CmaCh17G006530 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGGAAATGGTCTTTACTTGAGACATGACTAAGCTTACTGGAAATGGTGTTTACTTGATAAGGTACGTTCTTCTCAGCCTGGTTTTATATGTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTGTAATATCACAGGTTGGGGAGGAGAACAAACCCCTTATAGGGTGTGAAAACTTTTCTCTAGTAAACACGTTTTAAAGTATTGAGGGGAAGCCTAAAAGGGAGAGCTTAAGGAAGACAATATCTGTTAGTAGTAGGTCTGGACTGTATCAGAGCCAGACATTGGGTGGTGTGCCAGTAAGGACACTGGGCCCTGAAGGGAGTGGATTTGGTGGGAGTTTCATATTGATTGGAAAATGGAATGAGTGTTAGCGAGACGCTGAGCCTTGAAGGCGGTGGATTGTGATATCCCACTGGTGAGGAGAACGAAACACCCTTAGAAAGGGGGTGAATTGTGATATCCTAATGGGGAGGAGAACGAAATACCCTTTATAAGGGTTTGGGTGTGAAAACCTTTCCCTGCCATTTTAAGGTCTTGAGGGGAAGCTCAAAAGGGAAACCCAAAGAAGACAATGTTTGCTAGTGGTGGGCCTATACGGTTACAAATGGTATCAGAGCCACTGACAATGTGCCAACGAGGAGGACAATGTTTGCTAGTGGTGGTCCTAGACGGTTACAAATAGTATCAGAGCCACTGGCAATGTGCCAACGAGGAGGCTGTTCCCCGAAGGGGGCAGACACGAGGCGGTGTGCCAGTAAGGATGGGTCCCGAAGGGGTGAATTTGGTGGAAGTCCCACATCAATTGAAGAATGGAACGAGTGACAGCGAGGATACTGGGCCCTGAAGGGGGGTAGATTGTGATATCCCAGTAAGGAGGAGAACGAAACACCCTTAGAAGGGGGTAGATTGTGATATCTTACTGGGGAGGAGAACGAAACACTCTTTATAAGGGTGTGAAAACCTTTCCTAACCGACGCGTTTTAAAGCCTTGAGTGTTACATTTTTCTTCATGTTCTTGTCTAATTTAGCAATGCAATATTAGGCGACTGAGCTCATCGGTTGCATACAAGCAACTTAAAGCACGAGCAACTGCACCGATGGTGACGAAGAAGGTGATAGCAGGTGTGGAAATGAGCGGTTCGGATGATATCAAGGCAGTTGAAGAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAAAACTGCTACTCAAAAAAGCTTCATAAATCTCCACCTTTATCTATCTTATCCATGCTAAAACTATTGTACCACATACTTTTTTTCTCTCTCTCTCTATCTTTCTATCTAATCTGTCACTTTTGTTAGCTTAATTGGAATGATTTTGACAGATGACACGAGGGAATCCGAATCTAATCAAGTTTGTCAATGAAAGCAGATCGTCAAATCACAGAATTCGCACAAATCAAGTCAGATGAATAGGACTATGTAAACTATAGATAAGAGAATTCAAATTTATGACCAATTGGGTCAATAATATATCAGTTGAGTTATACTCAAGTTGACACTTAACATATATAATGTCATTTATATGTTGTGAGGTTCTACGTTGGTTGGGAACGAGAATGAAACATTCTTGATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATTAAAGAAGACAATATTTGCTAGCGATGGGATTGAGCCGTTTCAGGGCTTGGGCCGAA TAGGAAATGGTCTTTACTTGAGACATGACTAAGCTTACTGGAAATGGTGTTTACTTGATAAGGCGACTGAGCTCATCGGTTGCATACAAGCAACTTAAAGCACGAGCAACTGCACCGATGGTGACGAAGAAGGTGATAGCAGGTGTGGAAATGAGCGGTTCGGATGATATCAAGGCAGTTGAAGAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAAAACTGCTACTCAAAAAAGCTTCATAAATCTCCACCTTTATCTATCTTATCCATGCTAAAACTATTGTACCACATACTTTTTTTCTCTCTCTCTCTATCTTTCTATCTAATCTGTCACTTTTGTTAGCTTAATTGGAATGATTTTGACAGATGACACGAGGGAATCCGAATCTAATCAAGTTTGTCAATGAAAGCAGATCGTCAAATCACAGAATTCGCACAAATCAAGTCAGATGAATAGGACTATGTAAACTATAGATAAGAGAATTCAAATTTATGACCAATTGGGTCAATAATATATCAGTTGAGTTATACTCAAGTTGACACTTAACATATATAATGTCATTTATATGTTGTGAGGTTCTACGTTGGTTGGGAACGAGAATGAAACATTCTTGATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATTAAAGAAGACAATATTTGCTAGCGATGGGATTGAGCCGTTTCAGGGCTTGGGCCGAA ATGACTAAGCTTACTGGAAATGGTGTTTACTTGATAAGGCGACTGAGCTCATCGGTTGCATACAAGCAACTTAAAGCACGAGCAACTGCACCGATGGTGACGAAGAAGGTGATAGCAGGTGTGGAAATGAGCGGTTCGGATGATATCAAGGCAGTTGAAGAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTGGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAA MTKLTGNGVYLIRRLSSSVAYKQLKARATAPMVTKKVIAGVEMSGSDDIKAVEEKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF
BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A0A0K7L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448050 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26 Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 1
BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A061G6G1_THECC (Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_016756 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 5.4e-13 Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A061GBY1_THECC (Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_029240 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 2.7e-12 Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1
BLAST of CmaCh17G006530 vs. TrEMBL
Match: A0A068TR10_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021704001 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 7.9e-12 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1
BLAST of CmaCh17G006530 vs. TrEMBL
Match: B9GXY8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s06960g PE=4 SV=2) HSP 1 Score: 74.3 bits (181), Expect = 8.7e-11 Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|700190210|gb|KGN45443.1| (hypothetical protein Csa_7G448050 [Cucumis sativus]) HSP 1 Score: 126.3 bits (316), Expect = 2.8e-26 Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 1
BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|590680759|ref|XP_007040949.1| (Senescence-associated gene 21, putative [Theobroma cacao]) HSP 1 Score: 81.6 bits (200), Expect = 7.8e-13 Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|590621323|ref|XP_007024758.1| (Senescence-associated gene 21, putative [Theobroma cacao]) HSP 1 Score: 79.3 bits (194), Expect = 3.9e-12 Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1
BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|661897831|emb|CDO97798.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11 Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 1
BLAST of CmaCh17G006530 vs. NCBI nr
Match: gi|566161294|ref|XP_002303328.2| (hypothetical protein POPTR_0003s06960g [Populus trichocarpa]) HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10 Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |