CmaCh18G003980 (gene) Cucurbita maxima (Rimu)

NameCmaCh18G003980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSPBc2 prophage-derived uncharacterized yonE
LocationCma_Chr18 : 2187567 .. 2188152 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAACTCCGGCCAAACGACAGCGTACTCCCCGGAGAGGACCAGGCGTGGCGGAGCTCGAGAAGATTCTGAAGGAGCAACAAGCCCAAGACTCCAACACCCAATTCCCACCCATGTCCCCGCCGTCACCGCCGCCACCTCCCCCGCCATCACATCAATTCCTATCTCCATCACCACCGCTACCTCTAACCCCAATTCCATTCCTACCACCGCGTGAGTTCCCTTCTCGGCCAAATCTCTCGCCGTTCACTACTCTCCGTCCCCGACCTCCGCCACCAAAATCCGACACCCAAATGAATATTTCGCCGCAGTTTTTACCCAATTTCCAATTCTCACCTCCCTCACTCAATCGCCATTTTTACAACAACCCAATGGTAAGACAATATTAAACTCCAAACCCTTTTAATTTTTTCTTCAAAAAATTAGTGTAAATATATTAAAAATTTTCAGGAAAATTTCACTCCTGCCTCCGCCTCATCCTCATCGTGTCCGCCGGCAATGCCACCGCCGCCTAATTGCTTCAATCAAATAGACCTCCGCCTCATCCTCATCGTGTCCGCCGGCAATGCCACCGCCGCCTAA

mRNA sequence

ATGAAGAAAACTCCGGCCAAACGACAGCGTACTCCCCGGAGAGGACCAGGCGTGGCGGAGCTCGAGAAGATTCTGAAGGAGCAACAAGCCCAAGACTCCAACACCCAATTCCCACCCATGTCCCCGCCGTCACCGCCGCCACCTCCCCCGCCATCACATCAATTCCTATCTCCATCACCACCGCTACCTCTAACCCCAATTCCATTCCTACCACCGCGTGAGTTCCCTTCTCGGCCAAATCTCTCGCCGTTCACTACTCTCCGTCCCCGACCTCCGCCACCAAAATCCGACACCCAAATGAATATTTCGCCGCAGTTTTTACCCAATTTCCAATTCTCACCTCCCTCACTCAATCGCCATTTTTACAACAACCCAATGGAAAATTTCACTCCTGCCTCCGCCTCATCCTCATCGTGTCCGCCGGCAATGCCACCGCCGCCTAATTGCTTCAATCAAATAGACCTCCGCCTCATCCTCATCGTGTCCGCCGGCAATGCCACCGCCGCCTAA

Coding sequence (CDS)

ATGAAGAAAACTCCGGCCAAACGACAGCGTACTCCCCGGAGAGGACCAGGCGTGGCGGAGCTCGAGAAGATTCTGAAGGAGCAACAAGCCCAAGACTCCAACACCCAATTCCCACCCATGTCCCCGCCGTCACCGCCGCCACCTCCCCCGCCATCACATCAATTCCTATCTCCATCACCACCGCTACCTCTAACCCCAATTCCATTCCTACCACCGCGTGAGTTCCCTTCTCGGCCAAATCTCTCGCCGTTCACTACTCTCCGTCCCCGACCTCCGCCACCAAAATCCGACACCCAAATGAATATTTCGCCGCAGTTTTTACCCAATTTCCAATTCTCACCTCCCTCACTCAATCGCCATTTTTACAACAACCCAATGGAAAATTTCACTCCTGCCTCCGCCTCATCCTCATCGTGTCCGCCGGCAATGCCACCGCCGCCTAATTGCTTCAATCAAATAGACCTCCGCCTCATCCTCATCGTGTCCGCCGGCAATGCCACCGCCGCCTAA

Protein sequence

MKKTPAKRQRTPRRGPGVAELEKILKEQQAQDSNTQFPPMSPPSPPPPPPPSHQFLSPSPPLPLTPIPFLPPREFPSRPNLSPFTTLRPRPPPPKSDTQMNISPQFLPNFQFSPPSLNRHFYNNPMENFTPASASSSSCPPAMPPPPNCFNQIDLRLILIVSAGNATAA
BLAST of CmaCh18G003980 vs. TrEMBL
Match: A0A0A0LSF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077140 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-14
Identity = 74/172 (43.02%), Postives = 90/172 (52.33%), Query Frame = 1

Query: 1   MKKTPAKRQRTPRRGPGVAELEKILKEQQAQDSNTQFPPMSP------------------ 60
           M+KT AKRQR PRRGPGVAELEKILKEQ++  +       SP                  
Sbjct: 1   MRKTQAKRQRIPRRGPGVAELEKILKEQESGAATDHQHTSSPHTNSTSTAATTTTHPLSL 60

Query: 61  ----PSPPPPPPPSHQFLSPS-PPLP------LTPIPFLPPREFPSRPNLSPFTTLRPRP 120
               P PPPPPPP  Q ++PS PPLP         +P  P  EF   P L    T +P  
Sbjct: 61  NPPRPPPPPPPPPLVQIMTPSPPPLPRDYVAWSNNLPLFPTLEFIPPPYLPTVVTEKPLF 120

