CmaCh17G009130 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G009130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionProtein binding / zinc ion binding protein
LocationCma_Chr17 : 6876234 .. 6879363 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGATGGACTCGATGGAAAAGGATAATCTGAACCTACGAAATAAGCTGTCTGGTTTTATTTCTGACGATGAAAATGAAGAATCGAGATGCCTTGGTACAATCAGAAGTGATGCTAACTTCAATGGGCTCCATGAAGAATACAGTGCAGCTTCTGGACTCCATCATTCCCAATTTCCAGATCCATCTGTCTCCTCTCATCCAAACCTTGCTGGATCCTTCTCTGATTCAATTTCATACACTGATATTGATTGGTCATTTGATGGCTCCCGGTTGGGATTAAGCTCTCAAAAGTGGTCTAACAGCATTTATGCGAATCCCAAAAATAAGACAAATGCTTCTTTCCGTATCAGAAGTCCAGAACTTGCCAGTATTTGTAGAGTCCCAGCAAGAAGTCACGAAGCTGAAGGCATACATAGAGTAACAAACAATCATAATTTTCACTCCGCGGAATGTGAGGACCAAATCGATCTTAACATTACTGCAATTTGCAGTGCACTCCAACCTCATGGTTTAGAAGAACTAGATGCTGAGGCTTTAGATGTCGGATGTCAGACAAAAGCCACTACGGCTCTTAACAAGGCAGATAAGATCTCAGGCTTTAAAGACAATTCAGGGGATATTCCTAACCTTACAACCTTTCCTCAGAACTCTGTAGGATTAAGATGTAGTAATTTTATTAATTTTAGTTTGCACCAATCATCTGTCTTCCAACCATCTATTATAGTTGGTGGGGATAACCCTTTTCCCACGCCAAGCTTTACAGATGATTCGGGTCTTACTCCTGCAGTAGTACAGGGCGATGAGGATATCCTCAACTCACTTAAAAATGCTCCTCCACTTACGACAGAATCTGTTAACAGCAAAATTGAGCTATCCTCACAATGCTGGTTTACTGACTTAGAATCTTGTTTGCTTAGAAGGGATCAAAGTCAGCGGCCGTCTGAACAGAAATCTCATCCTGATGTTAGGAACTTCACATCTGAATTTCCAACATTTGCTCCTTCCCTTGGGATCTCTGCAACCATCTCTGTTCCAGATCAGTCAGGTAAGAGAGATAGATACTTCAGTGGTAGTTTCATTTTGTTTAACATTGAATGCTATTTAAGATCGTTCTTGAACAATTTTAGCATAAATGATAATCAATTTTGACGTCGAACATGTTTTTTTATTGCTTGCAGTTGAGCTTGTTCAATCTGCTGGCCCGTCTCAACCTCCCCAAAACGTTGGCAATGCTCTCGCTTCTGGTACCACTTTTATTGTCTTTATTATGATCTCGTCTTCAATTAACAGTTTCATTAAGTAATTATATGGAAGGAGGAATAACTTTAAGCTCGATATGTTTCAGGAAATCAAGATGCAAGAGAATTTGGGACAGTTGAAGATTCTGGTATTGCTAAATCAAATCCTCATCCACCAGTGTTCACTTCTTCCCCTGTCTCGGCAAATACTGACATATCATTTCAAGCCCATCTTGCGCAGGTTCTATCTGTCTCTGTCTCACCTGATATAACTTCACATGTTGTAATTCAACCTCAGAAAACCGAAATTGACCCAAATCAGGTTTACCAACCAATCATTAGTGAGAGCGTTCCACTTGTTTCTTCCAAGTTTGAAGATCTACGAGATCGTTCTTTCCGACGCTCAAGGACCTCACGTTGTTACATAAAATGCCGAGGTACTTCCGTATTATATATTTAAACGTATTATTGTTTCTCATATTTGTTCATTTGCTTGAAAATATTATAGATGTTATTTTTTCATACTTACGTGCGGTAGCTTAAGAACAAGCACTTGAAATTAAAAAGTCGAAAGTCTTAAGATTTTGGTCTGCTTGGTGATTTATGAATTTATTGGTGATTTAATACTATCTGGCTGTAGTTTATTTTATTTTATTCAAAAAAATTTATTTATGTTGGCGGTATGAGTACTAAATTTGTCGTTTTGGGCAGAAAGACTACAAATTAGCAGAATAGAAGCTGTAATTTCAATAGAGTATCTGCATAGGTGTCACATACAGACATGAAATCAAATACACGTTGAACAAATAATTTAGTGGGTCTTATCGTTTCATATAGTTGTCATTTTTAAGTTTTGAACACTTGCATGGCTTCGTTCAGACACACCCGGACATGTATTAGAAAACAACCGACAAAATAGTAGAAAAGCCACACTGAACCATTCTACTAGCGCATTAGAAACTAATCAGAACTGAGAGATGCACAATTAAACAACAAAGGCAAATCAATATCAAATTAAGAAAGGACATATGAAACAAAACTAAGAAACCATGAACAATTGGGTTTCTTAAAGAGAACCCACAGAATCAATGAAGGCAAATTATAGTTGGACCACTGATCTGGGCTGAAAAAATGGGTGCAGCCAGGATGCATCGTATTTTTCTTTTTTATTCTTCTATTTAGCTTTGTGAGTTTAATTCTTAACTTTACCAGTGAATTACACAAATTTCAACCAATATGATACAAAATTGAAGTATAAAAATGCTCAAACCAACCACGAAAATACTTTCAAAAAAAATATATTATTATTATTATGATCTTTGTAGCATGTATAGGAATACTTTTGACAGAAGCAAAAGGCTTATATGAACCTTTACTGGGTAAGTATGGAGATCTATACACATATATTATCAAGTGGTGATACTCAATTTCGTTTGCAGATTTGGATCAAACTCCCAAATTAAGTGGCGAGAGATGCTTCATATGTAAGAGGGATCTTTCATTCAAACCAGAAGGCTCACTTGTCCTTCCAAAAATTCCACCAACTGTGGCAATACTGCCATGTAGCCACGTGTTTCATGGCCTCTGTTTGGAACGCGTCACTCCTCAAAACCAAGCTGAAGATCCTCCCTGTCTTCCTTGTGCTGTTGGCGACACTTGATTTCTGCAAACCATTGGGGTTAGTCACTCATCACCTCTCATTTATTTTTCTCAGATTGAAATTCTTTAACAAGAATAACTTGAGATGGGTTTAACTTTGTATATACGTAGGCTAATTACCACTTAATTTTTTGCTCTCAACTGCACTAATTTTTCCCCCGGGTAAGAACTTCCTTTCATAGCCAATTCTCCAAGTACTCGGATGTATTCGAATTTTCTCACTTTATGTTCG

