CmaCh16G002990 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G002990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAspartate--tRNA(Asp/Asn) ligase
LocationCma_Chr16 : 1400322 .. 1401859 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTTTGAAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTCGATAAATACTATCAAATAGCAAGGTACTAATATTTGTATCATCAAGCACCATTTCCATCATGTTTATCGTCTCATTTTGTGTTGATTTATTCTCTTTTCTTTCCAAAAAAAACTATATATGTATATGGAAAATTTGCCTATAGATTTAATGACTAGTATGATTGTTTTCATCAAACTTAGGAGCTAAGTTCTTTCTGCTTTTCCCTTTTGAGTTGTGAGAATCAGATGGCTGTTTTAAGTATGTAGCAGACATCATATTTTCACCTTCAGTTTCATATCCCTTCTTTGTAGGTGTTTCCGAGATGAAGACCTAAGAGCTGACCGACAACCTGAGTTTACACAACTTGATATGGAATTAGCATTTACAACTTTGGAAGACATGCTGAAGCTCAACGAAGATTTGATTAGAAAGGTAGACTCTGATGAGAATTGACTTGATGATTGAATGTTAGAATGCTTGTATCCATTATTATAGGTTGCACTGTTAAAATATTTTAAGAGAGGCAGAGGTAATTGCCACAAACTTTTGCTATCACCACCAAACTTTTAATAACTTATTGTCTGTAAGAGGTAGTAACTACATCCAAGAAGAGGAGAAAAGTTCAACTCCGTCGGGAGATTCAGGCATTCTAAGGGTCCAAGGCCTAAAATACCACTTTATTCATCTTTTGCCCTCCTATTTTTTGGCTGCTGATGGTAAAGAAAAAAAATTATATTTGTAGGTTTTTTGGGAAGTAAAAGGTGTTCAGCTGCCAAATCCTTTCCCGAAGCTTACTTATTCTGAAGCGATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTGAAAGATGTAAACTTCTCTCCTTTCTACTTCTGGATCTAATTCTGACTTTCAAGATTAAGTTTTCAAATGAAGTTGTTTTTTTTATTGTGTAACGTATGTCTTGAACCAATGAGTGTGCATTGGAAGATGAAACCTTCTAGCTTTTGTTGTGCCTTAAAAGCAGTTTCCTATTGGTCCGACTTGTCAAAATTTTAATTATTTTGCATTACTTTGGAGAATATTCAGTACTTTTTTATCTGTTGAATCTCTTATCTTCTTTGCCGTTTTCTTCTTGTTTCATTGTTCATACAAGTCCGAATGACTTAAGGATTTATTAATATCTTCATTCAATTAAGTCTAATCGGATTGGCCTTTTCATAATATGGCTTTTTGGGTACTGTTTTTGGCATTTGGGCAGATTTGATTGGAAAAACTTTCATCATTCAACTGAACCACGTTGAGGCCTGAATCCATGAATTAAAAATTAAAAGAGATTTAGTCATTTGTATGAATTAAAGATTCCTTTGAATTAGCTAGTAATAGATTTTCTCTTTGGAGCTGCAGGTGTCTGATATTTTTGCAGATTCTTCATTTAAGGTTTTTGCAGACGCCTTGTCTAATGGCGGAATCATCTAA

mRNA sequence

ATGTGTATTTTGAAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTCGATAAATACTATCAAATAGCAAGGTGTTTCCGAGATGAAGACCTAAGAGCTGACCGACAACCTGAGTTTACACAACTTGATATGGAATTAGCATTTACAACTTTGGAAGACATGCTGAAGCTCAACGAAGATTTGATTAGAAAGGTTTTTTGGGAAGTAAAAGGTGTTCAGCTGCCAAATCCTTTCCCGAAGCTTACTTATTCTGAAGCGATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTGAAAGATGTGTCTGATATTTTTGCAGATTCTTCATTTAAGGTTTTTGCAGACGCCTTGTCTAATGGCGGAATCATCTAA

Coding sequence (CDS)

ATGTGTATTTTGAAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTCGATAAATACTATCAAATAGCAAGGTGTTTCCGAGATGAAGACCTAAGAGCTGACCGACAACCTGAGTTTACACAACTTGATATGGAATTAGCATTTACAACTTTGGAAGACATGCTGAAGCTCAACGAAGATTTGATTAGAAAGGTTTTTTGGGAAGTAAAAGGTGTTCAGCTGCCAAATCCTTTCCCGAAGCTTACTTATTCTGAAGCGATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTGAAAGATGTGTCTGATATTTTTGCAGATTCTTCATTTAAGGTTTTTGCAGACGCCTTGTCTAATGGCGGAATCATCTAA

