CSPI04G07380 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G07380
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	10 kDa photosystem II polypeptide
Location	Chr4 : 5225160 .. 5227096 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTATCAAGCTCTGAGTTCCGTTTTGCGCCATTGCATCTTTTCGAGCTAAACAAGAAGAAGAAGAGGAAGTAGAAGAAGAAGCTTATCGATCGGAAATGGCGGCCTCAGTTATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCCAGTGGTCTTCCATCTCTGGCGAGAAAGTCCTTTTCCTTCAAGGTCGTGGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGTAAAATTAGCTATCTATTGATGCGGTATTTGGCTTTTTGGAGACTGTTAGGGGATTGGTTTTAAGTTTATTTACGATTCTCACTCGTATAGGAATCAATGGTTCGATGAATTTGAGGGATGGACTTGATGCATCAGGAAGGAAGGGCAAGGTTAGTATTCGCAATTCTGAATCTGCCGTTTTGGTAATCTTATTAGCTACTCTGTAGTCTGTAACTCAATCTGTTTTGGAATTTGATTGATTTAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAACGTCGATGGTTACAGGTGAAACATCTGGCTCTGATTTTGTTCATAGTTTTCTGAATTTGAAAATCAACCTGAATTCTAAGCGTTATTGTTCATGTTTAATTTGGAAATCTTTCATTATTACGTATCAACAAACTAAACCTTACGTTTATTGTATTCTAAACTTTTGCAGTCCCATCTACGACACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTAAGTTCTTCCTCCACTTTTGAATTTGCAACCCTATTTCTTTTGAATCATTCATGCATGCATATGATATATATATATATATATATATATTACAGAAATTTGAGTTTTATACGTTATTTATTTGAATTGATTGTGGCTAGTTAATCAATCCTAGATTTGCAAATTGACTTGATAACTTGGAGTGGAAAAGTTTATATATAGTATTTCTATATTATTATACTCCATTTGTTTACGCTCTAAATTTGTCAACAATAGATTCTACGCTAATACTAATACACTCCATTCTATTATTTAAAAAATATGATGACATGTCACAATTAAATAGAGAAGTACATGTCAATTAAAGCCGTAGATTACAATAGGTTATTCATTTTATATATTCTTAACCCTCTCTCTCAAAGCCTTAAAAAATAAATTGTTGTTATAAATTAAAATAGATTACAATGTTTCCATTTGAATTCAACCCTTCTTACTTTAGAAGCAACTGGCATGTTAAATATTTTTTTGATCCAACGATGTGCATTTGTTTTTTACTTTATAGTTAATTCTAATGTAAATAATATCCATGCAGAAAACTTGCATCAAAATTATGTTACCAAACAGAAGTCAGTATCAATACCTTGTGTGAAAAAGGGATACTATTGAAATATGAAATATGGAATTGCATTGTGATTGAACATGAACATATTTGTTGATATATTATGGACAACATTGAATTTCAGGTACTACTGGGTTAGCCATTTGGGCAGCGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTCGTGTACAACACCAGTGCTTTGGTGCAGTAAGGTGTGAAGGGAAAGTTAAAAGTCTTGTTTTTTCTTCACATTAGTTTTTGTAGCATGTTATTATTATGAACAAACATTATTATTAAGAACTTCTGTGTAATTATCTGGATAATTGTTTCATAAATGCTTGGTAAGATAATTCTTCTCTTTCCCATCTTTTCTTCTTGTTTTTTCCTTTCAGGGTTGGCACCGAGTTTGAAATCACTTTTTGGATAGAGTACTATTTTAGGTCAAATAACAATTCTTCTATACTAATTAAAGCAGTTTTTGACTGTTTATTCTGAATTCAGGTGTAGTGTTTTTAGCTTAAAATATATACCCTTGATCGGAATGTTTAAATGTTCGAATTTCTTCCTCT

mRNA sequence

ATGGCGGCCTCAGTTATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCCAGTGGTCTTCCATCTCTGGCGAGAAAGTCCTTTTCCTTCAAGGTCGTGGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGACTTGATGCATCAGGAAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAACGTCGATGGTTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGCGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTCGTGTACAACACCAGTGCTTTGGTGCAGTAA

Coding sequence (CDS)

