAEMMNKGDCLKGTPTLVXXXXXXXXXXX 180

Query: 181 NALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQLK 240
                 TIAARERRRKITAKTQELGEL+PGG KMNTAEML+SA+KYVKFLQAQVAILQ  
Sbjct: 181 XXXXXXTIAARERRRKITAKTQELGELVPGGSKMNTAEMLSSAFKYVKFLQAQVAILQXX 240

Query: 241 QETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISNSIN 275
                         LQILES MIQEKLY+EE+CLVPKGFVQNLAN  EIQS+PSI NSIN
Sbjct: 241 XXXXXXXXXXXXXXLQILESTMIQEKLYAEEKCLVPKGFVQNLANSSEIQSNPSILNSIN 300

[Close]

BLAST of Carg25392 vs. TAIR10
Match: AT2G34820.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 5.6e-25
Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 146 SPSNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAIL 205
           S    LS Q+IAAR RRR+I  KT ELG+LIPGG K+NTAEM  +A KYVKFLQ+QV IL
Sbjct: 160 SKKPTLSSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGIL 219

Query: 206 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 265
           QL Q T+      + E   +LES  IQEKL +EE CLVP   VQ+L     I   P+IS 
Sbjct: 220 QLMQTTKKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISR 279

Query: 266 SINQIL 272
            IN++L
Sbjct: 280 EINKLL 285

[Close]

BLAST of Carg25392 vs. TAIR10
Match: AT1G30670.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-23
Identity = 97/278 (34.89%), Postives = 135/278 (48.56%), Query Frame = 0


Query: 8   SNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFL 67
           S F+ +     P +P     +SP LF        Y   +P   +F+P+      + S  L
Sbjct: 8   SFFFQEQPQHQPLYP--DEALSPSLFGFDHYDHFYESFLPSQEIFLPSPKTRVFNESQEL 67

Query: 68  XXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGRGGYFPSGLLDGRM 127
                              FH  K Q+++ + SF +             Y    LLD  +
Sbjct: 68  D-----------------SFHTPKHQKLI-DSSFHFNSHDPFSPSPESNY----LLDSYI 127

Query: 128 DNA---------EMMNNGNCSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPG 187
             A         +  +      T+Q  +    LS Q+IAAR+RRR+IT KTQELG+LIPG
Sbjct: 128 TEASNISKFQAPDFSSTFKVGWTEQGDTKKRELSAQSIAARKRRRRITEKTQELGKLIPG 187

Query: 188 GVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETEHELEEQET-EDLQ-ILESAMIQEKLY 247
             K NTAEM N+A KYVKFLQAQ+ ILQLKQ     L+  +   ++Q +L S  IQEKL 
Sbjct: 188 SQKHNTAEMFNAAAKYVKFLQAQIEILQLKQTKMQTLDSSKVGREMQFLLGSQEIQEKLS 247

Query: 248 SEEQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTS 275
           +EE C+VP+  VQ L     I ++P IS  IN++L T+
Sbjct: 248 TEEVCVVPREMVQVLKAEECILTNPKISRDINKLLSTN 261

[Close]

BLAST of Carg25392 vs. TAIR10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-09
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 154 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQ 207
           QT+AAR+RR +I+ K + L  L+PGG KM+TA ML+ A  Y+KFL+AQV  L+
Sbjct: 280 QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]

BLAST of Carg25392 vs. TAIR10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 154 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQ 207
           QT+ AR RR +I+ K + L  ++PGG KM+TA ML+ A +Y KFL+ QV ILQ
Sbjct: 123 QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of Carg25392 vs. TAIR10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 3.6e-08
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 154 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAIL 206
           Q++AAR RR +I+ + + L  L+PGG KM+TA ML+ A +YVKFL+ Q+ +L
Sbjct: 130 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of Carg25392 vs. Swiss-Prot
Match: sp|Q84RD0|BH053_ARATH (Transcription factor bHLH53 OS=Arabidopsis thaliana OX=3702 GN=BHLH53 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 69/126 (54.76%), Postives = 83/126 (65.87%), Query Frame = 0


Query: 146 SPSNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAIL 205
           S    LS Q+IAAR RRR+I  KT ELG+LIPGG K+NTAEM  +A KYVKFLQ+QV IL
Sbjct: 160 SKKPTLSSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGIL 219

Query: 206 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 265
           QL Q T+      + E   +LES  IQEKL +EE CLVP   VQ+L     I   P+IS 
Sbjct: 220 QLMQTTKKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISR 279

Query: 266 SINQIL 272
            IN++L
Sbjct: 280 EINKLL 285

[Close]