Protein sequence

MCILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTLEDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFADSSFKVFADALSNGGII
Homology
[Close]
BLAST of CmaCh16G002990 vs. Swiss-Prot
Match: SYDM_ARATH (Aspartate--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At4g33760 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-62
Identity = 111/137 (81.02%), Postives = 129/137 (94.16%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++ GTF+ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDME+AF  +
Sbjct: 264 IQSGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFMPM 323

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDMLKLNEDLIRKVF E+KG+QLP+PFP+LTY++AM RYGSDRPDTRFDL+LKDVS++F 
Sbjct: 324 EDMLKLNEDLIRKVFSEIKGIQLPDPFPRLTYADAMDRYGSDRPDTRFDLELKDVSNVFT 383

Query: 124 DSSFKVFADALSNGGII 141
           +SSF+VF +AL +GGII
Sbjct: 384 ESSFRVFTEALESGGII 400

[Close]
BLAST of CmaCh16G002990 vs. Swiss-Prot
Match: SYDND_NOSS1 (Aspartate--tRNA(Asp/Asn) ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=aspS PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.8e-53
Identity = 96/137 (70.07%), Postives = 119/137 (86.86%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           + PG +FALPQSPQLFKQ+LMVSG D+YYQIARCFRDEDLRADRQPEFTQLDME++F + 
Sbjct: 189 VNPGEWFALPQSPQLFKQILMVSGLDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSE 248

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           E++++LNE L+  +F  VKGV+LP PFP+LTY+EAM RYG D+PDTR+DLQL +VSD+  
Sbjct: 249 EEIIELNEKLVSYIFKTVKGVELPLPFPRLTYAEAMERYGCDKPDTRYDLQLVNVSDVMK 308

Query: 124 DSSFKVFADALSNGGII 141
           DS FKVF DA++NGGI+
Sbjct: 309 DSGFKVFRDAVANGGIV 325

[Close]
BLAST of CmaCh16G002990 vs. Swiss-Prot
Match: SYDND_ANAVT (Aspartate--tRNA(Asp/Asn) ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aspS PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.8e-53
Identity = 96/137 (70.07%), Postives = 119/137 (86.86%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           + PG +FALPQSPQLFKQ+LMVSG D+YYQIARCFRDEDLRADRQPEFTQLDME++F + 
Sbjct: 208 VNPGEWFALPQSPQLFKQILMVSGMDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSE 267

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           E++++LNE L+  +F  VKGV+LP PFP+LTY+EAM RYG D+PDTR+DLQL +VSD+  
Sbjct: 268 EEIIQLNEKLVSYIFKTVKGVELPLPFPRLTYAEAMERYGCDKPDTRYDLQLVNVSDVMK 327

Query: 124 DSSFKVFADALSNGGII 141
           DS FKVF DA++NGGI+
Sbjct: 328 DSGFKVFRDAVANGGIV 344

[Close]
BLAST of CmaCh16G002990 vs. Swiss-Prot
Match: SYDND_SYNE7 (Aspartate--tRNA(Asp/Asn) ligase OS=Synechococcus elongatus (strain PCC 7942) GN=aspS PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-52
Identity = 96/135 (71.11%), Postives = 116/135 (85.93%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           + PG +FALPQSPQLFKQ+LMVSGFD+YYQIARCFRDEDLRADRQPEFTQLDME++F + 
Sbjct: 189 VNPGEWFALPQSPQLFKQLLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFLSQ 248

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           E+++ LNE LI  +F  VKG++LP PFP+LTY+EAM RYGSDRPDTRF L+L DVSD+ A
Sbjct: 249 EEIIDLNERLIAHIFKTVKGIELPRPFPRLTYAEAMDRYGSDRPDTRFGLELVDVSDVVA 308

Query: 124 DSSFKVFADALSNGG 139
           D  FKVF+ A+ +GG
Sbjct: 309 DMGFKVFSGAVKSGG 323

[Close]
BLAST of CmaCh16G002990 vs. Swiss-Prot
Match: SYDND_TRIEI (Aspartate--tRNA(Asp/Asn) ligase OS=Trichodesmium erythraeum (strain IMS101) GN=aspS PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.3e-52
Identity = 95/135 (70.37%), Postives = 117/135 (86.67%), Query Frame = 1 

Query: 6   PGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTLED 65
           PG +FALPQSPQLFKQ+LMVSGFD+YYQIARCFRDEDLRADRQPEFTQLDME++F + E+
Sbjct: 191 PGEWFALPQSPQLFKQILMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMEMSFMSQEE 250