ATGGCGGCCTCAGTTATGACCTCAGTGAGTCTTAAACCAGCTCCCTTCACCGTCGAGAAATCGGCCAGTGGTCTTCCATCTCTGGCGAGAAAGTCCTTTTCCTTCAAGGTCGTGGCCAGTGGTGGGAAGAAGATCAAGACCGACAAACCATACGGAATCAATGGTTCGATGAATTTGAGGGATGGACTTGATGCATCAGGAAGGAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTCGACAAGTACGGAGCCAACGTCGATGGTTACAGTCCCATCTACGACACCAAAGACTGGTCTCCAACTGGTGATGTCTATGTTGGTGGTACTACTGGGTTAGCCATTTGGGCAGCGACTTTGGCTGGTCTTCTTGCTGGAGGTGCTCTTCTCGTGTACAACACCAGTGCTTTGGTGCAGTAA

Homology

[Close]

BLAST of CSPI04G07380 vs. Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.5e-55
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA++VM   SLKPAPF+VEK+A  GLPSLAR S SF+V ASG KK+KTDKPYGINGSM+L
Sbjct: 1   MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG+DASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWSP+GDVYVGGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLV+NTSAL Q
Sbjct: 121 VGILAGGALLVFNTSALAQ 136

[Close]

BLAST of CSPI04G07380 vs. Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.1e-55
Identity = 113/139 (81.29%), Postives = 125/139 (89.93%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEK-SASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK S  GLPSLAR S SFKVVASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WSP+GDVYVGGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLVYNTSAL Q
Sbjct: 121 VGILAGGALLVYNTSALAQ 138

[Close]

BLAST of CSPI04G07380 vs. Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.7e-54
Identity = 112/139 (80.58%), Postives = 124/139 (89.21%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEK-SASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA++VM+S+SLKP  FT+EK S  GLPSL R S SFKVVASG KK+KTDKPYGINGSM L
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMAL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WSP+GDVYVGGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            G+LAGGALLVYNTSAL Q
Sbjct: 121 LGILAGGALLVYNTSALAQ 138

[Close]

BLAST of CSPI04G07380 vs. Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.3e-52
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 1


Query: 1   MAASVM-TSVSLKPAPFTVEKSAS-GLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK+A+ GLPSL R   SFK+VASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAAT 120
           LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWA T
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAG+LAGGALLVYNTSAL Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]

BLAST of CSPI04G07380 vs. Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-51
Identity = 111/141 (78.72%), Postives = 124/141 (87.94%), Query Frame = 1


Query: 1   MAASVM-TSVSLKPAPFTVEK-SASGLPSLARKS-FSFKVVASGGKKIKTDKPYGINGSM 60
           MAASVM +SV+LKPA FTVEK SA GLPSL R S  SF++VASG KKIKTDKP+G+NGSM
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60

Query: 61  NLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAA 120
           +LRDG+DASGRKGKG GVY+FVDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWA 
Sbjct: 61  DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120

Query: 121 TLAGLLAGGALLVYNTSALVQ 139
           TLAG+LAGGALLVYNTSAL Q
Sbjct: 121 TLAGILAGGALLVYNTSALAQ 141

[Close]

BLAST of CSPI04G07380 vs. TrEMBL
Match: A0A0A0KXH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064020 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120
           DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of CSPI04G07380 vs. TrEMBL
Match: A0A151SW65_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014449 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-59
Identity = 121/139 (87.05%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFT++KS+  GLPSL+R S SFKVVASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVALKPAPFTLDKSSVRGLPSLSRNSSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTK+WSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKEWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
           AGLLAGGALLVYNTSAL Q
Sbjct: 121 AGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CSPI04G07380 vs. TrEMBL
Match: A0A0B2R1D6_GLYSO (Photosystem II 10 kDa polypeptide, chloroplastic OS=Glycine soja GN=glysoja_025556 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-59
Identity = 123/139 (88.49%), Postives = 128/139 (92.09%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEKS+  GLPSL+R S SF+VVASGGKKIKTDKPYGING M L
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMAL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGTDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            GLLAGGALLVYNTSALVQ
Sbjct: 121 LGLLAGGALLVYNTSALVQ 139

[Close]

BLAST of CSPI04G07380 vs. TrEMBL
Match: A0A0S3SKA3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G223300 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.7e-59
Identity = 121/139 (87.05%), Postives = 127/139 (91.37%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEKS+  GLPSL+R S SF+VVASGGKKIKTD PYGI+G MNL
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDTPYGISGGMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            GLLAGG LLVYNTSAL Q
Sbjct: 121 LGLLAGGVLLVYNTSALAQ 139