mRNA sequence

CAGGATGGACTCGATGGAAAAGGATAATCTGAACCTACGAAATAAGCTGTCTGGTTTTATTTCTGACGATGAAAATGAAGAATCGAGATGCCTTGGTACAATCAGAAGTGATGCTAACTTCAATGGGCTCCATGAAGAATACAGTGCAGCTTCTGGACTCCATCATTCCCAATTTCCAGATCCATCTGTCTCCTCTCATCCAAACCTTGCTGGATCCTTCTCTGATTCAATTTCATACACTGATATTGATTGGTCATTTGATGGCTCCCGGTTGGGATTAAGCTCTCAAAAGTGGTCTAACAGCATTTATGCGAATCCCAAAAATAAGACAAATGCTTCTTTCCGTATCAGAAGTCCAGAACTTGCCAGTATTTGTAGAGTCCCAGCAAGAAGTCACGAAGCTGAAGGCATACATAGAGTAACAAACAATCATAATTTTCACTCCGCGGAATGTGAGGACCAAATCGATCTTAACATTACTGCAATTTGCAGTGCACTCCAACCTCATGGTTTAGAAGAACTAGATGCTGAGGCTTTAGATGTCGGATGTCAGACAAAAGCCACTACGGCTCTTAACAAGGCAGATAAGATCTCAGGCTTTAAAGACAATTCAGGGGATATTCCTAACCTTACAACCTTTCCTCAGAACTCTGTAGGATTAAGATGTAGTAATTTTATTAATTTTAGTTTGCACCAATCATCTGTCTTCCAACCATCTATTATAGTTGGTGGGGATAACCCTTTTCCCACGCCAAGCTTTACAGATGATTCGGGTCTTACTCCTGCAGTAGTACAGGGCGATGAGGATATCCTCAACTCACTTAAAAATGCTCCTCCACTTACGACAGAATCTGTTAACAGCAAAATTGAGCTATCCTCACAATGCTGGTTTACTGACTTAGAATCTTGTTTGCTTAGAAGGGATCAAAGTCAGCGGCCGTCTGAACAGAAATCTCATCCTGATGTTAGGAACTTCACATCTGAATTTCCAACATTTGCTCCTTCCCTTGGGATCTCTGCAACCATCTCTGTTCCAGATCAGTCAGTTGAGCTTGTTCAATCTGCTGGCCCGTCTCAACCTCCCCAAAACGTTGGCAATGCTCTCGCTTCTGGAAATCAAGATGCAAGAGAATTTGGGACAGTTGAAGATTCTGGTATTGCTAAATCAAATCCTCATCCACCAGTGTTCACTTCTTCCCCTGTCTCGGCAAATACTGACATATCATTTCAAGCCCATCTTGCGCAGGTTTACCAACCAATCATTAGTGAGAGCGTTCCACTTGTTTCTTCCAAGTTTGAAGATCTACGAGATCGTTCTTTCCGACGCTCAAGGACCTCACGTTGTTACATAAAATGCCGAGATTTGGATCAAACTCCCAAATTAAGTGGCGAGAGATGCTTCATATGTAAGAGGGATCTTTCATTCAAACCAGAAGGCTCACTTGTCCTTCCAAAAATTCCACCAACTGTGGCAATACTGCCATGTAGCCACGTGTTTCATGGCCTCTGTTTGGAACGCGTCACTCCTCAAAACCAAGCTGAAGATCCTCCCTGTCTTCCTTGTGCTGTTGGCGACACTTGATTTCTGCAAACCATTGGGGTTAGTCACTCATCACCTCTCATTTATTTTTCTCAGATTGAAATTCTTTAACAAGAATAACTTGAGATGGGTTTAACTTTGTATATACGTAGGCTAATTACCACTTAATTTTTTGCTCTCAACTGCACTAATTTTTCCCCCGGGTAAGAACTTCCTTTCATAGCCAATTCTCCAAGTACTCGGATGTATTCGAATTTTCTCACTTTATGTTCG

Coding sequence (CDS)

