CmaCh17G006530 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G006530
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionABA-responsive LEA-like protein
LocationCma_Chr17 : 5504425 .. 5506554 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGGAAATGGTCTTTACTTGAGACATGACTAAGCTTACTGGAAATGGTGTTTACTTGATAAGGTACGTTCTTCTCAGCCTGGTTTTATATGTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGTAATATCACAGGTTGGGGAGGAGAACAAACCCCTTATAGGGTGTGAAAACTTTTCTCTAGTAAACACGTTTTAAAGTATTGAGGGGAAGCCTAAAAGGGAGAGCTTAAGGAAGACAATATCTGTTAGTAGTAGGTCTGGACTGTATCAGAGCCAGACATTGGGTGGTGTGCCAGTAAGGACACTGGGCCCTGAAGGGAGTGGATTTGGTGGGAGTTTCATATTGATTGGAAAATGGAATGAGTGTTAGCGAGACGCTGAGCCTTGAAGGCGGTGGATTGTGATATCCCACTGGTGAGGAGAACGAAACACCCTTAGAAAGGGGGTGAATTGTGATATCCTAATGGGGAGGAGAACGAAATACCCTTTATAAGGGTTTGGGTGTGAAAACCTTTCCCTGCCATTTTAAGGTCTTGAGGGGAAGCTCAAAAGGGAAACCCAAAGAAGACAATGTTTGCTAGTGGTGGGCCTATACGGTTACAAATGGTATCAGAGCCACTGACAATGTGCCAACGAGGAGGACAATGTTTGCTAGTGGTGGTCCTAGACGGTTACAAATAGTATCAGAGCCACTGGCAATGTGCCAACGAGGAGGCTGTTCCCCGAAGGGGGCAGACACGAGGCGGTGTGCCAGTAAGGATGGGTCCCGAAGGGGTGAATTTGGTGGAAGTCCCACATCAATTGAAGAATGGAACGAGTGACAGCGAGGATACTGGGCCCTGAAGGGGGGTAGATTGTGATATCCCAGTAAGGAGGAGAACGAAACACCCTTAGAAGGGGGTAGATTGTGATATCTTACTGGGGAGGAGAACGAAACACTCTTTATAAGGGTGTGAAAACCTTTCCTAACCGACGCGTTTTAAAGCCTTGAGTGTTACATTTTTCTTCATGTTCTTGTCTAATTTAGCAATGCAATATTAGGCGACTGAGCTCATCGGTTGCATACAAGCAACTTAAAGCACGAGCAACTGCACCGATGGTGACGAAGAAGGTGATAGCAGGTGTGGAAATGAGCGGTTCGGATGATATCAAGGCAGTTGAAGAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAAAACTGCTACTCAAAAAAGCTTCATAAATCTCCACCTTTATCTATCTTATCCATGCTAAAACTATTGTACCACATACTTTTTTTCTCTCTCTCTCTATCTTTCTATCTAATCTGTCACTTTTGTTAGCTTAATTGGAATGATTTTGACAGATGACACGAGGGAATCCGAATCTAATCAAGTTTGTCAATGAAAGCAGATCGTCAAATCACAGAATTCGCACAAATCAAGTCAGATGAATAGGACTATGTAAACTATAGATAAGAGAATTCAAATTTATGACCAATTGGGTCAATAATATATCAGTTGAGTTATACTCAAGTTGACACTTAACATATATAATGTCATTTATATGTTGTGAGGTTCTACGTTGGTTGGGAACGAGAATGAAACATTCTTGATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATTAAAGAAGACAATATTTGCTAGCGATGGGATTGAGCCGTTTCAGGGCTTGGGCCGAA