[Close]

BLAST of CSPI04G07380 vs. TrEMBL
Match: A0A0L9UI72_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g019400 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 9.7e-59
Identity = 121/139 (87.05%), Postives = 127/139 (91.37%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEKS+  GLPSL+R S SF+VVASGGKKIKTD PYGI+G MNL
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDTPYGISGGMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            GLLAGG LLVYNTSAL Q
Sbjct: 121 LGLLAGGVLLVYNTSALAQ 139

[Close]

BLAST of CSPI04G07380 vs. TAIR10
Match: AT1G79040.1 (AT1G79040.1 photosystem II subunit R)

HSP 1 Score: 205.7 bits (522), Expect = 1.9e-53
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 1


Query: 1   MAASVM-TSVSLKPAPFTVEKSAS-GLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMN 60
           MAASVM +SV+LKPA FTVEK+A+ GLPSL R   SFK+VASG KKIKTDKP+GINGSM+
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60

Query: 61  LRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAAT 120
           LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +WS +GDVY GG TGLAIWA T
Sbjct: 61  LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120

Query: 121 LAGLLAGGALLVYNTSALVQ 139
           LAG+LAGGALLVYNTSAL Q
Sbjct: 121 LAGILAGGALLVYNTSALAQ 140

[Close]

BLAST of CSPI04G07380 vs. NCBI nr
Match: gi|449460036|ref|XP_004147752.1| (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-68
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120
           DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA
Sbjct: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of CSPI04G07380 vs. NCBI nr
Match: gi|659101853|ref|XP_008451826.1| (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 1.0e-64
Identity = 132/138 (95.65%), Postives = 133/138 (96.38%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSASGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNLR 60
           MAASVMTSVSLKPAPFTVEKSA GLPSLAR S SFKVVASGGKKIKTDKPYGINGSMNLR
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPYGINGSMNLR 60

Query: 61  DGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATLA 120
           DG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWA TLA
Sbjct: 61  DGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAVTLA 120

Query: 121 GLLAGGALLVYNTSALVQ 139
           GLLAGGALLVYNTSALVQ
Sbjct: 121 GLLAGGALLVYNTSALVQ 138

[Close]

BLAST of CSPI04G07380 vs. NCBI nr
Match: gi|1012347833|gb|KYP59024.1| (hypothetical protein KK1_014449 [Cajanus cajan])

HSP 1 Score: 236.9 bits (603), Expect = 2.1e-59
Identity = 121/139 (87.05%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFT++KS+  GLPSL+R S SFKVVASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVALKPAPFTLDKSSVRGLPSLSRNSSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTK+WSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKEWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
           AGLLAGGALLVYNTSAL Q
Sbjct: 121 AGLLAGGALLVYNTSALAQ 139

[Close]

BLAST of CSPI04G07380 vs. NCBI nr
Match: gi|734392724|gb|KHN27751.1| (Photosystem II 10 kDa polypeptide, chloroplastic [Glycine soja])

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-59
Identity = 123/139 (88.49%), Postives = 128/139 (92.09%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SV+LKPAPFTVEKS+  GLPSL+R S SF+VVASGGKKIKTDKPYGING M L
Sbjct: 1   MASSVMASVALKPAPFTVEKSSVRGLPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMAL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDG DASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGTDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            GLLAGGALLVYNTSALVQ
Sbjct: 121 LGLLAGGALLVYNTSALVQ 139

[Close]

BLAST of CSPI04G07380 vs. NCBI nr
Match: gi|1012207501|ref|XP_015932271.1| (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Arachis duranensis])

HSP 1 Score: 236.1 bits (601), Expect = 3.7e-59
Identity = 122/139 (87.77%), Postives = 127/139 (91.37%), Query Frame = 1


Query: 1   MAASVMTSVSLKPAPFTVEKSA-SGLPSLARKSFSFKVVASGGKKIKTDKPYGINGSMNL 60
           MA+SVM SVSLKPAPFT E+S+  G+PSL+R   SFKVVASGGKKIKTDKPYGING MNL
Sbjct: 1   MASSVMASVSLKPAPFTAERSSVRGIPSLSRAPSSFKVVASGGKKIKTDKPYGINGGMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGGTTGLAIWAATL 120
           RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVY GGTTGLAIWA TL
Sbjct: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYTGGTTGLAIWAVTL 120

Query: 121 AGLLAGGALLVYNTSALVQ 139
            GLLAGGALLVYNTSAL Q
Sbjct: 121 VGLLAGGALLVYNTSALSQ 139

The following BLAST results are available for this feature:

BLAST of CSPI04G07380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSBR_TOBAC	5.5e-55	81.29	Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE...	[more]
PSBR_SOLTU	7.1e-55	81.29	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE...	[more]
PSBR_SOLLC	2.7e-54	80.58	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR...	[more]
PSBR_ARATH	3.3e-52	78.57	Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR...	[more]
PSBR_BRACM	1.6e-51	78.72	Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR ...	[more]

BLAST of CSPI04G07380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXH3_CUCSA	1.0e-68	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G064020 PE=4 SV=1	[more]
A0A151SW65_CAJCA	1.5e-59	87.05	Uncharacterized protein OS=Cajanus cajan GN=KK1_014449 PE=4 SV=1	[more]
A0A0B2R1D6_GLYSO	2.0e-59	88.49	Photosystem II 10 kDa polypeptide, chloroplastic OS=Glycine soja GN=glysoja_0255...	[more]
A0A0S3SKA3_PHAAN	9.7e-59	87.05	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G223300 PE=...	[more]
A0A0L9UI72_PHAAN	9.7e-59	87.05	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g019400 PE=4 SV=1	[more]

BLAST of CSPI04G07380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79040.1	1.9e-53	78.57	photosystem II subunit R	[more]

BLAST of CSPI04G07380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460036\|ref\|XP_004147752.1\|	1.5e-68	100.00	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis sativus]	[more]
gi\|659101853\|ref\|XP_008451826.1\|	1.0e-64	95.65	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo]	[more]
gi\|1012347833\|gb\|KYP59024.1\|	2.1e-59	87.05	hypothetical protein KK1_014449 [Cajanus cajan]	[more]
gi\|734392724\|gb\|KHN27751.1\|	2.8e-59	88.49	Photosystem II 10 kDa polypeptide, chloroplastic [Glycine soja]	[more]
gi\|1012207501\|ref\|XP_015932271.1\|	3.7e-59	87.77	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006814	PSII_PsbR
IPR006814	PSII_PsbR

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0042651	thylakoid membrane
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0042651	thylakoid membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0009637	response to blue light
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0010218	response to far red light
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010114	response to red light
biological_process	GO:0009744	response to sucrose
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G07380.2	CSPI04G07380.2	mRNA
CSPI04G07380.1	CSPI04G07380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 40..136 score: 1.1
None	No IPR available	PANTHER	PTHR34369	FAMILY NOT NAMED	coord: 2..138 score: 1.4
None	No IPR available	PANTHER	PTHR34369:SF2	PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC	coord: 2..138 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G07380	Cla005420	Watermelon (97103) v1	cpiwmB314
CSPI04G07380	Csa4G064020	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G07380	MELO3C016181	Melon (DHL92) v3.5.1	cpimeB312
CSPI04G07380	ClCG07G010700	Watermelon (Charleston Gray)	cpiwcgB341
CSPI04G07380	Lsi07G008230	Bottle gourd (USVL1VR-Ls)	cpilsiB304
CSPI04G07380	MELO3C016181.2	Melon (DHL92) v3.6.1	cpimedB303
CSPI04G07380	CsaV3_4G007600	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G07380	Cla97C07G137460	Watermelon (97103) v2	cpiwmbB331
CSPI04G07380	Bhi01G002406	Wax gourd	cpiwgoB367
CSPI04G07380	Cucsa.179820	Cucumber (Gy14) v1	cgycpiB285
CSPI04G07380	CmaCh16G004680	Cucurbita maxima (Rimu)	cmacpiB342
CSPI04G07380	CmoCh16G005090	Cucurbita moschata (Rifu)	cmocpiB332
CSPI04G07380	Cp4.1LG14g03290	Cucurbita pepo (Zucchini)	cpecpiB223
CSPI04G07380	CsGy4G007250	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G07380	Carg11392	Silver-seed gourd	carcpiB0687

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G07380	Cucurbita pepo (Zucchini)	cpecpiB396
CSPI04G07380	Silver-seed gourd	carcpiB0051
CSPI04G07380	Cucurbita maxima (Rimu)	cmacpiB714
CSPI04G07380	Cucurbita moschata (Rifu)	cmocpiB707