CmaCh16G012150 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAGTTCAGGGCAGGGAACACCATACAGAATCCTGGAGTTTTTCGCCCCAGATCGGAGAATATAGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCGATGTTAGCAGAGAATATGGTACACCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTGTAGGCCTACTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATTGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCGCCATCCGTTGGAGGAGGGATGTACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGCTAGGGATTGCCCTGGTTTGGCCACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACAGCTAGGTGA ATGGAAAAGTTCAGGGCAGGGAACACCATACAGAATCCTGGAGTTTTTCGCCCCAGATCGGAGAATATAGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCGATGTTAGCAGAGAATATGGTACACCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTGTAGGCCTACTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATTGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCGCCATCCGTTGGAGGAGGGATGTACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGCTAGGGATTGCCCTGGTTTGGCCACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACAGCTAGGTGA ATGGAAAAGTTCAGGGCAGGGAACACCATACAGAATCCTGGAGTTTTTCGCCCCAGATCGGAGAATATAGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCGATGTTAGCAGAGAATATGGTACACCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTGTAGGCCTACTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATTGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCGCCATCCGTTGGAGGAGGGATGTACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGCTAGGGATTGCCCTGGTTTGGCCACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACAGCTAGGTGA MEKFRAGNTIQNPGVFRPRSENIGGGQFVSPIRNSTDVSREYGTPNRGVQYGDHHNSCRPTPSTLHNSRTYCNSCGGLGHSSMNCPSIISSPAPSVGGGMYLNRVSGSSGRDSGECFKCHQTGHWARDCPGLATFPPAYGNSGFTAR
BLAST of CmaCh16G012150 vs. Swiss-Prot
Match: RFA1C_ORYSJ (Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica GN=RPA1C PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.8e-06 Identity = 27/75 (36.00%), Postives = 37/75 (49.33%), Query Frame = 1
BLAST of CmaCh16G012150 vs. TrEMBL
Match: A0A0A0L503_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005560 PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 1.4e-55 Identity = 107/143 (74.83%), Postives = 117/143 (81.82%), Query Frame = 1
BLAST of CmaCh16G012150 vs. TrEMBL
Match: A5AQN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_038295 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 1.0e-26 Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of CmaCh16G012150 vs. TrEMBL
Match: F6I092_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0033g01170 PE=4 SV=1) HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26 Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of CmaCh16G012150 vs. TrEMBL
Match: A0A067E5M0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003281mg PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22 Identity = 61/144 (42.36%), Postives = 80/144 (55.56%), Query Frame = 1
BLAST of CmaCh16G012150 vs. TrEMBL
Match: A0A151THH2_CAJCA (Replication protein A 70 kDa DNA-binding subunit OS=Cajanus cajan GN=KK1_012785 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22 Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
BLAST of CmaCh16G012150 vs. NCBI nr
Match: gi|659095462|ref|XP_008448593.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis melo]) HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55 Identity = 107/143 (74.83%), Postives = 117/143 (81.82%), Query Frame = 1
BLAST of CmaCh16G012150 vs. NCBI nr
Match: gi|449456771|ref|XP_004146122.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Cucumis sativus]) HSP 1 Score: 223.8 bits (569), Expect = 2.0e-55 Identity = 107/143 (74.83%), Postives = 117/143 (81.82%), Query Frame = 1
BLAST of CmaCh16G012150 vs. NCBI nr
Match: gi|147856620|emb|CAN82475.1| (hypothetical protein VITISV_038295 [Vitis vinifera]) HSP 1 Score: 127.9 bits (320), Expect = 1.5e-26 Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of CmaCh16G012150 vs. NCBI nr
Match: gi|225427514|ref|XP_002264009.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Vitis vinifera]) HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26 Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
BLAST of CmaCh16G012150 vs. NCBI nr
Match: gi|296088465|emb|CBI37456.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 127.5 bits (319), Expect = 1.9e-26 Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: None |