CmaCh16G002680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G002680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr16 : 1257905 .. 1258243 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCGAAGGCTCCGTTGGCGTCTCCGTCAGTGAAGTCGCCGAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA

mRNA sequence

ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCGAAGGCTCCGTTGGCGTCTCCGTCAGTGAAGTCGCCGAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA

Coding sequence (CDS)

ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCGAAGGCTCCGTTGGCGTCTCCGTCAGTGAAGTCGCCGAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAACGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA

Protein sequence

MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVVLMI
Homology
[Close]
BLAST of CmaCh16G002680 vs. Swiss-Prot
Match: AGP1_ARATH (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 1 

Query: 4   RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APLASPSVKSPKSSPAA 63
           +S V ++L ALLI SA+AQSPA +PS      +SP  SP K  AP  +P V    S  AA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPASSPS----------TSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVL 113
            TP SS S          T+ SPA SPS+IS  P +AP P+  GA S  F+ FGSVAV+L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

[Close]
BLAST of CmaCh16G002680 vs. TrEMBL
Match: A0A0A0KZB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.2e-24
Identity = 90/123 (73.17%), Postives = 96/123 (78.05%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSPA-APTPA 60
           MAI S V +I V+  I SA AQSPAASPSLSP KSPSKAP    S  SPKSSPA APTP+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAP----SHNSPKSSPAVAPTPS 60

Query: 61  S----------SPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVV 113
           S          SPSTSPSPA+SP+SISSPPADAPAPSGNGAASI+FSVFGSVAV LYAVV
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

[Close]
BLAST of CmaCh16G002680 vs. TrEMBL
Match: I3S0H2_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-10
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP---------SKAPLASPSVKSPKS 60
           MA  + V M+L ALL+GSA+AQSPA+SP+LSP K+P         S +P  SPS ++P +
Sbjct: 1   MASSTAVFMLLAALLVGSAVAQSPASSPALSPTKTPVAASPRKSLSPSPAVSPSAQTPAA 60

Query: 61  SP-------AAPTPA---SSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSV 112
           SP        +P+PA   S P++S +PA +PSSISSPP++A +PS NGAA   FSV GS 
Sbjct: 61  SPPTPVESGPSPSPATVNSPPASSDAPAVTPSSISSPPSEAQSPSQNGAALNRFSVAGSA 120

[Close]
BLAST of CmaCh16G002680 vs. TrEMBL
Match: I1KR06_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP------SKAPLASPSVKSPKSSPA 60
           MA  + V+ ++ ALL+ S +AQSPA+SP+LSP+++P      S +P  SPS  SP SSP 
Sbjct: 1   MACTTVVLTLVAALLVTSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPP 60

Query: 61  AP----------------TPASSPSTSPS--PAASPSSISSPPADAPAPSGNGAASISFS 113
           AP                +P  SPS SP+  P+ +PS+IS+PP  APAPS NGAA   F+
Sbjct: 61  APVVNTPSPSPNSVDSPPSPPQSPSVSPAGVPSVTPSAISAPPTGAPAPSQNGAALNRFT 120

[Close]
BLAST of CmaCh16G002680 vs. TrEMBL
Match: I1LX63_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G042500 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.8e-08
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP-------SKAPLASPSVKSPKSSP 60
           MA  + +  ++ AL + S +AQSPA+SP+LSP+++P       S +P  SPS  SP SSP
Sbjct: 2   MASSTVLFTLVAALFVTSVVAQSPASSPALSPKRTPVLATPQKSPSPAISPSAVSPSSSP 61

Query: 61  AAPT----------------PASSPSTSPS--PAASPSSISSPPADAPAPSGNGAASISF 113
            APT                P  SPS SP+  P+ +PS+ISSPP++APAPS NGAA   F
Sbjct: 62  PAPTVNAPSPSPTSVDSPPSPPLSPSDSPAGVPSVTPSAISSPPSEAPAPSQNGAALNRF 121

[Close]
BLAST of CmaCh16G002680 vs. TrEMBL
Match: A0A0S3S236_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G022500 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSL---SPRKSPSKAPLA-SPSVKSPKSSPAAP 60
           MA    +++++ A+L+ SA+AQSPA+SP+    SP  SPSK+PL  SPS  S  SSP +P
Sbjct: 1   MASSFTLILMVAAMLVFSAVAQSPASSPNAAATSPAVSPSKSPLTVSPSPDSAVSSPPSP 60

Query: 61  TPASSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVVLMI 113
           +P+S+  +SPS +  PSSIS+PP++AP+PS N A S  FS  GSV VV  A +L+I
Sbjct: 61  SPSSA--SSPSSSVPPSSISAPPSEAPSPSENAAVSYGFSAAGSVVVVFVAALLVI 114

[Close]
BLAST of CmaCh16G002680 vs. TAIR10
Match: AT5G64310.1 (AT5G64310.1 arabinogalactan protein 1)

HSP 1 Score: 57.4 bits (137), Expect = 6.6e-09
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 1 

Query: 4   RSFVVMILVALLIGSAIAQSPAASPS------LSPRKSPSK--APLASPSVKSPKSSPAA 63
           +S V ++L ALLI SA+AQSPA +PS      +SP  SP K  AP  +P V    S  AA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPASSPS----------TSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVL 113
            TP SS S          T+ SPA SPS+IS  P +AP P+  GA S  F+ FGSVAV+L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

[Close]
BLAST of CmaCh16G002680 vs. NCBI nr
Match: gi|449438995|ref|XP_004137273.1| (PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 90/123 (73.17%), Postives = 96/123 (78.05%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSPA-APTPA 60
           MAI S V +I V+  I SA AQSPAASPSLSP KSPSKAP    S  SPKSSPA APTP+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAP----SHNSPKSSPAVAPTPS 60

