CmaCh17G012670 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G012670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Disease resistance protein (TIR-NBS-LRR class)
Location	Cma_Chr17 : 8611472 .. 8611684 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTGGTTGTGATCTCAGAACACTACGCTTCCTCGTGGTGGTGCCTTGCGGAGTTGGTTAAGATACTCGAGTATAGAGAGCATACGGGAATGAAGACTATGCCGATCTTTTACAAAGTGGATCCTTCTGATGTTAATGAAGCTAGATTTGGAGAAGATGACTTGAAGGTTCTTCAATGGAGGAAGGCTCTGTTTGAGATCGCCGGCTAA

mRNA sequence

ATGGCCGTGGTTGTGATCTCAGAACACTACGCTTCCTCGTGGTGGTGCCTTGCGGAGTTGGTTAAGATACTCGAGTATAGAGAGCATACGGGAATGAAGACTATGCCGATCTTTTACAAAGTGGATCCTTCTGATGTTAATGAAGCTAGATTTGGAGAAGATGACTTGAAGGTTCTTCAATGGAGGAAGGCTCTGTTTGAGATCGCCGGCTAA

Coding sequence (CDS)

ATGGCCGTGGTTGTGATCTCAGAACACTACGCTTCCTCGTGGTGGTGCCTTGCGGAGTTGGTTAAGATACTCGAGTATAGAGAGCATACGGGAATGAAGACTATGCCGATCTTTTACAAAGTGGATCCTTCTGATGTTAATGAAGCTAGATTTGGAGAAGATGACTTGAAGGTTCTTCAATGGAGGAAGGCTCTGTTTGAGATCGCCGGCTAA

Protein sequence

MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEARFGEDDLKVLQWRKALFEIAG

Homology

[Close]

BLAST of CmaCh17G012670 vs. Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.4e-12
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNE--ARFGEDDLKV 60
           ++VV+ SE+YASS WCL EL++I++ +E  G+K MP+FYKVDPSD+ +   +FG   L+ 
Sbjct: 66  ISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLET 125

Query: 61  L---------QWRKALFEIA 70
                      WR+AL + A
Sbjct: 126 CCGKTEERQHNWRRALTDAA 145

[Close]

BLAST of CmaCh17G012670 vs. Swiss-Prot
Match: TIR_ARATH (Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-09
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 2   AVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-----------NEAR 61
           AVVV+SE+YA+S WCL ELV I+++ +   +  MPIFY V+P+ V            +  
Sbjct: 66  AVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125

Query: 62  FGEDDLKVLQWRKALFEIA 70
             ED  KVL+WR+AL   A
Sbjct: 126 SREDPEKVLKWRQALTNFA 144

[Close]

BLAST of CmaCh17G012670 vs. Swiss-Prot
Match: RPP1_ARATH (Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-09
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNE--ARFGEDDLK- 60
           +A+V++S  YASS WCL EL +I++ R+  G   M IFY+VDP+D+ +    FG+   K 
Sbjct: 153 IAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDPTDIKKQTGEFGKAFTKT 212

Query: 61  --------VLQWRKALFEIA 70
                   V +WRKAL ++A
Sbjct: 213 CRGKPKEQVERWRKALEDVA 232

[Close]

BLAST of CmaCh17G012670 vs. Swiss-Prot
Match: TAO1_ARATH (Disease resistance protein TAO1 OS=Arabidopsis thaliana GN=TAO1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-09
Identity = 30/80 (37.50%), Postives = 46/80 (57.50%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR---------- 60
           +A++++S +Y SS WCL ELV+I++ RE  G   M +FY VDPSDV + +          
Sbjct: 95  IAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQKGDFGKVFKKT 154

Query: 61  -FGEDDLKVLQWRKALFEIA 70
             G  +  V +W++AL   A
Sbjct: 155 CVGRPEEMVQRWKQALTSAA 174

[Close]

BLAST of CmaCh17G012670 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.7e-09
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1


Query: 2   AVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------NE 61
           A+VV SE+YA+S WCL ELVKI+E +       +PIFY VDPS V             +E
Sbjct: 69  AIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHE 128

Query: 62  ARFGEDDLKVLQWRKALFEIA 70
            ++ +D   + +WR AL E A
Sbjct: 129 TKYKDDVEGIQRWRIALNEAA 149

[Close]

BLAST of CmaCh17G012670 vs. TrEMBL
Match: M5X9W2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016235mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.9e-13
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------N 60
           ++V+V SE+YASS WCL ELVKILEY++      MPIFYKVDPSDV             +
Sbjct: 88  ISVIVFSENYASSSWCLDELVKILEYKKSKQQLVMPIFYKVDPSDVRNQRSSFGDALVDH 147