BLAST of Carg25392 vs. Swiss-Prot
Match: sp|Q9SA82|BH052_ARATH (Transcription factor bHLH52 OS=Arabidopsis thaliana OX=3702 GN=BHLH52 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.2e-22
Identity = 97/278 (34.89%), Postives = 135/278 (48.56%), Query Frame = 0


Query: 8   SNFYSDPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFL 67
           S F+ +     P +P     +SP LF        Y   +P   +F+P+      + S  L
Sbjct: 8   SFFFQEQPQHQPLYP--DEALSPSLFGFDHYDHFYESFLPSQEIFLPSPKTRVFNESQEL 67

Query: 68  XXXXXXXXXXXXXXXXEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGRGGYFPSGLLDGRM 127
                              FH  K Q+++ + SF +             Y    LLD  +
Sbjct: 68  D-----------------SFHTPKHQKLI-DSSFHFNSHDPFSPSPESNY----LLDSYI 127

Query: 128 DNA---------EMMNNGNCSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPG 187
             A         +  +      T+Q  +    LS Q+IAAR+RRR+IT KTQELG+LIPG
Sbjct: 128 TEASNISKFQAPDFSSTFKVGWTEQGDTKKRELSAQSIAARKRRRRITEKTQELGKLIPG 187

Query: 188 GVKMNTAEMLNSAYKYVKFLQAQVAILQLKQETEHELEEQET-EDLQ-ILESAMIQEKLY 247
             K NTAEM N+A KYVKFLQAQ+ ILQLKQ     L+  +   ++Q +L S  IQEKL 
Sbjct: 188 SQKHNTAEMFNAAAKYVKFLQAQIEILQLKQTKMQTLDSSKVGREMQFLLGSQEIQEKLS 247

Query: 248 SEEQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTS 275
           +EE C+VP+  VQ L     I ++P IS  IN++L T+
Sbjct: 248 TEEVCVVPREMVQVLKAEECILTNPKISRDINKLLSTN 261

[Close]

BLAST of Carg25392 vs. Swiss-Prot
Match: sp|Q8S3D2|BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 154 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQ 207
           QT+AAR+RR +I+ K + L  L+PGG KM+TA ML+ A  Y+KFL+AQV  L+
Sbjct: 280 QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]

BLAST of Carg25392 vs. Swiss-Prot
Match: sp|O81313|IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 2.2e-07
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 154 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQ 207
           QT+ AR RR +I+ K + L  ++PGG KM+TA ML+ A +Y KFL+ QV ILQ
Sbjct: 123 QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of Carg25392 vs. Swiss-Prot
Match: sp|Q9LXD8|HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.5e-07
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 154 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAIL 206
           Q++AAR RR +I+ + + L  L+PGG KM+TA ML+ A +YVKFL+ Q+ +L
Sbjct: 130 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of Carg25392 vs. TrEMBL
Match: tr|A0A0A0LY56|A0A0A0LY56_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G542450 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 176/320 (55.00%), Postives = 194/320 (60.62%), Query Frame = 0


Query: 1   MAALTFFSNFYS-DPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPA---MPDDSVFIPTV 60
           MAALT++SNFYS DPS     F YFSPE SPDL ++PPP L   PA     DDS+F PT 
Sbjct: 1   MAALTYYSNFYSPDPSPYYHHFHYFSPEFSPDLSYVPPPQLLNHPAAFDYVDDSLFYPTA 60

Query: 61  ---------------------APFFDDASPFLXXXXXXXXXXXXXXXXEFEFHYSKRQRI 120
                                AP  D+  P                  EFEFH  KRQR 
Sbjct: 61  DTLXXXXXXXXXXXXXYPCFSAPSVDEFLP---------VSSQFFPFDEFEFHCPKRQRA 120

Query: 121 VLEQSFCYGGVGGNVGGGRGGYFP-------------------SGLLDGRMDNAEMMNNG 180
           V E SFC GG                                 SG  D RMDNAEM N  
Sbjct: 121 VFEHSFCCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAEVFSGPWDSRMDNAEMRN-- 180

Query: 181 NCSKTKQLASPS--NALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKY 240
           +C K++   +PS  N LS QTIAARERRRKIT KTQELGEL+PGG KMNTAEMLNSA+KY
Sbjct: 181 DCLKSQPSPAPSSHNNLSAQTIAARERRRKITVKTQELGELVPGGSKMNTAEMLNSAFKY 240

Query: 241 VKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANF 275
           VKFLQAQVAILQLKQETE   E QETE+L+ILES MIQEKLYSEE+CLVPKGF+QNLA+F
Sbjct: 241 VKFLQAQVAILQLKQETEQ--EGQETENLEILESTMIQEKLYSEEKCLVPKGFIQNLADF 300

[Close]

