CmaCh17G005800 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G005800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Vesicle transport protein, Got1/SFT2-like
Location	Cma_Chr17 : 4805885 .. 4810678 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGTCTTCTCTGTATTGGTTGGTTTTCAAGAAATTTGAGAATACTAGTGCTCTTGGTTCAGATCTGCCATATAAAACAGTTAATAGGTGCATCTTTTTTCAAATGCAGAAGTTGGACTTGGGCTGATTGGTTTTGGCTTCTTTTTCACATTTTTGGGTGTAATCCTTTTCTTTGACAGGGGATTGCTTGCTTTAGGAAATGTAAGTCATTTCCAAAGTTCGATGTTGCTTTCTGTATTTATCAGGACCCTATTGTGCCCAACTTACCTAATGCTTTTGTTATACATTGTCCTCTTTTCTTTTATTGTACGTATTTTATCAGATATTTTTGTTAATTGGAGTGGGACTTTTACTTGGTTGGCGTTCTACATGGAATCTTTTTACCAACCGAGCAAATTACAAGGTACAACAAAGTACTTATTATGCCCGGAGGAGGTTTGGTCCCTTACTAGGTTCCATGCATCTCTTAGGGCTCCGTACTTGCATTTATACCTTAGGTTTTGTTTTTGTTAGATTTGCCTTTTCTGTTTTAGTTTGGTTCGTTTTTGTGGTTGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTCGTTTAATGTCCCTGAATTCTTTAATACCTTCTCAACGAAAGCTTTGTTCCATTGAAAAAAATGACGAAGTACTTATCATGCCAGATTTAAAATTGGTTATACATTTTTTATCTAGTTTAGAAGATATTTCGAGGATAGAATGATAGGATTAAAAGATAGTGGTATCAGCCATTGTTAGTTTACTGCAAATGTGGATCATGTAGATTTCTAGTAAATAGTGTGCCAAATAAATTAGATGAGGCATTCAAAAGCCTATGAATTCTGAAATTCTTTCTAGTGCTTCCCTCATTGATCATGAAATCATTTTTGTGTACACAAATGGAAGGATTTCGTCAAAGTTGAATAAGTGGATAAAGGGTGTATTTACATAAATCAGCATTTATGTGAATGTGCATTTATATATGTACGGATATCTGTTTTTGTAAGGATAACTACTTCATTTTCCGATGATGCTTCTCAAGGGGATCACACCTCCAGAAATAACATGATTTCCAAGTTAAATAGCAATATATATAATATTCTTTTTTTTTTTTTCTGTTTTTGATAAGATATTTAGGGATATATATGTACACATAATTCGAGTGAAGGCTGATTTTACTAGATTCTGGCAGCCATGGATGGAAAGAACTAGGTCAACTTCCAAAAATCTAGATAGAGATAGCTTAACTATCCCAGGATGAAGATTGATAATTCTATTTCATTATTTGTCAACTTTCTTTTTATTTAAGTTACCCCATCTTTAATCATTATCAGTAATTTTGCAATCTCTCGACTTTCAGATTAGATCCTTTTTATATCCTTTCATTTTTTTTTATAGGAATTGTCTGCGCAACCTTTGGTGTCAGGAGACTAAATTTTAAAGATTAAAGAATAAAAATAGTCTTATATGTTGGAAATGTCATGGACTTGAACTATCTTTTTTAATTTTCAGGGTTCTGCATCCTTTCTTCTTGGTCTCTTCTTCATTTTTGTTCGCTGGCCCATAATCGGCATACTGTTGGAGATATGTGGCTGTTTTGTTCTCTTTGGGTTAGTTTCTCATCTAAATTTGAAACTATGAGCTTAATATCAATAATATCTCTCTTACACCAGATGTCTCTAATGTAGGGGTTTCTGGCCCTCAATTAAAGGCTTCTTGTACCAAATTCCAGTTCTTGGGTGGATACTTCCATATCCCATCATGGTATGGCTTAGTTACTTTTGTTCATATGCCTCTTAGATTTATTTTCATGTGTAATGTCTCCTAGAAAATGATTTTGTAGCATTATTCATTCTAGGTCAAATAGTGGCCACTACTAGAGGTAACGTTATGTACTTCTTCCCCTTACGGTTGAGCTGTGTAGTGTTTAAATAAATTTGGTTTCTTGAAATTAACCTGTGGTGGTTTGTTTGTTTGTTTGTTTGTTTTTTTCGTACTTAAGAGTTATTTGCTAAACATACCATGTTCAACGGCCATTTGTGACTCACTGCCCAGATGAGGTTAAGAAATTTTGTAATTTGCTGCGAAATTATGGAAGGAGAAGTTCAATATTTTCCTTCTTTTAATGATTTAAAACAATTTTTGTCAGAGATCTCCCAACTTCTTTTAATTTAGATTGTATTTTTGTCATTGGGGTCTAATGATTAGTCGAAGATATTTTTCGATATTTGGTATTCAATAAAGTCTTGATATTTAATATTTCAGTTAGCTCAATAGATGTTCCCAAATAAGTATCAGATTCATGGCTGCTTGATCGTATTGAAGTGCCTTTACTACTATCTCCAACCCTTCGAGAAAATTTTGTAGGGTCTTATTATTTCTTTGTTCGATATTAAACAATTATCGCAAAGGTCAACACCACTCATTAGGTGTTGGTATTTAAAGATTTTTGCTACTATTTTTTTTTATTTCCTATTTAAAGTTCTGTTTTTTTGACACAATTTTATTGCAGTTGTTAAAATGTCTCTTTTATATAGCTGTCTTTTGTATCAGACTCTTTTTTATTTTGCTTTATTTTTATTTTTTTATTGTCCATTTGTTTACATCTGTTATAAAAGAAAGTGTGTTTTTTAAATAAGTATGAATAAAACCAAAAGATAAGAAAAGGTACGAAATGATCAAATCCTTAACTCTACTGGAATTTATAGAAAGATGATCCAAGCCTGCCACTGATTAAGGAAAAAAAAAATCAACTGAAAAAAAAAGAGAAGAAAATTTAGAATGAGGCAAGTAAAGATGAGTTAAAATATGTATTCAGAGCGGAAGTCCACAAGGACACTTTTCTTTTTCTCCAGGATTTTTTTGCTTTAGACAGAGAAATCTCCAATGCATTTTCTCTAATTGTCAAGTAGGCACACAGACTTTAAAGTAGTGAGCTTACAGGTCTCCTTGACATGTCTATTTTGGTCCAGTCTTCAACCTGTGTAAAGGGTGTTTCCTCTGTTCAATGTCCCACTTCAAAAATACTCATTAGTTTGCTTTTACCTCAATATCAGATTAAATTTTTTGACATCTGAAGAAATGGGGATATTGTCTATTGTTGTGGCCTTTGGTTCACTTTGTTAACAATTTGAATTACTTTGGCCCTATTTGATATTCCAAGTTTGTTTCTTTTTTTCTATTTTGAAGATTAAGCTGATTTATTTATCTCCCTGTTATTTTCTCTTTTTACGCTCCTTTTGAAGTCTTCGCGAAATTATAAAAGTGCATATCATATTGTTTTAACTTTTAAAATTTAGCTTTGATTGTTAAAGTAGTTTAAGACCGTAGTACAAAAGTGCAAGTAACATATAGAATATATGACTGGAGTCATTATCAAACAGATTGGCTCCCAGATTTTCTGATATATAATTTCTTTCAACAATTATTGTTGGTCTAGCTCTAAGGCACTGAATTGATTATTGCAGATTCTCGAAAGTCTGTGGAGAGGCTCTCGTTAATCACTTCAAATCTGTAAGCGTATGTTCAAATGATAGTTGACAACGAACTAATCCAATTGTAATTAGATTTCATCTTCAGATGCTGCATTTGAATGGAAGATCCTGAAGGTTAGTACATTGATTCTCAGATTCTTTAACGCTGAAAAAAAACACAGTGAAGCAGCAGATTCATAATATAGCTTTTGCATGTTGTTTGGAACTTCTTACATGTGTTATACGTGCACTTTACATTTTTCTTTTGTGCTGAAGACTGGAACTGAGCATGAACATTAGCTCTCTCCCTTGACCTTTTAATCATTCTTTTTTTTATTTTTGGCTCATTGTTTCCAACTATCTTGTACCAAATCATATTCTTAGAACATTCTTCCAGTTATTCATATGGCTGGCTGTTGGTTATATTGTCTTTAAGGTTATTACTTATCCCTCTTGATGATGCTGTTTTTGTTGAAATATTTTTGGGGTTTCATTGGATTAACAGGTGCTGGTGTTTGGTTGTGTTCTTTATGAAATGAATTTGTACCTTTCTTTTGATGAAGTTGTGTTAAAAGTTCACATTGGCATTGATCTTGGTTGAGAAAATTTTGATGGTAGTTGGCTCAACAAGGCTATCCTATACATTAAAAAGCTAATAAATAAGATTTTGAGACTGGGATGAAGATTCGAACCTAGAACCTAAGTGATTTGAATGGAACATCACAAACCCTTAACTACCGCAGCTCTTGGGAGGCAAGAATAATCATGACCAACATTAATAACTATAAGGTTGGAGAAGTGCTTTAGTTTTGCATTTATTGTTGAACCCCCCAAAAAAAGTCGTGTGGTTTTGGGTTTTAATGTATGCAGCTGCAAATTGTGGGACCAAAATTGAAGTGTAGAAGCAACATCCTTGTGGTTGAATGCAATCAAGTG

