CmaCh16G004680 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Photosystem II 10 kDa polypeptide family protein
Location	Cma_Chr16 : 2375720 .. 2377887 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATCTCTCAGATTATCAATCCCCGAGCTCTGTTTTGCGCCATTGCAAATTTTCGAGCCAAAGCAGAAGAAGAAGAAGAAGCTTATCGATTGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTACGGTAAAATTAGCCACCGATTGATGCGATTTTTGGCTCATTGGAGACGATTCTGACTCGTTTTTTGATGTAATGCGTGTAGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGTTGCTAAACAGATTTCTGAATCTCTTCATTCCATCGATGGAATTTCCGTTTTAGTTATCTTATTGGTTACTCTGCAACTTCTAATTTGATACTGTTTTCGAATTTGATTCATTTAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGGTGAACATCATCTTTCTCATTTTCTTTTAGTTTTGTTGGCTCTGATTTTGTTCATAGTTCTCTGATTTGAAAATCAAACTGAATTCAAAGCGTTACTATTCATGTTTAGTTTGTAATTCTTCCACTATCACCGTATCAACAAACCTCATACTTATTGTATTCTCAACTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTAAGTTCTTCCACCACTCTTGAGTCTGCTATCATATTTCTTTAGAATCATTCATAAAATATATACAGTAGACTACAGAATTGAGTTTTACGTTAGCAATTTGAATATGCCTGCTGAATAAATTTATGATTTGAGTATTCAATTTCTGAAATTGTAAGAACATATGCATCTAATCTACTTTCAGTAGACGATACAGGAATTGTACAGAGCAGAAATCATGTTGTGCTGTTTGAAATTGGGTTTTCAATTTCTAATTTTGTTTCATTCAGAATGATCGATTTTCCGTTTTTCATCTTGAATTTCTATCATTGATTTACTTTTGGATATGAACTTTCTTCTTCTTCTTCCTGCCTCAAAAGTTAGGATTTTTTTTTTTTTAAAAAAAAGTTTGATTGCAGCTTATTCAACAACGCGACACCTTTTATCTAATTCAAGCGTACAAAATGAGTTTGATTATTTCGCTCTTAAAATTAATCATCATAGTATTGTAATTGATGTATGTTTATTATGCTCAACAAACATTCTATATATGTTCAATAAGTATCAAACTTGTATTCATTTTGTACGACTAGCGTCTTATACACGTTTATTGTGCAAACACGTATATTTAAATTCAAATGTCTGCACTTCTTAGAGCATAAATGTAATCGTCTAAGTCTATTGCTAGCAGATATTATCCACTTTGGCTCGTTACATATCGCCTTCAGCCTCACGATTTTAAAACGCATCTACTAGAGAGAGGTTCCACACCCTTGTAAAATTATGAAAGGAAGCTCAAAAGCACAAAAAGAATCATATATGCTAGTGGTGGGTTTGAATTGTTACAATAAATCACCACTAGACCCAACTTTAGCTATAGATTATGATAAGTTAACTCCTTTGGTATATATTTAGAGCCCTCTCTTTGATGTAAGTTTGAATAACATCTTAATGCCTCTAAGGGATAGAATTGAAATATGGTGTTGCATTGGGATTAAAGATAAATATATTTATTTGCTGATATTGTGGAGAACATTGAATTTTAGGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAAGCTGGAGGGAAGTTAAAAGTCTGTTCTTTTCACTTTAGTTTTTGTAGCATATTATTATGAACAACATTATTAAGAAATTCTATGTAATTATCTGGACAATTGCATCGTAAATGCTTGGTAAGATAAATTCTTTCTCTTCCCTATATTTTTTTCTTATTGTTCTTTCTTTTATCATTTCTTGACCGAGTAAGTCGGGATGACTTTTGAAAATCGTTCTTTTTGTTCCAATAAGAAAAAAGGTGTCTAAGTCGTTTTTTGTT

mRNA sequence

CACATCTCTCAGATTATCAATCCCCGAGCTCTGTTTTGCGCCATTGCAAATTTTCGAGCCAAAGCAGAAGAAGAAGAAGAAGCTTATCGATTGGAAATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTACGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAAGCTGGAGGGAAGTTAAAAGTCTGTTCTTTTCACTTTAGTTTTTGTAGCATATTATTATGAACAACATTATTAAGAAATTCTATGTAATTATCTGGACAATTGCATCGTAAATGCTTGGTAAGATAAATTCTTTCTCTTCCCTATATTTTTTTCTTATTGTTCTTTCTTTTATCATTTCTTGACCGAGTAAGTCGGGATGACTTTTGAAAATCGTTCTTTTTGTTCCAATAAGAAAAAAGGTGTCTAAGTCGTTTTTTGTT