ATGGACTCGATGGAAAAGGATAATCTGAACCTACGAAATAAGCTGTCTGGTTTTATTTCTGACGATGAAAATGAAGAATCGAGATGCCTTGGTACAATCAGAAGTGATGCTAACTTCAATGGGCTCCATGAAGAATACAGTGCAGCTTCTGGACTCCATCATTCCCAATTTCCAGATCCATCTGTCTCCTCTCATCCAAACCTTGCTGGATCCTTCTCTGATTCAATTTCATACACTGATATTGATTGGTCATTTGATGGCTCCCGGTTGGGATTAAGCTCTCAAAAGTGGTCTAACAGCATTTATGCGAATCCCAAAAATAAGACAAATGCTTCTTTCCGTATCAGAAGTCCAGAACTTGCCAGTATTTGTAGAGTCCCAGCAAGAAGTCACGAAGCTGAAGGCATACATAGAGTAACAAACAATCATAATTTTCACTCCGCGGAATGTGAGGACCAAATCGATCTTAACATTACTGCAATTTGCAGTGCACTCCAACCTCATGGTTTAGAAGAACTAGATGCTGAGGCTTTAGATGTCGGATGTCAGACAAAAGCCACTACGGCTCTTAACAAGGCAGATAAGATCTCAGGCTTTAAAGACAATTCAGGGGATATTCCTAACCTTACAACCTTTCCTCAGAACTCTGTAGGATTAAGATGTAGTAATTTTATTAATTTTAGTTTGCACCAATCATCTGTCTTCCAACCATCTATTATAGTTGGTGGGGATAACCCTTTTCCCACGCCAAGCTTTACAGATGATTCGGGTCTTACTCCTGCAGTAGTACAGGGCGATGAGGATATCCTCAACTCACTTAAAAATGCTCCTCCACTTACGACAGAATCTGTTAACAGCAAAATTGAGCTATCCTCACAATGCTGGTTTACTGACTTAGAATCTTGTTTGCTTAGAAGGGATCAAAGTCAGCGGCCGTCTGAACAGAAATCTCATCCTGATGTTAGGAACTTCACATCTGAATTTCCAACATTTGCTCCTTCCCTTGGGATCTCTGCAACCATCTCTGTTCCAGATCAGTCAGTTGAGCTTGTTCAATCTGCTGGCCCGTCTCAACCTCCCCAAAACGTTGGCAATGCTCTCGCTTCTGGAAATCAAGATGCAAGAGAATTTGGGACAGTTGAAGATTCTGGTATTGCTAAATCAAATCCTCATCCACCAGTGTTCACTTCTTCCCCTGTCTCGGCAAATACTGACATATCATTTCAAGCCCATCTTGCGCAGGTTTACCAACCAATCATTAGTGAGAGCGTTCCACTTGTTTCTTCCAAGTTTGAAGATCTACGAGATCGTTCTTTCCGACGCTCAAGGACCTCACGTTGTTACATAAAATGCCGAGATTTGGATCAAACTCCCAAATTAAGTGGCGAGAGATGCTTCATATGTAAGAGGGATCTTTCATTCAAACCAGAAGGCTCACTTGTCCTTCCAAAAATTCCACCAACTGTGGCAATACTGCCATGTAGCCACGTGTTTCATGGCCTCTGTTTGGAACGCGTCACTCCTCAAAACCAAGCTGAAGATCCTCCCTGTCTTCCTTGTGCTGTTGGCGACACTTGA

Protein sequence

MDSMEKDNLNLRNKLSGFISDDENEESRCLGTIRSDANFNGLHEEYSAASGLHHSQFPDPSVSSHPNLAGSFSDSISYTDIDWSFDGSRLGLSSQKWSNSIYANPKNKTNASFRIRSPELASICRVPARSHEAEGIHRVTNNHNFHSAECEDQIDLNITAICSALQPHGLEELDAEALDVGCQTKATTALNKADKISGFKDNSGDIPNLTTFPQNSVGLRCSNFINFSLHQSSVFQPSIIVGGDNPFPTPSFTDDSGLTPAVVQGDEDILNSLKNAPPLTTESVNSKIELSSQCWFTDLESCLLRRDQSQRPSEQKSHPDVRNFTSEFPTFAPSLGISATISVPDQSVELVQSAGPSQPPQNVGNALASGNQDAREFGTVEDSGIAKSNPHPPVFTSSPVSANTDISFQAHLAQVYQPIISESVPLVSSKFEDLRDRSFRRSRTSRCYIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAEDPPCLPCAVGDT
Homology
[Close]
BLAST of CmaCh17G009130 vs. TrEMBL
Match: A0A0A0K9Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430810 PE=4 SV=1)

HSP 1 Score: 755.0 bits (1948), Expect = 6.2e-215
Identity = 383/527 (72.68%), Postives = 429/527 (81.40%), Query Frame = 1 

Query: 4   MEKDNLNLRNKLSGFISDDENEESRCLGTIRSDANFNGLHEEYSAASGLHHSQFPDPSVS 63
           ME DNL LRN LS FISDDENEE  CL TIRSD NFN LHEEYS A+G HHSQF DP VS
Sbjct: 1   MENDNLKLRNNLSDFISDDENEELGCLDTIRSDVNFNRLHEEYSTAAGFHHSQFSDPPVS 60

Query: 64  SHPNLAGSFSDSISYTDIDWSFDGSRLGLSSQKWSNSIYANPKNKTNASFRIRSPELASI 123
           S P  AGSFSD+ISYTDIDWSFD SRLGLSSQ WS +++ NP+NKTN SF +R+PEL+SI
Sbjct: 61  SRPKFAGSFSDTISYTDIDWSFDSSRLGLSSQNWSRNMFTNPENKTNTSFHVRNPELSSI 120