mRNA sequence

ATGGAATGTCTTCTCTGTATTGAAGTTGGACTTGGGCTGATTGGTTTTGGCTTCTTTTTCACATTTTTGGGTGTAATCCTTTTCTTTGACAGGGGATTGCTTGCTTTAGGAAATATATTTTTGTTAATTGGAGTGGGACTTTTACTTGGTTGGCGTTCTACATGGAATCTTTTTACCAACCGAGCAAATTACAAGGGTTCTGCATCCTTTCTTCTTGGTCTCTTCTTCATTTTTGTTCGCTGGCCCATAATCGGCATACTGTTGGAGATATGTGGCTGTTTTGTTCTCTTTGGGGGTTTCTGGCCCTCAATTAAAGGCTTCTTGTACCAAATTCCAGTTCTTGGGTGGATACTTCCATATCCCATCATGATTCTCGAAAGTCTGTGGAGAGGCTCTCGTTAATCACTTCAAATCTGTAAGCGTATGTTCAAATGATAGTTGACAACGAACTAATCCAATTGTAATTAGATTTCATCTTCAGATGCTGCATTTGAATGGAAGATCCTGAAGCTGCAAATTGTGGGACCAAAATTGAAGTGTAGAAGCAACATCCTTGTGGTTGAATGCAATCAAGTG

Coding sequence (CDS)

ATGGAATGTCTTCTCTGTATTGAAGTTGGACTTGGGCTGATTGGTTTTGGCTTCTTTTTCACATTTTTGGGTGTAATCCTTTTCTTTGACAGGGGATTGCTTGCTTTAGGAAATATATTTTTGTTAATTGGAGTGGGACTTTTACTTGGTTGGCGTTCTACATGGAATCTTTTTACCAACCGAGCAAATTACAAGGGTTCTGCATCCTTTCTTCTTGGTCTCTTCTTCATTTTTGTTCGCTGGCCCATAATCGGCATACTGTTGGAGATATGTGGCTGTTTTGTTCTCTTTGGGGGTTTCTGGCCCTCAATTAAAGGCTTCTTGTACCAAATTCCAGTTCTTGGGTGGATACTTCCATATCCCATCATGATTCTCGAAAGTCTGTGGAGAGGCTCTCGTTAA

Protein sequence

MECLLCIEVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGSASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILESLWRGSR

Homology

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BLAST of CmaCh17G005800 vs. Swiss-Prot
Match: GOT1B_MOUSE (Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-22
Identity = 51/114 (44.74%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++G+GL GFG FF F G+ILFFD+ LLA+GN+  + G+  ++G   T+  F  R   K +
Sbjct: 9   KIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQRHKVKAT 68