mRNA sequence

TAGGAAATGGTCTTTACTTGAGACATGACTAAGCTTACTGGAAATGGTGTTTACTTGATAAGGCGACTGAGCTCATCGGTTGCATACAAGCAACTTAAAGCACGAGCAACTGCACCGATGGTGACGAAGAAGGTGATAGCAGGTGTGGAAATGAGCGGTTCGGATGATATCAAGGCAGTTGAAGAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAAAACTGCTACTCAAAAAAGCTTCATAAATCTCCACCTTTATCTATCTTATCCATGCTAAAACTATTGTACCACATACTTTTTTTCTCTCTCTCTCTATCTTTCTATCTAATCTGTCACTTTTGTTAGCTTAATTGGAATGATTTTGACAGATGACACGAGGGAATCCGAATCTAATCAAGTTTGTCAATGAAAGCAGATCGTCAAATCACAGAATTCGCACAAATCAAGTCAGATGAATAGGACTATGTAAACTATAGATAAGAGAATTCAAATTTATGACCAATTGGGTCAATAATATATCAGTTGAGTTATACTCAAGTTGACACTTAACATATATAATGTCATTTATATGTTGTGAGGTTCTACGTTGGTTGGGAACGAGAATGAAACATTCTTGATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATTAAAGAAGACAATATTTGCTAGCGATGGGATTGAGCCGTTTCAGGGCTTGGGCCGAA

Coding sequence (CDS)

ATGACTAAGCTTACTGGAAATGGTGTTTACTTGATAAGGCGACTGAGCTCATCGGTTGCATACAAGCAACTTAAAGCACGAGCAACTGCACCGATGGTGACGAAGAAGGTGATAGCAGGTGTGGAAATGAGCGGTTCGGATGATATCAAGGCAGTTGAAGAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAA

Protein sequence

MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF
BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A0A0K7L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWM 60
          M K+TGN +Y IRR+SSSVA +QLKA+ TA MV +KV A VE  G D+ + VE+K  FWM
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDN-EVVEQKKTFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKL 94
          KDPKSGNWIPENHF E+DVVELREKLL+K KKL
Sbjct: 61 KDPKSGNWIPENHFEEMDVVELREKLLAKPKKL 92

BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A061G6G1_THECC (Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_016756 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-13
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKA---VEEKNI 60
          M +L+     L+ R S +VA + +K +A A +          M  + D++A    E+K  
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASV----------MRNATDLRAEVLAEQKET 60

Query: 61 FWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK 93
          FWM+DPK+GNWIPENHFG+IDV ELREK LSK +K
Sbjct: 61 FWMRDPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A061GBY1_THECC (Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_029240 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWM 60
          M +L+     L+ R S +VA + +K +A A +         E+         E+K  FWM
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVTRNATDLRAEV-------LAEQKETFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKK 93
          +DPK+GNWIPENHFG+IDV ELREK LSK +K
Sbjct: 61 RDPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A068TR10_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021704001 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 4  LTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAV----EEKNIFW 63
          L  NG  L  R + +VA + +KA+  A ++ K  +A    S  D  K +     ++ +FW
Sbjct: 5  LRSNGAVLFLRRAYTVAVENVKAQPAASVMRK--VAEPSTSNIDVGKELVVQGAKREVFW 64

Query: 64 MKDPKSGNWIPENHFGEIDVVELREKLLSKTKK 93
          MKDPK+GNWIPENHF E+D  ELREK LSK  K
Sbjct: 65 MKDPKTGNWIPENHFNEVDAAELREKFLSKAPK 95

BLAST of CmaCh17G006530 vs. TrEMBL
Match: B9GXY8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06960g PE=4 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 8.7e-11
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWM 60
          M KL    V L+ + S  +A + L  +  A  V +K     ++  S+D++    K  FWM
Sbjct: 1  MGKLQIKNVMLLSKRSYGIATENLSKQKAAISVMRKAR---DVKSSEDLETGGSKE-FWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF 95
          +DPK+GNWIPE+HFG+IDV E+REK+LSK  + F
Sbjct: 61 RDPKTGNWIPESHFGDIDVAEMREKILSKKDQRF 90

BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|700190210|gb|KGN45443.1| (hypothetical protein Csa_7G448050 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.8e-26
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWM 60
          M K+TGN +Y IRR+SSSVA +QLKA+ TA MV +KV A VE  G D+ + VE+K  FWM
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDN-EVVEQKKTFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKL 94
          KDPKSGNWIPENHF E+DVVELREKLL+K KKL
Sbjct: 61 KDPKSGNWIPENHFEEMDVVELREKLLAKPKKL 92

BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|590680759|ref|XP_007040949.1| (Senescence-associated gene 21, putative [Theobroma cacao])

HSP 1 Score: 81.6 bits (200), Expect = 7.8e-13
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKA---VEEKNI 60
          M +L+     L+ R S +VA + +K +A A +          M  + D++A    E+K  
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASV----------MRNATDLRAEVLAEQKET 60

Query: 61 FWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK 93
          FWM+DPK+GNWIPENHFG+IDV ELREK LSK +K
Sbjct: 61 FWMRDPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|590621323|ref|XP_007024758.1| (Senescence-associated gene 21, putative [Theobroma cacao])

HSP 1 Score: 79.3 bits (194), Expect = 3.9e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWM 60
          M +L+     L+ R S +VA + +K +A A +         E+         E+K  FWM
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVTRNATDLRAEV-------LAEQKETFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKK 93
          +DPK+GNWIPENHFG+IDV ELREK LSK +K
Sbjct: 61 RDPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|661897831|emb|CDO97798.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1

Query: 4  LTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAV----EEKNIFW 63
          L  NG  L  R + +VA + +KA+  A ++ K  +A    S  D  K +     ++ +FW
Sbjct: 5  LRSNGAVLFLRRAYTVAVENVKAQPAASVMRK--VAEPSTSNIDVGKELVVQGAKREVFW 64

Query: 64 MKDPKSGNWIPENHFGEIDVVELREKLLSKTKK 93
          MKDPK+GNWIPENHF E+D  ELREK LSK  K
Sbjct: 65 MKDPKTGNWIPENHFNEVDAAELREKFLSKAPK 95

BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|566161294|ref|XP_002303328.2| (hypothetical protein POPTR_0003s06960g [Populus trichocarpa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1

Query: 1  MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWM 60
          M KL    V L+ + S  +A + L  +  A  V +K     ++  S+D++    K  FWM
Sbjct: 1  MGKLQIKNVMLLSKRSYGIATENLSKQKAAISVMRKAR---DVKSSEDLETGGSKE-FWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF 95
          +DPK+GNWIPE+HFG+IDV E+REK+LSK  + F
Sbjct: 61 RDPKTGNWIPESHFGDIDVAEMREKILSKKDQRF 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7L4_CUCSA1.9e-2668.82Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448050 PE=4 SV=1[more]
A0A061G6G1_THECC5.4e-1345.26Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_016756 PE=4 SV... [more]
A0A061GBY1_THECC2.7e-1244.57Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_029240 PE=4 SV... [more]
A0A068TR10_COFCA7.9e-1245.16Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021704001 PE=4 SV=1[more]
B9GXY8_POPTR8.7e-1142.55Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06960g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700190210|gb|KGN45443.1|2.8e-2668.82hypothetical protein Csa_7G448050 [Cucumis sativus][more]
gi|590680759|ref|XP_007040949.1|7.8e-1345.26Senescence-associated gene 21, putative [Theobroma cacao][more]
gi|590621323|ref|XP_007024758.1|3.9e-1244.57Senescence-associated gene 21, putative [Theobroma cacao][more]
gi|661897831|emb|CDO97798.1|1.1e-1145.16unnamed protein product [Coffea canephora][more]
gi|566161294|ref|XP_002303328.2|1.2e-1042.55hypothetical protein POPTR_0003s06960g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G006530.1CmaCh17G006530.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA5-typePFAMPF03242LEA_3coord: 13..87
score: 1.6
NoneNo IPR availablePANTHERPTHR33509FAMILY NOT NAMEDcoord: 9..94
score: 9.8
NoneNo IPR availablePANTHERPTHR33509:SF2SUBFAMILY NOT NAMEDcoord: 9..94
score: 9.8

The following gene(s) are paralogous to this gene:

None