Query: 124 CRVPARSHEAEGIHRV-----TNNHNFHSAECEDQIDLNITAICSALQPHGLEELDAEAL 183
           CR P RS EAEG+  +     TNNHN  S++CEDQIDLNI AICS  Q H L+E DAE+ 
Sbjct: 121 CRFPVRSQEAEGLDLIGCDTETNNHNLLSSKCEDQIDLNIAAICSGFQTHCLQEHDAESF 180

Query: 184 DVGCQTKATTALNKADKISGFKDNSGDIPNLTTFPQNSVGLRCSNFINFSLHQSSVFQPS 243
           +VG  T  TTALN+ DKISG+KDNSG+IPNLTTFPQNSVG+RCSNFINFSLH SSVFQPS
Sbjct: 181 NVGYHTNPTTALNRTDKISGYKDNSGNIPNLTTFPQNSVGVRCSNFINFSLHPSSVFQPS 240

Query: 244 IIVGGDNPFPTPSFTDDSGLTPAVVQGDEDILNSLKNAPPLTTESVNSKIELSSQCWFTD 303
           IIVGGDNPFP PS  DD  L+  VVQ +EDIL SL+NA P TTES+NS+I +SS+ WFTD
Sbjct: 241 IIVGGDNPFPRPSNEDD--LSADVVQCNEDILKSLRNAAPSTTESINSQIGISSRSWFTD 300

Query: 304 LESCLLRRDQSQRPSEQKSHPDVRNFTSEFPTFAPSLGISATISVPDQSVELVQSAGPSQ 363
           LESCL R+DQSQ+P E+    DVRNF+SEFPT+APSLGIS TISVPDQSVE  QSAGPSQ
Sbjct: 301 LESCLHRKDQSQQPIEET---DVRNFSSEFPTYAPSLGISTTISVPDQSVEHDQSAGPSQ 360

Query: 364 PPQNVGNALASGNQDAREFGTVEDSGIAKSNPHPPVFTSSPVSANTDISFQAHLAQVYQP 423
           PPQN GN+L +GNQDAREFGT EDSGIAKS                   FQAHLAQV QP
Sbjct: 361 PPQNFGNSLTTGNQDAREFGTAEDSGIAKS-------------------FQAHLAQVSQP 420

Query: 424 IISESVPLVSSKFEDLRDRSFRRSRTSRCYIKCRDLDQTPKLSGERCFICKRDLSFKPEG 483
           II ES+PLVSSKFED  DRSF RSR+SRCYIKCRDLDQTPKLSG+RC++CKRDLSFKPEG
Sbjct: 421 IIDESIPLVSSKFEDQGDRSFERSRSSRCYIKCRDLDQTPKLSGQRCYLCKRDLSFKPEG 480

Query: 484 SLVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAEDPPCLPCAVGDT 526
           S+ +PKI PTVA+LPCSHVFHGLCLER+TPQNQAE+PPC+PCAVG+T
Sbjct: 481 SVAIPKILPTVAVLPCSHVFHGLCLERITPQNQAEEPPCIPCAVGET 503

[Close]
BLAST of CmaCh17G009130 vs. TrEMBL
Match: F6HBZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01740 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-22
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 1 

Query: 387 KSNPHPPVFTSSPVSANTDISFQAHLAQVYQPIISESVPLVSSKFEDLRDRSFRRSRTSR 446
           K+ P P +  S P  A            + +P IS S+PL  ++        F  S  + 
Sbjct: 686 KTRPQPSIRPSIPFPA-----------PMPRPSISPSIPL-RARLPQPSTNPFVPSSAAP 745

Query: 447 CYIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCLERV 506
            ++K +  D +P+LSG +C ICKRD+S+ PEG +  P IPP VA+LPC H+FH  CL+ +
Sbjct: 746 -HVKWQGFDGSPELSGLKCLICKRDVSYAPEGHIFQPAIPPAVAVLPCGHIFHDHCLQLI 805

Query: 507 TPQNQAEDPPCLPCAVGDT 526
           TP++Q++DPPC+PCA+G+T
Sbjct: 806 TPKDQSKDPPCIPCAIGET 811

[Close]
BLAST of CmaCh17G009130 vs. TrEMBL
Match: A0A118JY66_CYNCS (Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_023699 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-21
Identity = 56/145 (38.62%), Postives = 84/145 (57.93%), Query Frame = 1 

Query: 391 HPPVFTSSPVSANTDISFQAHLAQVYQ--PIISE---SVPLVSSKFEDLRDRSFRRSRTS 450
           HP +  S P+   T ++     A V+   P+ S+     P+ +S    +   S  +SR  
Sbjct: 607 HPTIHHSVPIPFPTKLAIPGTTALVHPSIPVASQRELGCPVSASIHPSIPGTSHFKSRIP 666

Query: 451 ------RCYIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFH 510
                   +I  +D D+TP+L+G +C +CKRDLS   EG++  P  PP VA+LPC H FH
Sbjct: 667 VKPAPIAAHIAWKDPDRTPQLTGYKCLLCKRDLSLTSEGAVYQPVPPPPVAVLPCGHTFH 726

Query: 511 GLCLERVTPQNQAEDPPCLPCAVGD 525
             CL+ +TPQ+Q++DPPC+PCA+GD
Sbjct: 727 DQCLQNITPQDQSKDPPCIPCAIGD 751

[Close]
BLAST of CmaCh17G009130 vs. TrEMBL
Match: B9GLP1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03350g PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 1 

Query: 448 YIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCLERVT 507
           +IK +D ++TP+LSG +CFICKRDLSF PEG +  P  P  VA+LPC H FH  CLER+T
Sbjct: 709 HIKWQDPEKTPQLSGHQCFICKRDLSFTPEGPVEQPVNPQPVAVLPCHHHFHAFCLERIT 768

