CSPI07G22100 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G22100
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionABA-responsive LEA-like protein
LocationChr7 : 18770060 .. 18770879 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGTTCTTTCCATTCATAGCCAAATATAGAGAAGGAAGACTTCCTGTTTCCCTTTCAACATTCTTCTTCTTTAAGACATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGTCGATCCTTCTCGAGCTGGTTTTATGTATTTAATTATCGGTTCCATTCTTTGTGTGTGTTTCTTTCATGTTCTTTTCTAATTTAGCAATGTAATGGCAGGCGAATGAGCTCTTTGGTTGCATCTGAGCAACTTAAGGCACAAACAACTGCATCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACGGGCGGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAAAACAGCAAGTGAAAAGCTTCATTTATGTGCAAGAACAAAAGTTCCACCTTTATCCATCTTATCCATGTTACTAAATAACACCTACTGCAAAAACTATTCTAAACTACTTTTCTCTCTCTAATCTGTCACTTCTATCAACTTAAAGTCTCATCTGAATCCTCTAAAGTTCAATGGTGTTGATTTCGACCGATGAAAGAAGGGAATCCGAATCTCATCAAGTTTATCAAAGAAAGCAAATCGCCAGATCATAGTAGTTGCAACAAGTCAAGAATGATGAGTTGGCCTACACAAATTAGTAAATACGTACAATTATGGACGAACATCTCAATAGATATTTATTCTATGATTTCTTTTATTAAA

mRNA sequence

ATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGCGAATGAGCTCTTTGGTTGCATCTGAGCAACTTAAGGCACAAACAACTGCATCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACGGGCGGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAA

Coding sequence (CDS)

ATGGCTAAGGTTACTGGAAATAGTCTTTACTTTATAAGGCGAATGAGCTCTTTGGTTGCATCTGAGCAACTTAAGGCACAAACAACTGCATCAATGGTGGTTAGGAAGGTGAAGGCAGCTGTGGAGACGGGCGGTTATGATAATGAGGTAGTTGAACAGAAGAAGACGTTTTGGATGAAAGATCCTAAGAGTGGAAACTGGATTCCCGAGAATCATTTTGAAGAGATGGATGTGGTGGAATTGAGGGAGAAACTGCTGGCTAAACCTAAGAAGCTGCTCTAA
Homology
[Close]
BLAST of CSPI07G22100 vs. TrEMBL
Match: A0A0A0K7L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.6e-43
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MAKVTGNSLYFIRRMSS VASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 94
          DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 93

[Close]
BLAST of CSPI07G22100 vs. TrEMBL
Match: A0A061G6G1_THECC (Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_016756 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-13
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MA+++  S   + R S  VA+E +K Q  AS++        E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          DPK+GNWIPENHF ++DV ELREK L+K +K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

[Close]
BLAST of CSPI07G22100 vs. TrEMBL
Match: A0A061GBY1_THECC (Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_029240 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.2e-13
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MA+++  S   + R S  VA+E +K Q  AS+         E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVTRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          DPK+GNWIPENHF ++DV ELREK L+K +K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

[Close]
BLAST of CSPI07G22100 vs. TrEMBL
Match: A0A068TR10_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021704001 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-11
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 5  TGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQ---KKTFWMKD 64
          +  ++ F+RR  + VA E +KAQ  AS++ +  + +        E+V Q   ++ FWMKD
Sbjct: 7  SNGAVLFLRRAYT-VAVENVKAQPAASVMRKVAEPSTSNIDVGKELVVQGAKREVFWMKD 66

Query: 65 PKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          PK+GNWIPENHF E+D  ELREK L+K  K
Sbjct: 67 PKTGNWIPENHFNEVDAAELREKFLSKAPK 95

[Close]
BLAST of CSPI07G22100 vs. TrEMBL
Match: F6HXN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00410 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1 