Coding sequence (CDS)

ATGGCGGCCTCGGTGATGACCTCAGTGAGTCTCAAACCAGCTCCTTTCACCGTCGAGAAAGCGGCGAGAGGTATTCCGTCTCTGGCGAGAAAATCCGGCTTCTTCAAGGTCGAGGCCAGTGGTGGGAAGAAGATTAAGACCGACAAACCCTACGGAATCAATGGATCGATGAATTTGAGGGATGGAGTTGATGCATCGGGAAGGAAGGGCAAGGGAAAGGGAGTCTACCAGTACGTCGACAAGTACGGAGCCAATGTCGATGGCTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAAGTGGTGATGTCTATGTCGGTGGTACTACTGGGTTAGCCATTTGGGCAGTGACCTTGGCCGGTCTTCTTGCTGGAGGTGCTCTTCTTGTGTACAACACCAGTGCTTTGGCGCAGTAA

Protein sequence

MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLAGLLAGGALLVYNTSALAQ

Homology

[Close]

BLAST of CmaCh16G004680 vs. Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.4e-56
Identity = 114/139 (82.01%), Postives = 127/139 (91.37%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM   SLKPAPF+VEK A +G+PSLAR S  F+V+ASG KK+KTDKPYGINGSM+L
Sbjct: 1   MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRK KGKGVYQ+VDKYGANVDGYSPIY+T DWSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            G+LAGGALLV+NTSALAQ
Sbjct: 121 VGILAGGALLVFNTSALAQ 136

[Close]

BLAST of CmaCh16G004680 vs. Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-55
Identity = 114/139 (82.01%), Postives = 126/139 (90.65%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK + +G+PSLAR S  FKV ASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            G+LAGGALLVYNTSALAQ
Sbjct: 121 VGILAGGALLVYNTSALAQ 138

[Close]

BLAST of CmaCh16G004680 vs. Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK + +G+PSL R S  FKV ASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRK KGKGVYQYVDKYGANVDGYSPIY+T +WSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            G+LAGGALLVYNTSALAQ
Sbjct: 121 LGILAGGALLVYNTSALAQ 138

[Close]

BLAST of CmaCh16G004680 vs. Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 114/140 (81.43%), Postives = 124/140 (88.57%), Query Frame = 1


Query: 1   MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVT 120
           LRDGVDASGRKGKG GVY+YVDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALAQ 139
           LAG+LAGGALLVYNTSALAQ
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]

BLAST of CmaCh16G004680 vs. Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-51
Identity = 111/141 (78.72%), Postives = 125/141 (88.65%), Query Frame = 1


Query: 1   MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKS-GFFKVEASGGKKIKTDKPYGINGSM 60
           MAASVM +SV+LKPA FTVEK +ARG+PSL R S   F++ ASG KKIKTDKP+G+NGSM
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 61  NLRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAV 120
           +LRDGVDASGRKGKG GVY++VDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWAV
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 121 TLAGLLAGGALLVYNTSALAQ 139
           TLAG+LAGGALLVYNTSALAQ
Sbjct: 121 TLAGILAGGALLVYNTSALAQ 141

[Close]