Query: 61  EARFGEDDLKVLQWRKALFEIA 70
           E +F +D  KVL+WR+AL E A
Sbjct: 148 EHKFKDDMEKVLEWRRALTEAA 169

[Close]

BLAST of CmaCh17G012670 vs. TrEMBL
Match: A0A059C7X8_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E03285 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-12
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR---------- 60
           +A++V SE+YASS WCL EL+KI+E +E  G+K  P+FYKV+P +V E R          
Sbjct: 61  VAIIVFSENYASSRWCLEELLKIMECKEQNGLKVFPVFYKVEPREVREGRESYKRAMDNH 120

Query: 61  ---FGEDDLKVLQWRKALFE 68
              FG+D  KV +W+KAL E
Sbjct: 121 ESKFGKDSEKVKRWKKALSE 140

[Close]

BLAST of CmaCh17G012670 vs. TrEMBL
Match: A0A059C9G9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03292 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-12
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------N 60
           +A+++ SE YASS WCL ELVKI+E +E  G+K +P+FYKV+P +V             +
Sbjct: 66  VAIIIFSEEYASSPWCLEELVKIMECKEQKGLKVLPVFYKVEPREVKVGRKSYGRNMAKH 125

Query: 61  EARFGEDDLKVLQWRKALFE 68
           E +FG+D  KV +W+K LF+
Sbjct: 126 ELKFGKDSEKVKRWKKTLFD 145

[Close]

BLAST of CmaCh17G012670 vs. TrEMBL
Match: A0A059C6M1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02138 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR---------- 60
           +A+++ SE YASSWWCL E+ KI+E RE   +  +P+FYKVDP +V E R          
Sbjct: 67  IAIIIFSEDYASSWWCLEEMAKIMECREQKDLTVLPVFYKVDPREVREGRESYRKALDKH 126

Query: 61  ---FGEDDLKVLQWRKALFE 68
              F +D  KV +W+KALF+
Sbjct: 127 EDKFRKDPEKVKKWKKALFD 146

[Close]

BLAST of CmaCh17G012670 vs. TrEMBL
Match: A0A059C6X5_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E025712 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-12
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEARFGEDDLKVLQ 60
           +A+++ SE YASSWWCL E+ KI+E +E   +  +P+FYKV+  D +E +F +D  KV +
Sbjct: 48  IAIIIFSEDYASSWWCLEEMAKIMECKEQKDLIVLPVFYKVEALDKHEDKFRKDPEKVKK 107

Query: 61  WRKALFE 68
           W+KALF+
Sbjct: 108 WKKALFD 114

[Close]

BLAST of CmaCh17G012670 vs. TAIR10
Match: AT4G11170.1 (AT4G11170.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 70.5 bits (171), Expect = 4.7e-13
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNE--ARFGEDDLKV 60
           ++VV+ SE+YASS WCL EL++I++ +E  G+K MP+FYKVDPSD+ +   +FG   L+ 
Sbjct: 66  ISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLET 125

Query: 61  L---------QWRKALFEIA 70
                      WR+AL + A
Sbjct: 126 CCGKTEERQHNWRRALTDAA 145

[Close]

BLAST of CmaCh17G012670 vs. TAIR10
Match: AT1G72950.1 (AT1G72950.1 Disease resistance protein (TIR-NBS class))

HSP 1 Score: 66.6 bits (161), Expect = 6.8e-12
Identity = 38/81 (46.91%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 2   AVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------NE 61
           AVVV+S +YA+S WCL ELVKI+++     +K MPIFY VDP  V             +E
Sbjct: 68  AVVVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDPCHVRRQIGEVAEQFKKHE 127

Query: 62  ARFGEDDLKVLQWRKALFEIA 70
            R  ED  KVL WR+AL  +A
Sbjct: 128 GR--EDHEKVLSWRQALTNLA 146

[Close]

BLAST of CmaCh17G012670 vs. TAIR10
Match: AT5G40910.1 (AT5G40910.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 66.2 bits (160), Expect = 8.9e-12
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR--FGEDDLKV 60
           +++VV+SE YASS WCL ELV+IL+ +E +G   M IFYKVDPSDV + R  FG    K 
Sbjct: 67  VSIVVLSEKYASSCWCLDELVEILKCKEASGQVVMTIFYKVDPSDVRKQRGDFGSTFKKT 126

Query: 61  LQ---------WRKALFEIA 70
            +         W KAL  IA
Sbjct: 127 CEGKTWIVKQRWIKALEYIA 146

[Close]

BLAST of CmaCh17G012670 vs. TAIR10
Match: AT5G17680.1 (AT5G17680.1 disease resistance protein (TIR-NBS-LRR class), putative)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-11
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 1


Query: 2   AVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR--FGE------ 61
           A+VV+S +YA+S WCL EL+KI+E  + T    +PIFY+VDPSDV   R  FGE      
Sbjct: 75  AIVVVSRNYAASSWCLDELLKIMECNKDT---IVPIFYEVDPSDVRRQRGSFGEDVESHS 134

Query: 62  DDLKVLQWRKALFEIA 70
           D  KV +W++AL ++A
Sbjct: 135 DKEKVGKWKEALKKLA 147

[Close]

BLAST of CmaCh17G012670 vs. TAIR10
Match: AT1G72930.1 (AT1G72930.1 toll/interleukin-1 receptor-like)

HSP 1 Score: 62.8 bits (151), Expect = 9.9e-11
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 2   AVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-----------NEAR 61
           AVVV+SE+YA+S WCL ELV I+++ +   +  MPIFY V+P+ V            +  
Sbjct: 66  AVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHA 125

Query: 62  FGEDDLKVLQWRKALFEIA 70
             ED  KVL+WR+AL   A
Sbjct: 126 SREDPEKVLKWRQALTNFA 144

[Close]

BLAST of CmaCh17G012670 vs. NCBI nr
Match: gi|659119242|ref|XP_008459550.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-14
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 1


Query: 2   AVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------NE 61
           A+VV+SE+YASS WCL ELVKI E  E  GM  +PIFYKVDPS V             +E
Sbjct: 75  AIVVVSENYASSRWCLEELVKIFECEEKLGMDVLPIFYKVDPSHVRNQRGRFEEAFVKHE 134

Query: 62  ARFGEDDLKVLQWRKALFEIA 70
            RFG DD+KV +WR+ L ++A
Sbjct: 135 MRFGRDDIKVQKWRRLLTKLA 155

[Close]

BLAST of CmaCh17G012670 vs. NCBI nr
Match: gi|702357792|ref|XP_010059170.1| (PREDICTED: TMV resistance protein N-like [Eucalyptus grandis])

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR---------- 60
           +A++V SE+YASS WCL EL+KI+E +E  G+K  P+FYKV+P +V E R          
Sbjct: 61  VAIIVFSENYASSRWCLEELLKIMECKEKNGLKLFPVFYKVEPREVREGRESYKRAMDNH 120

Query: 61  ---FGEDDLKVLQWRKALFE 68
              FG+D  KV +W+KALFE
Sbjct: 121 ESKFGKDSEKVKRWKKALFE 140

[Close]

BLAST of CmaCh17G012670 vs. NCBI nr
Match: gi|645252383|ref|XP_008232097.1| (PREDICTED: TMV resistance protein N-like [Prunus mume])

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-13
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------N 60
           ++V+V SE+YASS WCL ELVKILEY++      MPIFYKVDPSDV             +
Sbjct: 81  ISVIVFSENYASSSWCLDELVKILEYKKSKQQLVMPIFYKVDPSDVRNQRSSFGDALADH 140

Query: 61  EARFGEDDLKVLQWRKALFEIA 70
           E +F +D  KVL+WR+AL E A
Sbjct: 141 ERKFKDDMEKVLEWRRALTEAA 162

[Close]

BLAST of CmaCh17G012670 vs. NCBI nr
Match: gi|596059824|ref|XP_007221062.1| (hypothetical protein PRUPE_ppa016235mg [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 9.9e-13
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 1   MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDV-------------N 60
           ++V+V SE+YASS WCL ELVKILEY++      MPIFYKVDPSDV             +
Sbjct: 88  ISVIVFSENYASSSWCLDELVKILEYKKSKQQLVMPIFYKVDPSDVRNQRSSFGDALVDH 147

Query: 61  EARFGEDDLKVLQWRKALFEIA 70
           E +F +D  KVL+WR+AL E A
Sbjct: 148 EHKFKDDMEKVLEWRRALTEAA 169

[Close]

BLAST of CmaCh17G012670 vs. NCBI nr
Match: gi|702347495|ref|XP_010057289.1| (PREDICTED: TMV resistance protein N-like [Eucalyptus grandis])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1


Query: 1  MAVVVISEHYASSWWCLAELVKILEYREHTGMKTMPIFYKVDPSDVNEAR---------- 60
          +A++V SEHYASS WCL EL+KI+E +E  G+K  P+FYKV+P +V E R          
Sbjct: 9  VAIIVFSEHYASSRWCLEELLKIMECKEKNGLKVFPVFYKVEPREVREGRESYKRAMDNH 68