Query: 508 PQNQAEDPPCLPCAVGD 525
             + AE+PPC+PCA+GD
Sbjct: 769 TGSDAENPPCIPCAMGD 785

[Close]
BLAST of CmaCh17G009130 vs. TrEMBL
Match: A0A068TSD7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022277001 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 444 TSRCYIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCL 503
           ++  +IK  D +  P+ +G RC +CKRDLSF+PEG +  P  PP VA+LPC H FH  CL
Sbjct: 660 STSAHIKWTDSESPPRPTGHRCMLCKRDLSFRPEGPIYQPINPPAVAVLPCGHTFHDQCL 719

Query: 504 ERVTPQNQAEDPPCLPCAVGD 525
           + +TP++Q++DPPC+PCA+G+
Sbjct: 720 QNITPEDQSKDPPCIPCAIGE 740

[Close]
BLAST of CmaCh17G009130 vs. TAIR10
Match: AT5G18260.1 (AT5G18260.1 RING/U-box superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 4.5e-07
Identity = 24/65 (36.92%), Postives = 36/65 (55.38%), Query Frame = 1 

Query: 460 LSGERCFICKRDLSFKPEGS---LVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAEDPP 519
           ++ +RC ICK+ LS K   S   ++  +  P   + PC HV+H  CL++ TP  Q  DP 
Sbjct: 187 MTHQRCGICKKLLSQKSPWSSYKILRSRDMPATGVFPCHHVYHVECLDKATPTAQTRDPS 246

Query: 520 CLPCA 522
           C  C+
Sbjct: 247 CPVCS 251

[Close]
BLAST of CmaCh17G009130 vs. TAIR10
Match: AT4G39140.1 (AT4G39140.1 RING/U-box superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.5e-06
Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = 1 

Query: 465 CFICKRDLSFKPEGS---LVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAEDPPCLPCA 524
           C  C R LS K   S   + +       AIL C HV+HG CLE++TP+    DP C  C 
Sbjct: 260 CGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICT 319

[Close]
BLAST of CmaCh17G009130 vs. NCBI nr
Match: gi|778728849|ref|XP_011659485.1| (PREDICTED: uncharacterized protein LOC105436188 [Cucumis sativus])

HSP 1 Score: 759.2 bits (1959), Expect = 4.7e-216
Identity = 385/530 (72.64%), Postives = 432/530 (81.51%), Query Frame = 1 

Query: 1   MDSMEKDNLNLRNKLSGFISDDENEESRCLGTIRSDANFNGLHEEYSAASGLHHSQFPDP 60
           MD+ME DNL LRN LS FISDDENEE  CL TIRSD NFN LHEEYS A+G HHSQF DP
Sbjct: 1   MDTMENDNLKLRNNLSDFISDDENEELGCLDTIRSDVNFNRLHEEYSTAAGFHHSQFSDP 60

Query: 61  SVSSHPNLAGSFSDSISYTDIDWSFDGSRLGLSSQKWSNSIYANPKNKTNASFRIRSPEL 120
            VSS P  AGSFSD+ISYTDIDWSFD SRLGLSSQ WS +++ NP+NKTN SF +R+PEL
Sbjct: 61  PVSSRPKFAGSFSDTISYTDIDWSFDSSRLGLSSQNWSRNMFTNPENKTNTSFHVRNPEL 120

Query: 121 ASICRVPARSHEAEGIHRV-----TNNHNFHSAECEDQIDLNITAICSALQPHGLEELDA 180
           +SICR P RS EAEG+  +     TNNHN  S++CEDQIDLNI AICS  Q H L+E DA
Sbjct: 121 SSICRFPVRSQEAEGLDLIGCDTETNNHNLLSSKCEDQIDLNIAAICSGFQTHCLQEHDA 180

Query: 181 EALDVGCQTKATTALNKADKISGFKDNSGDIPNLTTFPQNSVGLRCSNFINFSLHQSSVF 240
           E+ +VG  T  TTALN+ DKISG+KDNSG+IPNLTTFPQNSVG+RCSNFINFSLH SSVF
Sbjct: 181 ESFNVGYHTNPTTALNRTDKISGYKDNSGNIPNLTTFPQNSVGVRCSNFINFSLHPSSVF 240

Query: 241 QPSIIVGGDNPFPTPSFTDDSGLTPAVVQGDEDILNSLKNAPPLTTESVNSKIELSSQCW 300
           QPSIIVGGDNPFP PS  DD  L+  VVQ +EDIL SL+NA P TTES+NS+I +SS+ W
Sbjct: 241 QPSIIVGGDNPFPRPSNEDD--LSADVVQCNEDILKSLRNAAPSTTESINSQIGISSRSW 300

Query: 301 FTDLESCLLRRDQSQRPSEQKSHPDVRNFTSEFPTFAPSLGISATISVPDQSVELVQSAG 360
           FTDLESCL R+DQSQ+P E+    DVRNF+SEFPT+APSLGIS TISVPDQSVE  QSAG
Sbjct: 301 FTDLESCLHRKDQSQQPIEET---DVRNFSSEFPTYAPSLGISTTISVPDQSVEHDQSAG 360

Query: 361 PSQPPQNVGNALASGNQDAREFGTVEDSGIAKSNPHPPVFTSSPVSANTDISFQAHLAQV 420
           PSQPPQN GN+L +GNQDAREFGT EDSGIAKS                   FQAHLAQV
Sbjct: 361 PSQPPQNFGNSLTTGNQDAREFGTAEDSGIAKS-------------------FQAHLAQV 420