BLAST of CmaCh16G004680 vs. TrEMBL
Match: A0A0A0KXH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064020 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+A G+PSLARKS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of CmaCh16G004680 vs. TrEMBL
Match: A0A151SW65_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014449 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.1e-59
Identity = 121/139 (87.05%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFT++K++ RG+PSL+R S  FKV ASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVALKPAPFTLDKSSVRGLPSLSRNSSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTK+WSP+GDVY GGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKEWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
           AGLLAGGALLVYNTSALAQ
Sbjct: 121 AGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CmaCh16G004680 vs. TrEMBL
Match: A8VIE2_PROJU (Chloroplast photosystem II PsbR OS=Prosopis juliflora GN=PsbR PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58
Identity = 121/139 (87.05%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SVSLKPAPFTVEK+A RG+PSL+R S  FKV ASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVSLKPAPFTVEKSAVRGLPSLSRSSSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
            +GVD+SGRKGKGKGVYQ+VDKYG NVDGYSPIY+T+DWSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  VEGVDSSGRKGKGKGVYQFVDKYGTNVDGYSPIYNTEDWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
           AGLLAGGALLVYNTSALAQ
Sbjct: 121 AGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CmaCh16G004680 vs. TrEMBL
Match: V5NAJ9_PHAVU (Chloroplast photosystem II 10 kDa protein OS=Phaseolus vulgaris GN=PHAVU_005G055200g PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.3e-58
Identity = 120/139 (86.33%), Postives = 129/139 (92.81%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEK++ RG+PSL+R S  F+V ASGGKKIKTD PYGI+G MNL
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDTPYGISGGMNL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP+GDVY GGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            GLLAGGALLVYNTSALAQ
Sbjct: 121 LGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CmaCh16G004680 vs. TrEMBL
Match: A0A0B2R4P5_GLYSO (Photosystem II 10 kDa polypeptide, chloroplastic OS=Glycine soja GN=glysoja_011389 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.8e-58
Identity = 119/139 (85.61%), Postives = 129/139 (92.81%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEK++ RG+PSL+R S  F+V ASGGKKIKTDKPYGING M L
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMAL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           R+GVDASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVY GGTTGLAIWAVTL
Sbjct: 61  REGVDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            GLLAGGALLVYNTSALAQ
Sbjct: 121 LGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CmaCh16G004680 vs. TAIR10
Match: AT1G79040.1 (AT1G79040.1 photosystem II subunit R)

HSP 1 Score: 210.3 bits (534), Expect = 7.5e-55
Identity = 114/140 (81.43%), Postives = 124/140 (88.57%), Query Frame = 1


Query: 1   MAASVM-TSVSLKPAPFTVEK-AARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK AARG+PSL R    FK+ ASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVT 120
           LRDGVDASGRKGKG GVY+YVDKYGANVDGYSPIY+  +WS SGDVY GG TGLAIWAVT
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALAQ 139
           LAG+LAGGALLVYNTSALAQ
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]

BLAST of CmaCh16G004680 vs. NCBI nr
Match: gi|659101853|ref|XP_008451826.1| (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 4.2e-63
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DGVDASGRK KGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWAVTLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of CmaCh16G004680 vs. NCBI nr
Match: gi|449460036|ref|XP_004147752.1| (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 9.3e-63
Identity = 127/138 (92.03%), Postives = 132/138 (95.65%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEK+A G+PSLARKS  FKV ASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTLA 120
           DG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSP+GDVYVGGTTGLAIWA TLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALAQ 139
           GLLAGGALLVYNTSAL Q
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of CmaCh16G004680 vs. NCBI nr
Match: gi|1012347833|gb|KYP59024.1| (hypothetical protein KK1_014449 [Cajanus cajan])

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-59
Identity = 121/139 (87.05%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFT++K++ RG+PSL+R S  FKV ASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVALKPAPFTLDKSSVRGLPSLSRNSSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTK+WSP+GDVY GGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKEWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
           AGLLAGGALLVYNTSALAQ
Sbjct: 121 AGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CmaCh16G004680 vs. NCBI nr
Match: gi|593697572|ref|XP_007149259.1| (hypothetical protein PHAVU_005G055200g [Phaseolus vulgaris])

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-58
Identity = 120/139 (86.33%), Postives = 129/139 (92.81%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEK++ RG+PSL+R S  F+V ASGGKKIKTD PYGI+G MNL
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDTPYGISGGMNL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
           RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSP+GDVY GGTTGLAIWAVTL
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
            GLLAGGALLVYNTSALAQ
Sbjct: 121 LGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CmaCh16G004680 vs. NCBI nr
Match: gi|158343304|gb|ABW35320.1| (chloroplast photosystem II PsbR [Prosopis juliflora])

HSP 1 Score: 233.8 bits (595), Expect = 1.8e-58
Identity = 121/139 (87.05%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKAA-RGIPSLARKSGFFKVEASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SVSLKPAPFTVEK+A RG+PSL+R S  FKV ASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVSLKPAPFTVEKSAVRGLPSLSRSSSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGGTTGLAIWAVTL 120
            +GVD+SGRKGKGKGVYQ+VDKYG NVDGYSPIY+T+DWSPSGDVYVGGTTGLAIWAVTL
Sbjct: 61  VEGVDSSGRKGKGKGVYQFVDKYGTNVDGYSPIYNTEDWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALAQ 139
           AGLLAGGALLVYNTSALAQ
Sbjct: 121 AGLLAGGALLVYNTSALAQ 139