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYP 122
             FL G+F + + WP+IG++ EI G F+LF GF+P + GF+ ++PVLG +L  P
Sbjct: 69  GFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122

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BLAST of CmaCh17G005800 vs. Swiss-Prot
Match: GOT1B_BOVIN (Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-22
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++G+GL GFG FF F G+ILFFD+ LLA+GN+  + G+  ++G   T+  F  +   K +
Sbjct: 9   KIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKAT 68

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYP 122
             FL G+F + + WP+IG++ EI G F+LF GF+P + GF+ ++PVLG +L  P
Sbjct: 69  GFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122

[Close]

BLAST of CmaCh17G005800 vs. Swiss-Prot
Match: GOT1B_HUMAN (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-22
Identity = 50/114 (43.86%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++G+GL GFG FF F G+ILFFD+ LLA+GN+  + G+  ++G   T+  F  +   K +
Sbjct: 9   KIGMGLTGFGVFFLFFGMILFFDKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKAT 68

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYP 122
             FL G+F + + WP+IG++ EI G F+LF GF+P + GF+ ++PVLG +L  P
Sbjct: 69  GFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSLLNLP 122

[Close]

BLAST of CmaCh17G005800 vs. Swiss-Prot
Match: GOT1A_MOUSE (Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-18
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++G+G+ GFG FF   G++L+FD  LLA GN+  L G+ L++G R T+  F  R   KG+
Sbjct: 9   KIGVGITGFGVFFILFGILLYFDSVLLAFGNLLFLTGLSLIIGLRRTFAFFFQRHKLKGT 68

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFL---YQIPVL 115
           + FL G+  + +RWP++G+LLE  G   LF GF+P + GFL   + IP L
Sbjct: 69  SFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFL 118

[Close]

BLAST of CmaCh17G005800 vs. Swiss-Prot
Match: GOT1A_BOVIN (Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-17
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++G+G  GFG FF   G++L+FD  LLA GN+  L G+ L++G R T++ F  R  +KG+
Sbjct: 9   KIGVGTTGFGIFFILFGMLLYFDSVLLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGT 68

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFL 109
           + FL G+  + +RWP++G+ LE  G F LF GF+P   GFL
Sbjct: 69  SFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGFL 109

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BLAST of CmaCh17G005800 vs. TrEMBL
Match: A0A0A0KAR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G023390 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.4e-60
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 9   VGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGSA 68
           VGLGLIGFGFFFTFL VILFFDRGLLALGN+F LIGV LLLGW STWNLFT+RANYKGSA
Sbjct: 11  VGLGLIGFGFFFTFLAVILFFDRGLLALGNMFWLIGVALLLGWHSTWNLFTSRANYKGSA 70

Query: 69  SFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILESL 128
           SFLLGLFFIFVRWPIIGILLEICGCF+LFGGFWPSIKGFLYQIPVLGW+LPYPIMILESL
Sbjct: 71  SFLLGLFFIFVRWPIIGILLEICGCFLLFGGFWPSIKGFLYQIPVLGWVLPYPIMILESL 130

Query: 129 WRGS 133
           WRGS
Sbjct: 131 WRGS 134

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BLAST of CmaCh17G005800 vs. TrEMBL
Match: B9IAD7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14910g PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 7.4e-48
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG FFTFLG +LFFDRGLLALGNIF L GV +LLGWRSTW LFTNR NYKGS
Sbjct: 10  KIGLGLIGFGIFFTFLGALLFFDRGLLALGNIFWLSGVAILLGWRSTWKLFTNRENYKGS 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
             FLLGLFFIFVRWP++GI+ EI  C  LFGGFWPS+K FLYQIPV+GWI+ YPI +L+ 
Sbjct: 70  VCFLLGLFFIFVRWPVVGIIFEIYSCIALFGGFWPSVKVFLYQIPVVGWIIQYPITLLDY 129