Query: 1  MAKVTGNS-LYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWM 60
          MAKV   S L F  R S   A+E    Q  AS V + + +   +        +QK++FWM
Sbjct: 1  MAKVPIKSFLLFCNRRSYAAAAETAVVQPVASAVRKAMDSTTTSDSKTEAAAQQKESFWM 60

Query: 61 KDPKSGNWIPENHFEEMDVVELREKLLAK 89
          KDPK+GNWIPE HF++ DVV LREK L +
Sbjct: 61 KDPKTGNWIPEAHFDDTDVVALREKFLPR 89

[Close]
BLAST of CSPI07G22100 vs. NCBI nr
Match: gi|700190210|gb|KGN45443.1| (hypothetical protein Csa_7G448050 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 9.5e-43
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MAKVTGNSLYFIRRMSS VASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 94
          DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL
Sbjct: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKKLL 93

[Close]
BLAST of CSPI07G22100 vs. NCBI nr
Match: gi|590680759|ref|XP_007040949.1| (Senescence-associated gene 21, putative [Theobroma cacao])

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MA+++  S   + R S  VA+E +K Q  AS++        E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVMRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          DPK+GNWIPENHF ++DV ELREK L+K +K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

[Close]
BLAST of CSPI07G22100 vs. NCBI nr
Match: gi|590621323|ref|XP_007024758.1| (Senescence-associated gene 21, putative [Theobroma cacao])

HSP 1 Score: 82.0 bits (201), Expect = 6.0e-13
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MA+++  S   + R S  VA+E +K Q  AS+         E       + EQK+TFWM+
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVTRNATDLRAEV------LAEQKETFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          DPK+GNWIPENHF ++DV ELREK L+K +K
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

[Close]
BLAST of CSPI07G22100 vs. NCBI nr
Match: gi|661897831|emb|CDO97798.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-11
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 

Query: 5  TGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQ---KKTFWMKD 64
          +  ++ F+RR  + VA E +KAQ  AS++ +  + +        E+V Q   ++ FWMKD
Sbjct: 7  SNGAVLFLRRAYT-VAVENVKAQPAASVMRKVAEPSTSNIDVGKELVVQGAKREVFWMKD 66

Query: 65 PKSGNWIPENHFEEMDVVELREKLLAKPKK 92
          PK+GNWIPENHF E+D  ELREK L+K  K
Sbjct: 67 PKTGNWIPENHFNEVDAAELREKFLSKAPK 95

[Close]
BLAST of CSPI07G22100 vs. NCBI nr
Match: gi|823232824|ref|XP_012449087.1| (PREDICTED: uncharacterized protein LOC105772348 isoform X3 [Gossypium raimondii])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 1  MAKVTGNSLYFIRRMSSLVASEQLKAQTTASMVVRKVKAAVETGGYDNEVVEQKKTFWMK 60
          MA+ +  +   + R S  V +E++K Q  AS  +R     V+   +D E    K+ FWM+
Sbjct: 1  MAQASIKNFQLLSRRSYAVGAEKMKMQAVASEALR-----VQVLAHDKE----KEAFWMR 60

Query: 61 DPKSGNWIPENHFEEMDVVELREKLLAK 89
          DPK+GNWIPENHF ++DV ELREKLL++
Sbjct: 61 DPKTGNWIPENHFGDIDVAELREKLLSR 79

The following BLAST results are available for this feature:
BLAST of CSPI07G22100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G22100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7L4_CUCSA6.6e-4398.92Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448050 PE=4 SV=1[more]
A0A061G6G1_THECC3.2e-1346.15Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_016756 PE=4 SV... [more]
A0A061GBY1_THECC4.2e-1346.15Senescence-associated gene 21, putative OS=Theobroma cacao GN=TCM_029240 PE=4 SV... [more]
A0A068TR10_COFCA6.7e-1144.44Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021704001 PE=4 SV=1[more]
F6HXN7_VITVI1.9e-1044.94Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00410 PE=4 SV=... [more]
BLAST of CSPI07G22100 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI07G22100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190210|gb|KGN45443.1|9.5e-4398.92hypothetical protein Csa_7G448050 [Cucumis sativus][more]
gi|590680759|ref|XP_007040949.1|4.6e-1346.15Senescence-associated gene 21, putative [Theobroma cacao][more]
gi|590621323|ref|XP_007024758.1|6.0e-1346.15Senescence-associated gene 21, putative [Theobroma cacao][more]
gi|661897831|emb|CDO97798.1|9.5e-1144.44unnamed protein product [Coffea canephora][more]
gi|823232824|ref|XP_012449087.1|1.2e-1044.32PREDICTED: uncharacterized protein LOC105772348 isoform X3 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G22100.1CSPI07G22100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA5-typePFAMPF03242LEA_3coord: 13..86
score: 2.7
NoneNo IPR availablePANTHERPTHR33509FAMILY NOT NAMEDcoord: 1..93
score: 4.6
NoneNo IPR availablePANTHERPTHR33509:SF2SUBFAMILY NOT NAMEDcoord: 1..93
score: 4.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G22100Cla015510Watermelon (97103) v1cpiwmB585
CSPI07G22100Csa7G448050Cucumber (Chinese Long) v2cpicuB354
CSPI07G22100MELO3C024311Melon (DHL92) v3.5.1cpimeB525
CSPI07G22100ClCG09G001340Watermelon (Charleston Gray)cpiwcgB553
CSPI07G22100Lsi02G028590Bottle gourd (USVL1VR-Ls)cpilsiB517
CSPI07G22100MELO3C024311.2Melon (DHL92) v3.6.1cpimedB512
CSPI07G22100CsaV3_7G033990Cucumber (Chinese Long) v3cpicucB414
CSPI07G22100Cla97C09G163420Watermelon (97103) v2cpiwmbB596
CSPI07G22100Cucsa.359830Cucumber (Gy14) v1cgycpiB535
CSPI07G22100CmaCh17G006530Cucurbita maxima (Rimu)cmacpiB387
CSPI07G22100CmoCh17G006340Cucurbita moschata (Rifu)cmocpiB376
CSPI07G22100CsGy7G020410Cucumber (Gy14) v2cgybcpiB331
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G22100Wax gourdcpiwgoB664
CSPI07G22100Wax gourdcpiwgoB702
CSPI07G22100Wild cucumber (PI 183967)cpicpiB146
CSPI07G22100Cucumber (Gy14) v1cgycpiB222
CSPI07G22100Cucurbita maxima (Rimu)cmacpiB278
CSPI07G22100Cucurbita maxima (Rimu)cmacpiB939
CSPI07G22100Cucurbita moschata (Rifu)cmocpiB269
CSPI07G22100Cucurbita moschata (Rifu)cmocpiB918
CSPI07G22100Cucumber (Chinese Long) v2cpicuB343
CSPI07G22100Melon (DHL92) v3.5.1cpimeB562
CSPI07G22100Watermelon (Charleston Gray)cpiwcgB595
CSPI07G22100Watermelon (97103) v1cpiwmB606
CSPI07G22100Cucurbita pepo (Zucchini)cpecpiB158
CSPI07G22100Cucurbita pepo (Zucchini)cpecpiB337
CSPI07G22100Cucurbita pepo (Zucchini)cpecpiB638
CSPI07G22100Bottle gourd (USVL1VR-Ls)cpilsiB547
CSPI07G22100Melon (DHL92) v3.6.1cpimedB548
CSPI07G22100Cucumber (Gy14) v2cgybcpiB155
CSPI07G22100Silver-seed gourdcarcpiB0136
CSPI07G22100Silver-seed gourdcarcpiB0638
CSPI07G22100Silver-seed gourdcarcpiB0805
CSPI07G22100Cucumber (Chinese Long) v3cpicucB398
CSPI07G22100Watermelon (97103) v2cpiwmbB576