BLAST of Carg25392 vs. TrEMBL
Match: tr|A0A1S3BEE9|A0A1S3BEE9_CUCME (transcription factor bHLH52 OS=Cucumis melo OX=3656 GN=LOC103488727 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 163/323 (50.46%), Postives = 181/323 (56.04%), Query Frame = 0


Query: 1   MAALTFFSNFYS-DPSSINPQFPYFSPEMSPDLFFLPPPHLDYVPA---MPDDS------ 60
           MAALTF SNFYS DPSS    F YFSPE SPDL ++PPPHL   PA     DDS      
Sbjct: 1   MAALTFHSNFYSPDPSS---YFHYFSPEFSPDLSYVPPPHLLSDPAAFPYVDDSXXXXXX 60

Query: 61  -------------------VFIPTVAPFFDDASPFLXXXXXXXXXXXXXXXXEFEFHYSK 120
                                 P+V  F   +S F                 EFEFH  K
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXAPSVDEFLPVSSQFF-------------PFDEFEFHCPK 120

Query: 121 RQRIVLEQSFCYG--------GVGGNVGGGRGGYFP-------SGLLDGRMDNAEMMNNG 180
           RQR V EQSFC G                    +FP       SG  D RMDNAEM N  
Sbjct: 121 RQRAVFEQSFCCGEXXXXXXXXXXXXXXXXXXXFFPPPLAEFFSGPWDSRMDNAEMTN-- 180

Query: 181 NCSKTKQLASP----SNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAY 240
           +C K++   +P    SN LS QTIAARERRRKIT KTQELGEL+PGG KMNTAEMLNSA+
Sbjct: 181 DCLKSQPSPAPPAPSSNNLSAQTIAARERRRKITVKTQELGELVPGGSKMNTAEMLNSAF 240

Query: 241 KYVKFLQAQVAI----LQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFV 272
           KYVKFLQAQVAI                     +L+ILES +IQEKLY EE+CLVPKGF+
Sbjct: 241 KYVKFLQAQVAIXXXXXXXXXXXXXXXXXXXXXNLKILESTLIQEKLYLEEKCLVPKGFI 300

[Close]

BLAST of Carg25392 vs. TrEMBL
Match: tr|A0A067GDB5|A0A067GDB5_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041370mg PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.3e-31
Identity = 81/129 (62.79%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 150 ALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAILQLKQ 209
           +LSVQ+IAARERRR+IT KTQELG+LIPGG +MNTAEM  +A KYVKFLQAQV +LQL Q
Sbjct: 177 SLSVQSIAARERRRRITEKTQELGKLIPGGHRMNTAEMFQAASKYVKFLQAQVKVLQLIQ 236

Query: 210 ETEHELEE---QETEDLQ-ILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 269
             + E++E      +DLQ +L S +IQEKLYSE++CLVPK FV+ LAN PEIQS P +  
Sbjct: 237 PKQQEMKEPFHMHAQDLQNLLASPIIQEKLYSEDKCLVPKEFVETLANDPEIQSKPMVFQ 296

Query: 270 SINQILKTS 275
            I+Q+L+T+
Sbjct: 297 GIDQLLRTN 305

[Close]

BLAST of Carg25392 vs. TrEMBL
Match: tr|M5WWF9|M5WWF9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017597mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 78/138 (56.52%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 138 CSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKF 197
           C+K  +    +  LS Q+IAARERRR+IT KTQELG LIPG  KMNTAEML +AYKYVKF
Sbjct: 112 CAKMNKPNGGAVTLSAQSIAARERRRRITEKTQELGRLIPGATKMNTAEMLQAAYKYVKF 171

Query: 198 LQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEI 257
           LQAQV++L+L  ++      QE +DLQ + S ++QEKLY+EE+CLV K FVQ LAN  +I
Sbjct: 172 LQAQVSVLKLMTDSP---VHQEKKDLQAVASPIVQEKLYAEEKCLVSKEFVQVLANDHDI 231

Query: 258 QSHPSISNSINQILKTSG 276
           +S P + +S+ Q+L+T+G
Sbjct: 232 ESKPLLKDSVAQLLQTNG 246

[Close]

BLAST of Carg25392 vs. TrEMBL
Match: tr|A0A251PIA6|A0A251PIA6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G100400 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 78/138 (56.52%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 138 CSKTKQLASPSNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKF 197
           C+K  +    +  LS Q+IAARERRR+IT KTQELG LIPG  KMNTAEML +AYKYVKF
Sbjct: 151 CAKMNKPNGGAVTLSAQSIAARERRRRITEKTQELGRLIPGATKMNTAEMLQAAYKYVKF 210