Query: 128 LWRGS 133
           L RGS
Sbjct: 130 LRRGS 134

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BLAST of CmaCh17G005800 vs. TrEMBL
Match: A0A059AW55_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00434 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 9.6e-48
Identity = 95/125 (76.00%), Postives = 108/125 (86.40%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG FF+FLGV+LFFDRGLLALGNI  L GV  LLGW STW +F+NRANYKGS
Sbjct: 10  KIGLGLIGFGIFFSFLGVLLFFDRGLLALGNILWLAGVAFLLGWYSTWKIFSNRANYKGS 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
           ASFLLGLFFIFVRWPI+GI+ E+ GC VLFGGFWPS+K FLYQIPVLGWI+ YPI++L  
Sbjct: 70  ASFLLGLFFIFVRWPILGIIFELYGCIVLFGGFWPSVKVFLYQIPVLGWIIQYPILLLGR 129

Query: 128 LWRGS 133
           L  GS
Sbjct: 130 LGGGS 134

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BLAST of CmaCh17G005800 vs. TrEMBL
Match: A0A061EKK3_THECC (Got1/Sft2-like vescicle transport protein family OS=Theobroma cacao GN=TCM_020074 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-47
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG FF+FLGVILFFDRGLLALGNIF L GV +L+GW ST  LFTNR NYKGS
Sbjct: 79  KIGLGLIGFGIFFSFLGVILFFDRGLLALGNIFCLAGVAILIGWYSTLQLFTNRKNYKGS 138

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
           ASFLLGLFF+FVRWPI+GI+LEI GC VLFGGFWPS++ FL QIPV GW++ YP+MIL+ 
Sbjct: 139 ASFLLGLFFLFVRWPIVGIILEIYGCIVLFGGFWPSVRVFLCQIPVFGWVIQYPVMILDR 198

Query: 128 LWRGS 133
           L RGS
Sbjct: 199 LRRGS 203

[Close]

BLAST of CmaCh17G005800 vs. TrEMBL
Match: B9SYF6_RICCO (Vesicle transport protein GOT1B, putative OS=Ricinus communis GN=RCOM_0119500 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.1e-47
Identity = 93/124 (75.00%), Postives = 108/124 (87.10%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG  F+FLGV+LFFDRGLLALGNIF L GV +LLGW STWNLFTNRANYKG+
Sbjct: 10  KIGLGLIGFGILFSFLGVLLFFDRGLLALGNIFWLTGVAILLGWHSTWNLFTNRANYKGT 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
            SFLLGLFFIFVRWPI+GI+LEI GC  LFGGFWP++K FLYQIPV+GWI+ YP+++L  
Sbjct: 70  ISFLLGLFFIFVRWPIVGIVLEIYGCIALFGGFWPTVKVFLYQIPVVGWIIQYPVLLLGR 129

Query: 128 LWRG 132
           L  G
Sbjct: 130 LRGG 133

[Close]

BLAST of CmaCh17G005800 vs. TAIR10
Match: AT1G05785.1 (AT1G05785.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 184.1 bits (466), Expect = 5.6e-47
Identity = 90/126 (71.43%), Postives = 106/126 (84.13%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           +VGLGLIGFG  FTFLGVIL+FDRGLLALGN+F LIGVGLLLGW+STW +FTN  N +G+
Sbjct: 10  KVGLGLIGFGLSFTFLGVILYFDRGLLALGNLFWLIGVGLLLGWQSTWRVFTNVNNLRGT 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
             F+LGLF IFVRWPIIGI+LEI G  VLFGGFW ++K FL QIP +GWI+ YP+M+LE 
Sbjct: 70  ICFVLGLFLIFVRWPIIGIILEIYGVIVLFGGFWSTVKAFLSQIPFVGWIIQYPLMVLEQ 129

Query: 128 LWRGSR 134
           L RG+R
Sbjct: 130 LVRGAR 135

[Close]

BLAST of CmaCh17G005800 vs. TAIR10
Match: AT3G49420.1 (AT3G49420.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-32
Identity = 66/127 (51.97%), Postives = 89/127 (70.08%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGL GFG FF+FLG++  FD+GLLA+GNI  + GV L +G++ST   F  R NYKG+
Sbjct: 11  KIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGT 70