Query: 61 ---FGEDDLKVLQWRKALFE 68
             FG+D  +V +W+KAL E
Sbjct: 69 ESKFGKDSEEVKRWKKALSE 88

The following BLAST results are available for this feature:

BLAST of CmaCh17G012670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y4117_ARATH	8.4e-12	43.75	Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g111...	[more]
TIR_ARATH	1.8e-09	43.04	Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=...	[more]
RPP1_ARATH	5.1e-09	41.25	Probable disease resistance protein RPP1 OS=Arabidopsis thaliana GN=RPP1 PE=2 SV...	[more]
TAO1_ARATH	6.7e-09	37.50	Disease resistance protein TAO1 OS=Arabidopsis thaliana GN=TAO1 PE=3 SV=1	[more]
TMVRN_NICGU	6.7e-09	41.98	TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	[more]

BLAST of CmaCh17G012670 vs. TrEMBL


Match Name	E-value	Identity	Description
M5X9W2_PRUPE	6.9e-13	52.44	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016235mg PE=4 SV=1	[more]
A0A059C7X8_EUCGR	2.0e-12	47.50	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E03285 PE=4 ...	[more]
A0A059C9G9_EUCGR	2.6e-12	45.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03292 PE=4 SV=1	[more]
A0A059C6M1_EUCGR	2.6e-12	45.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02138 PE=4 SV=1	[more]
A0A059C6X5_EUCGR	2.6e-12	47.76	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E025712 PE=4...	[more]

BLAST of CmaCh17G012670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G11170.1	4.7e-13	43.75	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT1G72950.1	6.8e-12	46.91	Disease resistance protein (TIR-NBS class)	[more]
AT5G40910.1	8.9e-12	48.75	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT5G17680.1	3.4e-11	48.68	disease resistance protein (TIR-NBS-LRR class), putative	[more]
AT1G72930.1	9.9e-11	43.04	toll/interleukin-1 receptor-like	[more]

BLAST of CmaCh17G012670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119242\|ref\|XP_008459550.1\|	6.9e-14	53.09	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|702357792\|ref\|XP_010059170.1\|	5.8e-13	48.75	PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]	[more]
gi\|645252383\|ref\|XP_008232097.1\|	7.6e-13	52.44	PREDICTED: TMV resistance protein N-like [Prunus mume]	[more]
gi\|596059824\|ref\|XP_007221062.1\|	9.9e-13	52.44	hypothetical protein PRUPE_ppa016235mg [Prunus persica]	[more]
gi\|702347495\|ref\|XP_010057289.1\|	1.7e-12	47.50	PREDICTED: TMV resistance protein N-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000157	TIR_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012670.1	CmaCh17G012670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	GENE3D	G3DSA:3.40.50.10140		coord: 2..62 score: 2.
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PFAM	PF01582	TIR	coord: 2..65 score: 1.0
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	PROFILE	PS50104	TIR	coord: 1..70 score: 11
IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	unknown	SSF52200	Toll/Interleukin receptor TIR domain	coord: 2..68 score: 3.53
None	No IPR available	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 2..69 score: 5.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G012670	Watermelon (97103) v2	cmawmbB390
CmaCh17G012670	Wax gourd	cmawgoB0493
CmaCh17G012670	Cucurbita maxima (Rimu)	cmacmaB374
CmaCh17G012670	Cucumber (Gy14) v1	cgycmaB0137
CmaCh17G012670	Cucumber (Gy14) v1	cgycmaB0138
CmaCh17G012670	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G012670	Cucurbita moschata (Rifu)	cmacmoB366
CmaCh17G012670	Wild cucumber (PI 183967)	cmacpiB388
CmaCh17G012670	Cucumber (Chinese Long) v2	cmacuB384
CmaCh17G012670	Melon (DHL92) v3.5.1	cmameB321
CmaCh17G012670	Watermelon (Charleston Gray)	cmawcgB309
CmaCh17G012670	Watermelon (97103) v1	cmawmB331
CmaCh17G012670	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G012670	Cucurbita pepo (Zucchini)	cmacpeB379
CmaCh17G012670	Bottle gourd (USVL1VR-Ls)	cmalsiB346
CmaCh17G012670	Cucumber (Gy14) v2	cgybcmaB920
CmaCh17G012670	Melon (DHL92) v3.6.1	cmamedB374
CmaCh17G012670	Silver-seed gourd	carcmaB0104
CmaCh17G012670	Silver-seed gourd	carcmaB0591
CmaCh17G012670	Cucumber (Chinese Long) v3	cmacucB0457