Query: 121 PPPK-SDTQMNISPQFLPNFQFSPPSLNRHFYNNPMENFTPASASSSSCPPA 143
           P  + S++Q+N++P FLP+FQ+S  S N   Y NPM N      S SSCP A
Sbjct: 121 PTTRMSESQLNLAPYFLPSFQYSASSFNPDQYYNPMVNVN--QGSGSSCPSA 170

BLAST of CmaCh18G003980 vs. NCBI nr
Match: gi|778664946|ref|XP_011648446.1| (PREDICTED: CREB-regulated transcription coactivator 1-like [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 74/172 (43.02%), Postives = 90/172 (52.33%), Query Frame = 1

Query: 1   MKKTPAKRQRTPRRGPGVAELEKILKEQQAQDSNTQFPPMSP------------------ 60
           M+KT AKRQR PRRGPGVAELEKILKEQ++  +       SP                  
Sbjct: 1   MRKTQAKRQRIPRRGPGVAELEKILKEQESGAATDHQHTSSPHTNSTSTAATTTTHPLSL 60

Query: 61  ----PSPPPPPPPSHQFLSPS-PPLP------LTPIPFLPPREFPSRPNLSPFTTLRPRP 120
               P PPPPPPP  Q ++PS PPLP         +P  P  EF   P L    T +P  
Sbjct: 61  NPPRPPPPPPPPPLVQIMTPSPPPLPRDYVAWSNNLPLFPTLEFIPPPYLPTVVTEKPLF 120

Query: 121 PPPK-SDTQMNISPQFLPNFQFSPPSLNRHFYNNPMENFTPASASSSSCPPA 143
           P  + S++Q+N++P FLP+FQ+S  S N   Y NPM N      S SSCP A
Sbjct: 121 PTTRMSESQLNLAPYFLPSFQYSASSFNPDQYYNPMVNVN--QGSGSSCPSA 170

BLAST of CmaCh18G003980 vs. NCBI nr
Match: gi|700209617|gb|KGN64713.1| (hypothetical protein Csa_1G077140 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 74/172 (43.02%), Postives = 90/172 (52.33%), Query Frame = 1

Query: 1   MKKTPAKRQRTPRRGPGVAELEKILKEQQAQDSNTQFPPMSP------------------ 60
           M+KT AKRQR PRRGPGVAELEKILKEQ++  +       SP                  
Sbjct: 1   MRKTQAKRQRIPRRGPGVAELEKILKEQESGAATDHQHTSSPHTNSTSTAATTTTHPLSL 60

Query: 61  ----PSPPPPPPPSHQFLSPS-PPLP------LTPIPFLPPREFPSRPNLSPFTTLRPRP 120
               P PPPPPPP  Q ++PS PPLP         +P  P  EF   P L    T +P  
Sbjct: 61  NPPRPPPPPPPPPLVQIMTPSPPPLPRDYVAWSNNLPLFPTLEFIPPPYLPTVVTEKPLF 120

Query: 121 PPPK-SDTQMNISPQFLPNFQFSPPSLNRHFYNNPMENFTPASASSSSCPPA 143
           P  + S++Q+N++P FLP+FQ+S  S N   Y NPM N      S SSCP A
Sbjct: 121 PTTRMSESQLNLAPYFLPSFQYSASSFNPDQYYNPMVNVN--QGSGSSCPSA 170

BLAST of CmaCh18G003980 vs. NCBI nr
Match: gi|659068150|ref|XP_008443003.1| (PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 77/177 (43.50%), Postives = 91/177 (51.41%), Query Frame = 1

Query: 1   MKKTPAKRQRTPRRGPGVAELEKILKEQQAQDSNT--QFPP--------------MSPPS 60
           M+KT AKRQR PRRGPGVAELEKILKEQ++  ++T     P              ++PP 
Sbjct: 1   MRKTQAKRQRIPRRGPGVAELEKILKEQESGGASTDQHISPHTNSTSTATTHPLSLNPPL 60

Query: 61  PPPPPPPSHQFLSPSPPLP--LTPIPFLPPREFPSRPNLSP-FTTLRPRPPP-------- 120
           PPPPPPP        PPL   +TP P  PPR++ S  N  P F TL   PPP        
Sbjct: 61  PPPPPPP--------PPLVQIMTPSPTPPPRDYVSWTNNLPLFPTLEFIPPPYLPTVAAE 120

Query: 121 --------PKSDTQMNISPQFLPNFQFSPPSLNRHFYNNPMENFTPASASSSSCPPA 143
                       +Q+N++P FLP FQFS  S N   Y NPM N      S SSCP A
Sbjct: 121 KPLFPTTRISEASQLNLAPYFLPTFQFSASSCNPDQYYNPMVNIN--QGSGSSCPSA 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LSF6_CUCSA2.3e-1443.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G077140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778664946|ref|XP_011648446.1|3.3e-1443.02PREDICTED: CREB-regulated transcription coactivator 1-like [Cucumis sativus][more]
gi|700209617|gb|KGN64713.1|3.3e-1443.02hypothetical protein Csa_1G077140 [Cucumis sativus][more]
gi|659068150|ref|XP_008443003.1|2.2e-1343.50PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G003980.1CmaCh18G003980.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G003980CmoCh18G003820Cucurbita moschata (Rifu)cmacmoB407
CmaCh18G003980CsaV3_1G012670Cucumber (Chinese Long) v3cmacucB0465
CmaCh18G003980Carg14597Silver-seed gourdcarcmaB0198
The following gene(s) are paralogous to this gene:

None