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYP-IMILE 127
            SF +G FF+ + WPI+G++LE  G FVLF GFWP++  F  +IPVLGWI+  P I    
Sbjct: 71  ISFGVGFFFVIIGWPILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWIIQQPYIRSFF 130

Query: 128 SLWRGSR 134
             +RG R
Sbjct: 131 DKYRGKR 137

[Close]

BLAST of CmaCh17G005800 vs. TAIR10
Match: AT5G01430.1 (AT5G01430.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-32
Identity = 66/127 (51.97%), Postives = 89/127 (70.08%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGL GFG FF+FLG++  FD+GLLA+GNI  + GV L +G++ST   F  R NYKG+
Sbjct: 11  KIGLGLTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKSTMQFFMKRQNYKGT 70

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYP-IMILE 127
            SF +G FF+ + WPI+G++LE  G FVLF GFWP++  F  +IPVLGWI+  P I    
Sbjct: 71  ISFGVGFFFVIIGWPILGMMLETYGFFVLFSGFWPTLAVFAQKIPVLGWIIQQPYIRSFF 130

Query: 128 SLWRGSR 134
             +RG R
Sbjct: 131 DKYRGKR 137

[Close]

BLAST of CmaCh17G005800 vs. TAIR10
Match: AT3G03180.1 (AT3G03180.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-29
Identity = 67/127 (52.76%), Postives = 83/127 (65.35%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGL GFG FFTFLGVI  FD+GL+A+GNI  L GV L +G       FT R N+KG+
Sbjct: 11  KIGLGLTGFGVFFTFLGVIFVFDKGLIAMGNILFLAGVTLTIGINPAIQFFTKRQNFKGT 70

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYP-IMILE 127
            SF LG   +   WPI G+LLE  G  VLF GFWP++  FL +IP+LGW+L  P I  L 
Sbjct: 71  ISFGLGFLLVVFGWPIFGLLLESYGFLVLFSGFWPTLAVFLQRIPLLGWLLQQPYIRSLL 130

Query: 128 SLWRGSR 134
             +RG R
Sbjct: 131 DRYRGRR 137

[Close]

BLAST of CmaCh17G005800 vs. NCBI nr
Match: gi|659089657|ref|XP_008445629.1| (PREDICTED: vesicle transport protein GOT1B [Cucumis melo])

HSP 1 Score: 239.2 bits (609), Expect = 4.1e-60
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 9   VGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGSA 68
           VGLGLIGFGFFFTFL VILFFDRGLLALGNIF LIGV LLLGW STWNLFT+RANYKGSA
Sbjct: 11  VGLGLIGFGFFFTFLAVILFFDRGLLALGNIFWLIGVALLLGWHSTWNLFTSRANYKGSA 70

Query: 69  SFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILESL 128
           SFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPI+ILESL
Sbjct: 71  SFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIVILESL 130

Query: 129 WRGS 133
           WRGS
Sbjct: 131 WRGS 134

[Close]

BLAST of CmaCh17G005800 vs. NCBI nr
Match: gi|449441157|ref|XP_004138350.1| (PREDICTED: vesicle transport protein GOT1B [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 9.2e-60
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 1


Query: 9   VGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGSA 68
           VGLGLIGFGFFFTFL VILFFDRGLLALGN+F LIGV LLLGW STWNLFT+RANYKGSA
Sbjct: 11  VGLGLIGFGFFFTFLAVILFFDRGLLALGNMFWLIGVALLLGWHSTWNLFTSRANYKGSA 70

Query: 69  SFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILESL 128
           SFLLGLFFIFVRWPIIGILLEICGCF+LFGGFWPSIKGFLYQIPVLGW+LPYPIMILESL
Sbjct: 71  SFLLGLFFIFVRWPIIGILLEICGCFLLFGGFWPSIKGFLYQIPVLGWVLPYPIMILESL 130

Query: 129 WRGS 133
           WRGS
Sbjct: 131 WRGS 134

[Close]