Query: 66  MLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFADS 125
           +L+LNE L+  +F +VKG+ LP PFP+LTY+EAM RYGSD+PD RF L+L DVSD+  DS
Sbjct: 251 ILQLNEKLVAYIFQKVKGIDLPLPFPRLTYTEAMERYGSDKPDVRFGLELVDVSDLMKDS 310

Query: 126 SFKVFADALSNGGII 141
            FKVF+ A++ GGI+
Sbjct: 311 GFKVFSGAIAKGGIV 325

[Close]
BLAST of CmaCh16G002990 vs. TrEMBL
Match: E5GBH9_CUCME (Aspartyl-tRNA synthetase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-69
Identity = 132/140 (94.29%), Postives = 137/140 (97.86%), Query Frame = 1 

Query: 1   MCILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 60
           M ILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+F
Sbjct: 240 MYILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSF 299

Query: 61  TTLEDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSD 120
           TTLEDML+LNEDLIRKVFWEVKGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDLQL DVSD
Sbjct: 300 TTLEDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSD 359

Query: 121 IFADSSFKVFADALSNGGII 141
           IFADS FKVFADALS+GGII
Sbjct: 360 IFADSPFKVFADALSSGGII 379

[Close]
BLAST of CmaCh16G002990 vs. TrEMBL
Match: A0A0A0KT15_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000540 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.2e-68
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+FTTL
Sbjct: 270 VQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTL 329

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVFWEVKGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDLQL DVSDIFA
Sbjct: 330 EDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFA 389

Query: 124 DSSFKVFADALSNGGII 141
           DS FKVFADALS+GGII
Sbjct: 390 DSPFKVFADALSSGGII 406

[Close]
BLAST of CmaCh16G002990 vs. TrEMBL
Match: B9GIN8_POPTR (tRNA synthetase class II family protein OS=Populus trichocarpa GN=POPTR_0001s29600g PE=4 SV=2)

HSP 1 Score: 252.3 bits (643), Expect = 3.5e-64
Identity = 120/137 (87.59%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTF+ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT +
Sbjct: 266 IQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPM 325

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVF E+KGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDL LKDVSDIF+
Sbjct: 326 EDMLRLNEDLIRKVFLEIKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLHLKDVSDIFS 385

Query: 124 DSSFKVFADALSNGGII 141
           +SSF+VFAD+L +GGII
Sbjct: 386 ESSFRVFADSLKSGGII 402

[Close]
BLAST of CmaCh16G002990 vs. TrEMBL
Match: B9HN33_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08760g PE=4 SV=2)

HSP 1 Score: 251.9 bits (642), Expect = 4.5e-64
Identity = 120/137 (87.59%), Postives = 134/137 (97.81%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTF+ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL
Sbjct: 261 IQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 320

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVF E+KGVQLPNP P+LTY+EAMS+YGSDRPDTRFDL LK+VSDIFA
Sbjct: 321 EDMLRLNEDLIRKVFLEIKGVQLPNPIPRLTYAEAMSKYGSDRPDTRFDLHLKEVSDIFA 380

Query: 124 DSSFKVFADALSNGGII 141
           +SSF+VFAD+L++GGII
Sbjct: 381 ESSFRVFADSLNSGGII 397

[Close]
BLAST of CmaCh16G002990 vs. TrEMBL
Match: A0A124SF22_CYNCS (Aminoacyl-tRNA synthetase, class II OS=Cynara cardunculus var. scolymus GN=Ccrd_019844 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 5.9e-64
Identity = 121/137 (88.32%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTF+ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFT L
Sbjct: 272 VQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTPL 331

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVF ++KGV+LP PFP+LTY+EA+SRYGSDRPDTRFDLQLKDVSDIF+
Sbjct: 332 EDMLRLNEDLIRKVFLDIKGVELPXPFPRLTYAEAISRYGSDRPDTRFDLQLKDVSDIFS 391

Query: 124 DSSFKVFADALSNGGII 141
           DSSFKVFADALS+GG I
Sbjct: 392 DSSFKVFADALSSGGXI 408

[Close]
BLAST of CmaCh16G002990 vs. TAIR10
Match: AT4G33760.1 (AT4G33760.1 tRNA synthetase class II (D, K and N) family protein)

HSP 1 Score: 238.0 bits (606), Expect = 3.4e-63
Identity = 111/137 (81.02%), Postives = 129/137 (94.16%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++ GTF+ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDME+AF  +
Sbjct: 264 IQSGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEMAFMPM 323