Query: 421 YQPIISESVPLVSSKFEDLRDRSFRRSRTSRCYIKCRDLDQTPKLSGERCFICKRDLSFK 480
            QPII ES+PLVSSKFED  DRSF RSR+SRCYIKCRDLDQTPKLSG+RC++CKRDLSFK
Sbjct: 421 SQPIIDESIPLVSSKFEDQGDRSFERSRSSRCYIKCRDLDQTPKLSGQRCYLCKRDLSFK 480

Query: 481 PEGSLVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAEDPPCLPCAVGDT 526
           PEGS+ +PKI PTVA+LPCSHVFHGLCLER+TPQNQAE+PPC+PCAVG+T
Sbjct: 481 PEGSVAIPKILPTVAVLPCSHVFHGLCLERITPQNQAEEPPCIPCAVGET 506

[Close]
BLAST of CmaCh17G009130 vs. NCBI nr
Match: gi|700189964|gb|KGN45197.1| (hypothetical protein Csa_7G430810 [Cucumis sativus])

HSP 1 Score: 755.0 bits (1948), Expect = 8.9e-215
Identity = 383/527 (72.68%), Postives = 429/527 (81.40%), Query Frame = 1 

Query: 4   MEKDNLNLRNKLSGFISDDENEESRCLGTIRSDANFNGLHEEYSAASGLHHSQFPDPSVS 63
           ME DNL LRN LS FISDDENEE  CL TIRSD NFN LHEEYS A+G HHSQF DP VS
Sbjct: 1   MENDNLKLRNNLSDFISDDENEELGCLDTIRSDVNFNRLHEEYSTAAGFHHSQFSDPPVS 60

Query: 64  SHPNLAGSFSDSISYTDIDWSFDGSRLGLSSQKWSNSIYANPKNKTNASFRIRSPELASI 123
           S P  AGSFSD+ISYTDIDWSFD SRLGLSSQ WS +++ NP+NKTN SF +R+PEL+SI
Sbjct: 61  SRPKFAGSFSDTISYTDIDWSFDSSRLGLSSQNWSRNMFTNPENKTNTSFHVRNPELSSI 120

Query: 124 CRVPARSHEAEGIHRV-----TNNHNFHSAECEDQIDLNITAICSALQPHGLEELDAEAL 183
           CR P RS EAEG+  +     TNNHN  S++CEDQIDLNI AICS  Q H L+E DAE+ 
Sbjct: 121 CRFPVRSQEAEGLDLIGCDTETNNHNLLSSKCEDQIDLNIAAICSGFQTHCLQEHDAESF 180

Query: 184 DVGCQTKATTALNKADKISGFKDNSGDIPNLTTFPQNSVGLRCSNFINFSLHQSSVFQPS 243
           +VG  T  TTALN+ DKISG+KDNSG+IPNLTTFPQNSVG+RCSNFINFSLH SSVFQPS
Sbjct: 181 NVGYHTNPTTALNRTDKISGYKDNSGNIPNLTTFPQNSVGVRCSNFINFSLHPSSVFQPS 240

Query: 244 IIVGGDNPFPTPSFTDDSGLTPAVVQGDEDILNSLKNAPPLTTESVNSKIELSSQCWFTD 303
           IIVGGDNPFP PS  DD  L+  VVQ +EDIL SL+NA P TTES+NS+I +SS+ WFTD
Sbjct: 241 IIVGGDNPFPRPSNEDD--LSADVVQCNEDILKSLRNAAPSTTESINSQIGISSRSWFTD 300

Query: 304 LESCLLRRDQSQRPSEQKSHPDVRNFTSEFPTFAPSLGISATISVPDQSVELVQSAGPSQ 363
           LESCL R+DQSQ+P E+    DVRNF+SEFPT+APSLGIS TISVPDQSVE  QSAGPSQ
Sbjct: 301 LESCLHRKDQSQQPIEET---DVRNFSSEFPTYAPSLGISTTISVPDQSVEHDQSAGPSQ 360

Query: 364 PPQNVGNALASGNQDAREFGTVEDSGIAKSNPHPPVFTSSPVSANTDISFQAHLAQVYQP 423
           PPQN GN+L +GNQDAREFGT EDSGIAKS                   FQAHLAQV QP
Sbjct: 361 PPQNFGNSLTTGNQDAREFGTAEDSGIAKS-------------------FQAHLAQVSQP 420

Query: 424 IISESVPLVSSKFEDLRDRSFRRSRTSRCYIKCRDLDQTPKLSGERCFICKRDLSFKPEG 483
           II ES+PLVSSKFED  DRSF RSR+SRCYIKCRDLDQTPKLSG+RC++CKRDLSFKPEG
Sbjct: 421 IIDESIPLVSSKFEDQGDRSFERSRSSRCYIKCRDLDQTPKLSGQRCYLCKRDLSFKPEG 480

Query: 484 SLVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAEDPPCLPCAVGDT 526
           S+ +PKI PTVA+LPCSHVFHGLCLER+TPQNQAE+PPC+PCAVG+T
Sbjct: 481 SVAIPKILPTVAVLPCSHVFHGLCLERITPQNQAEEPPCIPCAVGET 503

[Close]
BLAST of CmaCh17G009130 vs. NCBI nr
Match: gi|659122566|ref|XP_008461211.1| (PREDICTED: uncharacterized protein LOC103499862 [Cucumis melo])