BLAST of CmaCh17G005800 vs. NCBI nr
Match: gi|802560021|ref|XP_012066244.1| (PREDICTED: vesicle transport protein GOT1B isoform X1 [Jatropha curcas])

HSP 1 Score: 201.1 bits (510), Expect = 1.3e-48
Identity = 95/125 (76.00%), Postives = 110/125 (88.00%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG FFTFLGV+LF DRGLLALGNIF L GV +LLGW+STW LFTNRANYKGS
Sbjct: 10  KIGLGLIGFGIFFTFLGVLLFCDRGLLALGNIFWLTGVAILLGWQSTWKLFTNRANYKGS 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
            SFLLGLFFIFVRWPI+GI+L+I GC  LFGGFWPS+K FLYQIPV+GWI+ YP+++L+ 
Sbjct: 70  VSFLLGLFFIFVRWPIVGIILQIYGCIALFGGFWPSVKVFLYQIPVIGWIIQYPVLLLDR 129

Query: 128 LWRGS 133
           L  GS
Sbjct: 130 LRGGS 134

[Close]

BLAST of CmaCh17G005800 vs. NCBI nr
Match: gi|743912222|ref|XP_010999983.1| (PREDICTED: vesicle transport protein GOT1B [Populus euphratica])

HSP 1 Score: 199.9 bits (507), Expect = 2.8e-48
Identity = 95/125 (76.00%), Postives = 107/125 (85.60%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG FFTFLG +LFFDRGLLALGNIF L GV +LLGWRSTW LFTNRANYKGS
Sbjct: 10  KIGLGLIGFGIFFTFLGALLFFDRGLLALGNIFWLSGVAILLGWRSTWKLFTNRANYKGS 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
             FLLGLFFIFVRWP++GI+ EI  C  LFGGFWPS+K FLYQIPV+GWI+ YPI +L+ 
Sbjct: 70  VCFLLGLFFIFVRWPVVGIIFEIYSCVALFGGFWPSVKVFLYQIPVVGWIIQYPITLLDH 129

Query: 128 LWRGS 133
           L RGS
Sbjct: 130 LRRGS 134

[Close]

BLAST of CmaCh17G005800 vs. NCBI nr
Match: gi|224131568|ref|XP_002321118.1| (hypothetical protein POPTR_0014s14910g [Populus trichocarpa])

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 1


Query: 8   EVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFLLIGVGLLLGWRSTWNLFTNRANYKGS 67
           ++GLGLIGFG FFTFLG +LFFDRGLLALGNIF L GV +LLGWRSTW LFTNR NYKGS
Sbjct: 10  KIGLGLIGFGIFFTFLGALLFFDRGLLALGNIFWLSGVAILLGWRSTWKLFTNRENYKGS 69

Query: 68  ASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWILPYPIMILES 127
             FLLGLFFIFVRWP++GI+ EI  C  LFGGFWPS+K FLYQIPV+GWI+ YPI +L+ 
Sbjct: 70  VCFLLGLFFIFVRWPVVGIIFEIYSCIALFGGFWPSVKVFLYQIPVVGWIIQYPITLLDY 129

Query: 128 LWRGS 133
           L RGS
Sbjct: 130 LRRGS 134

The following BLAST results are available for this feature:

BLAST of CmaCh17G005800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GOT1B_MOUSE	2.0e-22	44.74	Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=1 SV=1	[more]
GOT1B_BOVIN	4.5e-22	43.86	Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1	[more]
GOT1B_HUMAN	4.5e-22	43.86	Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1	[more]
GOT1A_MOUSE	8.7e-18	43.64	Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1	[more]
GOT1A_BOVIN	1.5e-17	44.55	Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1	[more]

BLAST of CmaCh17G005800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAR8_CUCSA	6.4e-60	93.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G023390 PE=4 SV=1	[more]
B9IAD7_POPTR	7.4e-48	75.20	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s14910g PE=4 SV=1	[more]
A0A059AW55_EUCGR	9.6e-48	76.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00434 PE=4 SV=1	[more]
A0A061EKK3_THECC	1.3e-47	76.00	Got1/Sft2-like vescicle transport protein family OS=Theobroma cacao GN=TCM_02007...	[more]
B9SYF6_RICCO	2.1e-47	75.00	Vesicle transport protein GOT1B, putative OS=Ricinus communis GN=RCOM_0119500 PE...	[more]