The following BLAST results are available for this feature:

BLAST of CmaCh16G004680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBR_TOBAC	6.4e-56	82.01	Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE...	[more]
PSBR_SOLTU	3.2e-55	82.01	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE...	[more]
PSBR_SOLLC	1.2e-54	81.29	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR...	[more]
PSBR_ARATH	1.3e-53	81.43	Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR...	[more]
PSBR_BRACM	1.3e-51	78.72	Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR ...	[more]

BLAST of CmaCh16G004680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXH3_CUCSA	6.4e-63	92.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064020 PE=4 SV=1	[more]
A0A151SW65_CAJCA	1.1e-59	87.05	Uncharacterized protein OS=Cajanus cajan GN=KK1_014449 PE=4 SV=1	[more]
A8VIE2_PROJU	1.3e-58	87.05	Chloroplast photosystem II PsbR OS=Prosopis juliflora GN=PsbR PE=2 SV=1	[more]
V5NAJ9_PHAVU	1.3e-58	86.33	Chloroplast photosystem II 10 kDa protein OS=Phaseolus vulgaris GN=PHAVU_005G055...	[more]
A0A0B2R4P5_GLYSO	4.8e-58	85.61	Photosystem II 10 kDa polypeptide, chloroplastic OS=Glycine soja GN=glysoja_0113...	[more]

BLAST of CmaCh16G004680 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79040.1	7.5e-55	81.43	photosystem II subunit R	[more]

BLAST of CmaCh16G004680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101853\|ref\|XP_008451826.1\|	4.2e-63	92.75	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]	[more]
gi\|449460036\|ref\|XP_004147752.1\|	9.3e-63	92.03	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus]	[more]
gi\|1012347833\|gb\|KYP59024.1\|	1.6e-59	87.05	hypothetical protein KK1_014449 [Cajanus cajan]	[more]
gi\|593697572\|ref\|XP_007149259.1\|	1.8e-58	86.33	hypothetical protein PHAVU_005G055200g [Phaseolus vulgaris]	[more]
gi\|158343304\|gb\|ABW35320.1\|	1.8e-58	87.05	chloroplast photosystem II PsbR [Prosopis juliflora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006814	PSII_PsbR

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0042651	thylakoid membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0009637	response to blue light
biological_process	GO:0010218	response to far red light
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010114	response to red light
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009735	response to cytokinin
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004680.1	CmaCh16G004680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 40..137 score: 1.0
None	No IPR available	PANTHER	PTHR34369	FAMILY NOT NAMED	coord: 2..138 score: 2.6
None	No IPR available	PANTHER	PTHR34369:SF2	PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC	coord: 2..138 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004680	Cucsa.179820	Cucumber (Gy14) v1	cgycmaB0511
CmaCh16G004680	Cla005420	Watermelon (97103) v1	cmawmB308
CmaCh16G004680	Csa4G064020	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G004680	MELO3C016181	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G004680	ClCG07G010700	Watermelon (Charleston Gray)	cmawcgB300
CmaCh16G004680	CSPI04G07380	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G004680	CmoCh16G005090	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004680	Lsi07G008230	Bottle gourd (USVL1VR-Ls)	cmalsiB325
CmaCh16G004680	Cp4.1LG14g03290	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004680	MELO3C016181.2	Melon (DHL92) v3.6.1	cmamedB351
CmaCh16G004680	CsaV3_4G007600	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G004680	Cla97C07G137460	Watermelon (97103) v2	cmawmbB350
CmaCh16G004680	Bhi01G002406	Wax gourd	cmawgoB0437
CmaCh16G004680	CsGy4G007250	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G004680	Carg11392	Silver-seed gourd	carcmaB0924

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004680	Cucurbita maxima (Rimu)	cmacmaB353
CmaCh16G004680	Cucurbita moschata (Rifu)	cmacmoB340
CmaCh16G004680	Cucurbita pepo (Zucchini)	cmacpeB353
CmaCh16G004680	Silver-seed gourd	carcmaB0052