HSP 1 Score: 656.8 bits (1693), Expect = 3.3e-185
Identity = 352/551 (63.88%), Postives = 408/551 (74.05%), Query Frame = 1 

Query: 1   MDSMEKDNLNLRNKLSGFISDDENEESRCLGTIRSDANFNGLHEEYSAASGLHHSQFPDP 60
           MD+ME DNL LRN LS FISDDENEE  CL TIRSD NFNGLHEEYS A+G HHSQF DP
Sbjct: 1   MDTMENDNLKLRNSLSDFISDDENEEFGCLDTIRSDVNFNGLHEEYSTAAGFHHSQFSDP 60

Query: 61  SVSSHPNLAGSFSDSISYTDIDWSFDGSRLGLSSQKWSNSIYANPKNKTNASFRIRSPEL 120
            VSSHP  AGSFSD+ISYTDIDWSFD SRLGLSSQ WS+S++ NP+NKTN SF +R+PEL
Sbjct: 61  PVSSHPKFAGSFSDTISYTDIDWSFDSSRLGLSSQNWSHSMFTNPENKTNTSFHVRNPEL 120

Query: 121 ASICRVPARSHEAEGIH-----RVTNNHNFHSAECEDQIDLNITAICSALQPHGLEELDA 180
           +SICR P RS EAEG+      R  NNHN  S++CEDQIDLNI AICS  Q H L+E DA
Sbjct: 121 SSICRFPVRSQEAEGLDLIGCDRDANNHNLQSSKCEDQIDLNIAAICSGFQTHCLQEHDA 180

Query: 181 EALDVGCQTKATTALNKADKISGFKDNSGDIPNLTTFPQNSVGLRCSNFINFSLHQSSVF 240
           E  +VG  T  TT+LN+ DKISG+KDNSG+IPNLTTFPQNSVGLRCSN INFSLH SS F
Sbjct: 181 ETFNVGYHTNPTTSLNRTDKISGYKDNSGNIPNLTTFPQNSVGLRCSNLINFSLHPSSAF 240

Query: 241 QPSIIVGGDNPFPTPSFTDDSGLTPAVVQGDEDILNSLKNAPPLTTESVNSKIELSSQCW 300
           Q SIIVGGDNPFP PS  +D G +  V++ +EDIL SL++A P TTES+NS+I +SS+ W
Sbjct: 241 QQSIIVGGDNPFPRPS--NDDGWSADVMKCNEDILKSLRSAAPSTTESINSQIGISSRSW 300

Query: 301 FTDLESCLLRRDQSQRPSEQKSHPDVRNFTSEFPTFAPSLGISATISVPDQSVELVQSAG 360
           FTDLESCL  RDQSQ+P E     DVRNF+SEFPT+APSLGISATISVPDQS E  QS G
Sbjct: 301 FTDLESCLHIRDQSQQPIET----DVRNFSSEFPTYAPSLGISATISVPDQSFEHDQS-G 360

Query: 361 PSQPPQNVGNALASGNQDAREFGTVEDSGIAKS------NPHPPVF------TSSPVSAN 420
           PSQPPQN G++L +GNQDAREFGT EDSGIAKS          P+        SS     
Sbjct: 361 PSQPPQNFGDSLTTGNQDAREFGTAEDSGIAKSFQAHLAKVSQPIIDESIPLVSSEFEDQ 420

Query: 421 TDISFQAHLAQVYQPIISESVPLVSSKFEDLRDRSFRRSRTSRCY---------IKCRDL 480
            D SF+   +  Y      SV    +  +  RD + +   +  C+            + L
Sbjct: 421 RDRSFERSKSSRYIKCRGTSVSYTQT-IQTSRDAN-KILLSHWCHHIFGSIDDLTGNQKL 480

Query: 481 DQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCLERVTPQNQAED 526
           DQTPKLSG+RC++CKRDLSFKPEGS+ +PKI PTVA+LPCSHVFHGLCLER+TPQNQAE+
Sbjct: 481 DQTPKLSGQRCYLCKRDLSFKPEGSVAIPKILPTVAVLPCSHVFHGLCLERITPQNQAEE 540

[Close]
BLAST of CmaCh17G009130 vs. NCBI nr
Match: gi|731403664|ref|XP_010655144.1| (PREDICTED: uncharacterized protein LOC100853391 isoform X1 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-22
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 1 

Query: 387 KSNPHPPVFTSSPVSANTDISFQAHLAQVYQPIISESVPLVSSKFEDLRDRSFRRSRTSR 446
           K+ P P +  S P  A            + +P IS S+PL  ++        F  S  + 
Sbjct: 686 KTRPQPSIRPSIPFPA-----------PMPRPSISPSIPL-RARLPQPSTNPFVPSSAAP 745

Query: 447 CYIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCLERV 506
            ++K +  D +P+LSG +C ICKRD+S+ PEG +  P IPP VA+LPC H+FH  CL+ +
Sbjct: 746 -HVKWQGFDGSPELSGLKCLICKRDVSYAPEGHIFQPAIPPAVAVLPCGHIFHDHCLQLI 805

Query: 507 TPQNQAEDPPCLPCAVGDT 526
           TP++Q++DPPC+PCA+G+T
Sbjct: 806 TPKDQSKDPPCIPCAIGET 811

[Close]
BLAST of CmaCh17G009130 vs. NCBI nr
Match: gi|298204770|emb|CBI25268.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-22
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 1 

Query: 387 KSNPHPPVFTSSPVSANTDISFQAHLAQVYQPIISESVPLVSSKFEDLRDRSFRRSRTSR 446
           K+ P P +  S P  A            + +P IS S+PL  ++        F  S  + 
Sbjct: 619 KTRPQPSIRPSIPFPA-----------PMPRPSISPSIPL-RARLPQPSTNPFVPSSAAP 678