BLAST of CmaCh17G005800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05785.1	5.6e-47	71.43	Got1/Sft2-like vescicle transport protein family	[more]
AT3G49420.1	3.0e-32	51.97	Got1/Sft2-like vescicle transport protein family	[more]
AT5G01430.1	3.0e-32	51.97	Got1/Sft2-like vescicle transport protein family	[more]
AT3G03180.1	3.1e-29	52.76	Got1/Sft2-like vescicle transport protein family	[more]

BLAST of CmaCh17G005800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089657\|ref\|XP_008445629.1\|	4.1e-60	95.16	PREDICTED: vesicle transport protein GOT1B [Cucumis melo]	[more]
gi\|449441157\|ref\|XP_004138350.1\|	9.2e-60	93.55	PREDICTED: vesicle transport protein GOT1B [Cucumis sativus]	[more]
gi\|802560021\|ref\|XP_012066244.1\|	1.3e-48	76.00	PREDICTED: vesicle transport protein GOT1B isoform X1 [Jatropha curcas]	[more]
gi\|743912222\|ref\|XP_010999983.1\|	2.8e-48	76.00	PREDICTED: vesicle transport protein GOT1B [Populus euphratica]	[more]
gi\|224131568\|ref\|XP_002321118.1\|	1.1e-47	75.20	hypothetical protein POPTR_0014s14910g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007305	Vesicle_transpt_Got1/SFT2

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005800.1	CmaCh17G005800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 18..112 score: 8.2
None	No IPR available	PANTHER	PTHR21493	CGI-141-RELATED/LIPASE CONTAINING PROTEIN	coord: 9..124 score: 1.6
None	No IPR available	PANTHER	PTHR21493:SF97	GOT1/SFT2-LIKE VESCICLE TRANSPORT PROTEIN	coord: 9..124 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G005800	Csa6G023390	Cucumber (Chinese Long) v2	cmacuB377
CmaCh17G005800	MELO3C011507	Melon (DHL92) v3.5.1	cmameB331
CmaCh17G005800	ClCG08G004020	Watermelon (Charleston Gray)	cmawcgB335
CmaCh17G005800	CSPI06G02940	Wild cucumber (PI 183967)	cmacpiB381
CmaCh17G005800	CmoCh17G005640	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G005800	Lsi08G003290	Bottle gourd (USVL1VR-Ls)	cmalsiB362
CmaCh17G005800	Cp4.1LG12g04960	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G005800	MELO3C011507.2	Melon (DHL92) v3.6.1	cmamedB385
CmaCh17G005800	CsaV3_6G003180	Cucumber (Chinese Long) v3	cmacucB0448
CmaCh17G005800	Cla97C08G147340	Watermelon (97103) v2	cmawmbB385
CmaCh17G005800	Bhi04G001675	Wax gourd	cmawgoB0483
CmaCh17G005800	Carg22620	Silver-seed gourd	carcmaB0302

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G005800	Cucurbita pepo (Zucchini)	cmacpeB390
CmaCh17G005800	Cucumber (Gy14) v2	cgybcmaB760
CmaCh17G005800	Cucumber (Gy14) v2	cgybcmaB757
CmaCh17G005800	Silver-seed gourd	carcmaB0109
CmaCh17G005800	Cucumber (Chinese Long) v3	cmacucB0443
CmaCh17G005800	Cucurbita maxima (Rimu)	cmacmaB386
CmaCh17G005800	Cucumber (Gy14) v1	cgycmaB1000
CmaCh17G005800	Cucumber (Gy14) v1	cgycmaB1002
CmaCh17G005800	Cucurbita moschata (Rifu)	cmacmoB378
CmaCh17G005800	Wild cucumber (PI 183967)	cmacpiB377
CmaCh17G005800	Cucumber (Chinese Long) v2	cmacuB373
CmaCh17G005800	Watermelon (97103) v1	cmawmB337