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDMLKLNEDLIRKVF E+KG+QLP+PFP+LTY++AM RYGSDRPDTRFDL+LKDVS++F 
Sbjct: 324 EDMLKLNEDLIRKVFSEIKGIQLPDPFPRLTYADAMDRYGSDRPDTRFDLELKDVSNVFT 383

Query: 124 DSSFKVFADALSNGGII 141
           +SSF+VF +AL +GGII
Sbjct: 384 ESSFRVFTEALESGGII 400

[Close]
BLAST of CmaCh16G002990 vs. NCBI nr
Match: gi|307135961|gb|ADN33821.1| (aspartyl-tRNA synthetase [Cucumis melo subsp. melo])

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-69
Identity = 132/140 (94.29%), Postives = 137/140 (97.86%), Query Frame = 1 

Query: 1   MCILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAF 60
           M ILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+F
Sbjct: 240 MYILKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSF 299

Query: 61  TTLEDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSD 120
           TTLEDML+LNEDLIRKVFWEVKGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDLQL DVSD
Sbjct: 300 TTLEDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSD 359

Query: 121 IFADSSFKVFADALSNGGII 141
           IFADS FKVFADALS+GGII
Sbjct: 360 IFADSPFKVFADALSSGGII 379

[Close]
BLAST of CmaCh16G002990 vs. NCBI nr
Match: gi|778689110|ref|XP_004150278.2| (PREDICTED: aspartate--tRNA ligase, mitochondrial [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 7.4e-68
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+FTTL
Sbjct: 270 VQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTL 329

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVFWEVKGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDLQL DVSDIFA
Sbjct: 330 EDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFA 389

Query: 124 DSSFKVFADALSNGGII 141
           DS FKVFADALS+GGII
Sbjct: 390 DSPFKVFADALSSGGII 406

[Close]
BLAST of CmaCh16G002990 vs. NCBI nr
Match: gi|659108866|ref|XP_008454427.1| (PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 7.4e-68
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+FTTL
Sbjct: 104 VQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTL 163

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVFWEVKGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDLQL DVSDIFA
Sbjct: 164 EDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFA 223

Query: 124 DSSFKVFADALSNGGII 141
           DS FKVFADALS+GGII
Sbjct: 224 DSPFKVFADALSSGGII 240

[Close]
BLAST of CmaCh16G002990 vs. NCBI nr
Match: gi|659108863|ref|XP_008454426.1| (PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 7.4e-68
Identity = 128/137 (93.43%), Postives = 135/137 (98.54%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMEL+FTTL
Sbjct: 270 VQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELSFTTL 329

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVFWEVKGVQLPNPFP+LTY+EAMSRYGSDRPDTRFDLQL DVSDIFA
Sbjct: 330 EDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFA 389

Query: 124 DSSFKVFADALSNGGII 141
           DS FKVFADALS+GGII
Sbjct: 390 DSPFKVFADALSSGGII 406

[Close]
BLAST of CmaCh16G002990 vs. NCBI nr
Match: gi|743795426|ref|XP_011002511.1| (PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X2 [Populus euphratica])

HSP 1 Score: 252.7 bits (644), Expect = 3.8e-64
Identity = 120/137 (87.59%), Postives = 134/137 (97.81%), Query Frame = 1 

Query: 4   LKPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 63
           ++PGTF+ALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL
Sbjct: 266 IQPGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTL 325

Query: 64  EDMLKLNEDLIRKVFWEVKGVQLPNPFPKLTYSEAMSRYGSDRPDTRFDLQLKDVSDIFA 123
           EDML+LNEDLIRKVF E+KGVQLPNPFP+LTY+EAMS+YGSDRPDTRFDL LK+VSDIFA
Sbjct: 326 EDMLRLNEDLIRKVFLEIKGVQLPNPFPRLTYAEAMSKYGSDRPDTRFDLHLKEVSDIFA 385