Query: 198 LQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEI 257
           LQAQV++L+L  ++      QE +DLQ + S ++QEKLY+EE+CLV K FVQ LAN  +I
Sbjct: 211 LQAQVSVLKLMTDSP---VHQEKKDLQAVASPIVQEKLYAEEKCLVSKEFVQVLANDHDI 270

Query: 258 QSHPSISNSINQILKTSG 276
           +S P + +S+ Q+L+T+G
Sbjct: 271 ESKPLLKDSVAQLLQTNG 285

The following BLAST results are available for this feature:

BLAST of Carg25392 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542438.1	2.7e-126	88.77	transcription factor bHLH52-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955064.1	6.0e-126	88.09	transcription factor bHLH52-like [Cucurbita moschata]	[more]
XP_022994858.1	3.1e-122	90.71	uncharacterized protein LOC111490459 [Cucurbita maxima]	[more]
XP_022927111.1	6.5e-80	62.21	transcription factor bHLH52-like [Cucurbita moschata]	[more]
XP_023001636.1	5.3e-74	59.15	transcription factor bHLH52 [Cucurbita maxima]	[more]

BLAST of Carg25392 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34820.1	5.6e-25	54.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G30670.1	1.8e-23	34.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	5.6e-09	54.72	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	1.2e-08	52.83	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.6e-08	50.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Carg25392 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84RD0\|BH053_ARATH	1.0e-23	54.76	Transcription factor bHLH53 OS=Arabidopsis thaliana OX=3702 GN=BHLH53 PE=2 SV=1	[more]
sp\|Q9SA82\|BH052_ARATH	3.2e-22	34.89	Transcription factor bHLH52 OS=Arabidopsis thaliana OX=3702 GN=BHLH52 PE=2 SV=1	[more]
sp\|Q8S3D2\|BH087_ARATH	1.0e-07	54.72	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]
sp\|O81313\|IND_ARATH	2.2e-07	52.83	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
sp\|Q9LXD8\|HEC3_ARATH	6.5e-07	50.00	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]

BLAST of Carg25392 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY56\|A0A0A0LY56_CUCSA	5.5e-67	55.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G542450 PE=4 SV=1	[more]
tr\|A0A1S3BEE9\|A0A1S3BEE9_CUCME	1.1e-54	50.46	transcription factor bHLH52 OS=Cucumis melo OX=3656 GN=LOC103488727 PE=4 SV=1	[more]
tr\|A0A067GDB5\|A0A067GDB5_CITSI	6.3e-31	62.79	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041370mg PE=4 SV=1	[more]
tr\|M5WWF9\|M5WWF9_PRUPE	1.2e-29	56.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa017597mg PE=4 SV=1	[more]
tr\|A0A251PIA6\|A0A251PIA6_PRUPE	1.2e-29	56.52	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G100400 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25392-RA	Carg25392-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 155..204 e-value: 8.1E-9 score: 45.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 157..199 e-value: 7.6E-5 score: 22.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 149..198 score: 11.687
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 155..203 e-value: 3.42725E-7 score: 45.2827
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 154..224 e-value: 9.4E-9 score: 37.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 149..210
None	No IPR available	PANTHER	PTHR16223	FAMILY NOT NAMED	coord: 138..274
None	No IPR available	PANTHER	PTHR16223:SF49	TRANSCRIPTION FACTOR BHLH52-RELATED	coord: 138..274

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25392	Csa1G542450	Cucumber (Chinese Long) v2	carcuB0480
Carg25392	MELO3C002870	Melon (DHL92) v3.5.1	carmeB0454
Carg25392	CSPI01G25300	Wild cucumber (PI 183967)	carcpiB0485
Carg25392	Cucsa.167440	Cucumber (Gy14) v1	carcgyB0517
Carg25392	CmaCh13G004630	Cucurbita maxima (Rimu)	carcmaB0622
Carg25392	CmaCh18G005260	Cucurbita maxima (Rimu)	carcmaB0623
Carg25392	CmoCh13G004970	Cucurbita moschata (Rifu)	carcmoB0605
Carg25392	CmoCh18G005050	Cucurbita moschata (Rifu)	carcmoB0606
Carg25392	Lsi02G009920	Bottle gourd (USVL1VR-Ls)	carlsiB408
Carg25392	Cp4.1LG20g05790	Cucurbita pepo (Zucchini)	carcpeB0630
Carg25392	Cp4.1LG09g07130	Cucurbita pepo (Zucchini)	carcpeB0629
Carg25392	MELO3C002870.2	Melon (DHL92) v3.6.1	carmedB0457
Carg25392	CsaV3_1G037610	Cucumber (Chinese Long) v3	carcucB0482
Carg25392	Bhi08G000815	Wax gourd	carwgoB0541

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25392	Carg21422	Silver-seed gourd	carcarB420

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25392	Cucumber (Gy14) v2	carcgybB0458