Query: 447 CYIKCRDLDQTPKLSGERCFICKRDLSFKPEGSLVLPKIPPTVAILPCSHVFHGLCLERV 506
            ++K +  D +P+LSG +C ICKRD+S+ PEG +  P IPP VA+LPC H+FH  CL+ +
Sbjct: 679 -HVKWQGFDGSPELSGLKCLICKRDVSYAPEGHIFQPAIPPAVAVLPCGHIFHDHCLQLI 738

Query: 507 TPQNQAEDPPCLPCAVGDT 526
           TP++Q++DPPC+PCA+G+T
Sbjct: 739 TPKDQSKDPPCIPCAIGET 744

The following BLAST results are available for this feature:
BLAST of CmaCh17G009130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G009130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9Y2_CUCSA6.2e-21572.68Uncharacterized protein OS=Cucumis sativus GN=Csa_7G430810 PE=4 SV=1[more]
F6HBZ0_VITVI5.5e-2240.29Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01740 PE=4 SV=... [more]
A0A118JY66_CYNCS2.7e-2138.62Zinc finger, RING/FYVE/PHD-type OS=Cynara cardunculus var. scolymus GN=Ccrd_0236... [more]
B9GLP1_POPTR8.0e-2159.74Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03350g PE=4 SV=1[more]
A0A068TSD7_COFCA1.4e-2050.62Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022277001 PE=4 SV=1[more]
BLAST of CmaCh17G009130 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G18260.14.5e-0736.92 RING/U-box superfamily protein[more]
AT4G39140.18.5e-0639.68 RING/U-box superfamily protein[more]
BLAST of CmaCh17G009130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778728849|ref|XP_011659485.1|4.7e-21672.64PREDICTED: uncharacterized protein LOC105436188 [Cucumis sativus][more]
gi|700189964|gb|KGN45197.1|8.9e-21572.68hypothetical protein Csa_7G430810 [Cucumis sativus][more]
gi|659122566|ref|XP_008461211.1|3.3e-18563.88PREDICTED: uncharacterized protein LOC103499862 [Cucumis melo][more]
gi|731403664|ref|XP_010655144.1|7.9e-2240.29PREDICTED: uncharacterized protein LOC100853391 isoform X1 [Vitis vinifera][more]
gi|298204770|emb|CBI25268.3|7.9e-2240.29unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G009130.1CmaCh17G009130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 465..520
score:
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 462..510
score: 2.
NoneNo IPR availablePANTHERPTHR31150FAMILY NOT NAMEDcoord: 454..525
score: 3.7E-33coord: 397..434
score: 3.7
NoneNo IPR availablePANTHERPTHR31150:SF5ZINC ION BINDING PROTEINcoord: 397..434
score: 3.7E-33coord: 454..525
score: 3.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 459..512
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G009130Cla015305Watermelon (97103) v1cmawmB328
CmaCh17G009130Csa7G430810Cucumber (Chinese Long) v2cmacuB388
CmaCh17G009130MELO3C023487Melon (DHL92) v3.5.1cmameB326
CmaCh17G009130ClCG09G003500Watermelon (Charleston Gray)cmawcgB306
CmaCh17G009130CSPI07G19900Wild cucumber (PI 183967)cmacpiB392
CmaCh17G009130CmoCh17G008840Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G009130Cp4.1LG12g07190Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G009130MELO3C023487.2Melon (DHL92) v3.6.1cmamedB379
CmaCh17G009130CsaV3_7G031700Cucumber (Chinese Long) v3cmacucB0462
CmaCh17G009130Cla97C09G165740Watermelon (97103) v2cmawmbB387
CmaCh17G009130Bhi09G000452Wax gourdcmawgoB0487
CmaCh17G009130CsGy7G018180Cucumber (Gy14) v2cgybcmaB925
CmaCh17G009130Carg18721Silver-seed gourdcarcmaB0497
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G009130Cucurbita maxima (Rimu)cmacmaB250
CmaCh17G009130Cucurbita maxima (Rimu)cmacmaB360
CmaCh17G009130Cucurbita maxima (Rimu)cmacmaB382
CmaCh17G009130Cucumber (Gy14) v1cgycmaB0237
CmaCh17G009130Cucurbita moschata (Rifu)cmacmoB351
CmaCh17G009130Cucurbita moschata (Rifu)cmacmoB354
CmaCh17G009130Cucurbita moschata (Rifu)cmacmoB374
CmaCh17G009130Wild cucumber (PI 183967)cmacpiB365
CmaCh17G009130Cucumber (Chinese Long) v2cmacuB361
CmaCh17G009130Melon (DHL92) v3.5.1cmameB333
CmaCh17G009130Watermelon (Charleston Gray)cmawcgB314
CmaCh17G009130Watermelon (97103) v1cmawmB336
CmaCh17G009130Cucurbita pepo (Zucchini)cmacpeB399
CmaCh17G009130Cucurbita pepo (Zucchini)cmacpeB376
CmaCh17G009130Cucurbita pepo (Zucchini)cmacpeB404
CmaCh17G009130Bottle gourd (USVL1VR-Ls)cmalsiB348
CmaCh17G009130Bottle gourd (USVL1VR-Ls)cmalsiB351
CmaCh17G009130Silver-seed gourdcarcmaB0625
CmaCh17G009130Silver-seed gourdcarcmaB1133
CmaCh17G009130Watermelon (97103) v2cmawmbB360