Query: 124 DSSFKVFADALSNGGII 141
           +SSF+VF D+L++GGII
Sbjct: 386 ESSFRVFTDSLNSGGII 402

The following BLAST results are available for this feature:
BLAST of CmaCh16G002990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SYDM_ARATH6.1e-6281.02Aspartate--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=A... [more]
SYDND_NOSS18.8e-5370.07Aspartate--tRNA(Asp/Asn) ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=a... [more]
SYDND_ANAVT8.8e-5370.07Aspartate--tRNA(Asp/Asn) ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC ... [more]
SYDND_SYNE72.6e-5271.11Aspartate--tRNA(Asp/Asn) ligase OS=Synechococcus elongatus (strain PCC 7942) GN=... [more]
SYDND_TRIEI3.3e-5270.37Aspartate--tRNA(Asp/Asn) ligase OS=Trichodesmium erythraeum (strain IMS101) GN=a... [more]
BLAST of CmaCh16G002990 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBH9_CUCME1.6e-6994.29Aspartyl-tRNA synthetase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KT15_CUCSA5.2e-6893.43Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000540 PE=4 SV=1[more]
B9GIN8_POPTR3.5e-6487.59tRNA synthetase class II family protein OS=Populus trichocarpa GN=POPTR_0001s296... [more]
B9HN33_POPTR4.5e-6487.59Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08760g PE=4 SV=2[more]
A0A124SF22_CYNCS5.9e-6488.32Aminoacyl-tRNA synthetase, class II OS=Cynara cardunculus var. scolymus GN=Ccrd_... [more]
BLAST of CmaCh16G002990 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33760.13.4e-6381.02 tRNA synthetase class II (D, K and N) family protein[more]
BLAST of CmaCh16G002990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307135961|gb|ADN33821.1|2.3e-6994.29aspartyl-tRNA synthetase [Cucumis melo subsp. melo][more]
gi|778689110|ref|XP_004150278.2|7.4e-6893.43PREDICTED: aspartate--tRNA ligase, mitochondrial [Cucumis sativus][more]
gi|659108866|ref|XP_008454427.1|7.4e-6893.43PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X2 [Cucumis melo][more]
gi|659108863|ref|XP_008454426.1|7.4e-6893.43PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X1 [Cucumis melo][more]
gi|743795426|ref|XP_011002511.1|3.8e-6487.59PREDICTED: aspartate--tRNA ligase, mitochondrial isoform X2 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002312Asp/Asn-tRNA-synth_IIb
IPR004115GAD-like_sf
IPR004364aa-tRNA-synt_II
IPR004524Asp-tRNA-ligase_1
IPR006195aa-tRNA-synth_II
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0016874ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006422 aspartyl-tRNA aminoacylation
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004815 aspartate-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002990.1CmaCh16G002990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIbPRINTSPR01042TRNASYNTHASPcoord: 12..24
score: 3.4E-10coord: 29..42
score: 3.4
IPR004115GAD-like domainGENE3DG3DSA:3.30.1360.30coord: 102..137
score: 2.6
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)PFAMPF00152tRNA-synt_2coord: 5..114
score: 3.3
IPR004524Aspartate-tRNA ligase, bacterial/mitochondrial-typePANTHERPTHR22594:SF5ASPARTATE--TRNA LIGASE, MITOCHONDRIALcoord: 5..135
score: 2.8
IPR006195Aminoacyl-tRNA synthetase, class IIPROFILEPS50862AA_TRNA_LIGASE_IIcoord: 30..115
score: 9
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-likePANTHERPTHR22594ASPARTYL/LYSYL-TRNA SYNTHETASEcoord: 5..135
score: 2.8
NoneNo IPR availableGENE3DG3DSA:3.30.930.10coord: 6..101
score: 2.6
NoneNo IPR availableunknownSSF55681Class II aaRS and biotin synthetasescoord: 6..132
score: 1.31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G002990Carg08101Silver-seed gourdcarcmaB0526
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G002990Melon (DHL92) v3.6.1cmamedB331
CmaCh16G002990Melon (DHL92) v3.6.1cmamedB354
CmaCh16G002990Silver-seed gourdcarcmaB0406
CmaCh16G002990Cucumber (Chinese Long) v3cmacucB0388
CmaCh16G002990Cucumber (Chinese Long) v3cmacucB0414
CmaCh16G002990Watermelon (97103) v2cmawmbB332
CmaCh16G002990Wax gourdcmawgoB0410
CmaCh16G002990Cucurbita maxima (Rimu)cmacmaB135
CmaCh16G002990Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G002990Cucumber (Gy14) v1cgycmaB0623
CmaCh16G002990Cucumber (Gy14) v1cgycmaB0824
CmaCh16G002990Cucurbita moschata (Rifu)cmacmoB318
CmaCh16G002990Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G002990Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G002990Wild cucumber (PI 183967)cmacpiB338
CmaCh16G002990Cucumber (Chinese Long) v2cmacuB333
CmaCh16G002990Cucumber (Chinese Long) v2cmacuB348
CmaCh16G002990Melon (DHL92) v3.5.1cmameB303
CmaCh16G002990Watermelon (Charleston Gray)cmawcgB280
CmaCh16G002990Watermelon (97103) v1cmawmB293
CmaCh16G002990Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G002990Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G002990Bottle gourd (USVL1VR-Ls)cmalsiB307
CmaCh16G002990Cucumber (Gy14) v2cgybcmaB494