Query: 61  S----------SPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVV 113
           S          SPSTSPSPA+SP+SISSPPADAPAPSGNGAASI+FSVFGSVAV LYAVV
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

[Close]
BLAST of CmaCh16G002680 vs. NCBI nr
Match: gi|388491396|gb|AFK33764.1| (unknown [Lotus japonicus])

HSP 1 Score: 73.2 bits (178), Expect = 3.3e-10
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP---------SKAPLASPSVKSPKS 60
           MA  + V M+L ALL+GSA+AQSPA+SP+LSP K+P         S +P  SPS ++P +
Sbjct: 1   MASSTAVFMLLAALLVGSAVAQSPASSPALSPTKTPVAASPRKSLSPSPAVSPSAQTPAA 60

Query: 61  SP-------AAPTPA---SSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSV 112
           SP        +P+PA   S P++S +PA +PSSISSPP++A +PS NGAA   FSV GS 
Sbjct: 61  SPPTPVESGPSPSPATVNSPPASSDAPAVTPSSISSPPSEAQSPSQNGAALNRFSVAGSA 120

[Close]
BLAST of CmaCh16G002680 vs. NCBI nr
Match: gi|356524818|ref|XP_003531025.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-08
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP------SKAPLASPSVKSPKSSPA 60
           MA  + V+ ++ ALL+ S +AQSPA+SP+LSP+++P      S +P  SPS  SP SSP 
Sbjct: 1   MACTTVVLTLVAALLVTSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPP 60

Query: 61  AP----------------TPASSPSTSPS--PAASPSSISSPPADAPAPSGNGAASISFS 113
           AP                +P  SPS SP+  P+ +PS+IS+PP  APAPS NGAA   F+
Sbjct: 61  APVVNTPSPSPNSVDSPPSPPQSPSVSPAGVPSVTPSAISAPPTGAPAPSQNGAALNRFT 120

[Close]
BLAST of CmaCh16G002680 vs. NCBI nr
Match: gi|571496957|ref|XP_006593749.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max])

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSP-------SKAPLASPSVKSPKSSP 60
           MA  + +  ++ AL + S +AQSPA+SP+LSP+++P       S +P  SPS  SP SSP
Sbjct: 2   MASSTVLFTLVAALFVTSVVAQSPASSPALSPKRTPVLATPQKSPSPAISPSAVSPSSSP 61

Query: 61  AAPT----------------PASSPSTSPS--PAASPSSISSPPADAPAPSGNGAASISF 113
            APT                P  SPS SP+  P+ +PS+ISSPP++APAPS NGAA   F
Sbjct: 62  PAPTVNAPSPSPTSVDSPPSPPLSPSDSPAGVPSVTPSAISSPPSEAPAPSQNGAALNRF 121

[Close]
BLAST of CmaCh16G002680 vs. NCBI nr
Match: gi|965599718|dbj|BAT86896.1| (hypothetical protein VIGAN_05022500 [Vigna angularis var. angularis])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 58/116 (50.00%), Postives = 81/116 (69.83%), Query Frame = 1 

Query: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSL---SPRKSPSKAPLA-SPSVKSPKSSPAAP 60
           MA    +++++ A+L+ SA+AQSPA+SP+    SP  SPSK+PL  SPS  S  SSP +P
Sbjct: 1   MASSFTLILMVAAMLVFSAVAQSPASSPNAAATSPAVSPSKSPLTVSPSPDSAVSSPPSP 60

Query: 61  TPASSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVVLMI 113
           +P+S+  +SPS +  PSSIS+PP++AP+PS N A S  FS  GSV VV  A +L+I
Sbjct: 61  SPSSA--SSPSSSVPPSSISAPPSEAPSPSENAAVSYGFSAAGSVVVVFVAALLVI 114

The following BLAST results are available for this feature:
BLAST of CmaCh16G002680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP1_ARATH1.2e-0748.03Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2[more]
BLAST of CmaCh16G002680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZB8_CUCSA8.2e-2473.17Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1[more]
I3S0H2_LOTJA2.3e-1050.77Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I1KR06_SOYBN2.2e-0844.85Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1[more]
I1LX63_SOYBN4.8e-0844.53Uncharacterized protein OS=Glycine max GN=GLYMA_13G042500 PE=4 SV=1[more]
A0A0S3S236_PHAAN1.1e-0750.00Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G022500 PE=... [more]
BLAST of CmaCh16G002680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G64310.16.6e-0948.03 arabinogalactan protein 1[more]
BLAST of CmaCh16G002680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438995|ref|XP_004137273.1|1.2e-2373.17PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus][more]
gi|388491396|gb|AFK33764.1|3.3e-1050.77unknown [Lotus japonicus][more]
gi|356524818|ref|XP_003531025.1|3.1e-0844.85PREDICTED: classical arabinogalactan protein 1-like [Glycine max][more]
gi|571496957|ref|XP_006593749.1|6.9e-0844.53PREDICTED: classical arabinogalactan protein 1-like [Glycine max][more]
gi|965599718|dbj|BAT86896.1|1.5e-0750.00hypothetical protein VIGAN_05022500 [Vigna angularis var. angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002680.1CmaCh16G002680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G002680CsaV3_4G009610Cucumber (Chinese Long) v3cmacucB0389
CmaCh16G002680Carg08076Silver-seed gourdcarcmaB0527
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G002680Watermelon (97103) v2cmawmbB332
CmaCh16G002680Watermelon (97103) v2cmawmbB352
CmaCh16G002680Wax gourdcmawgoB0410
CmaCh16G002680Cucurbita maxima (Rimu)cmacmaB351
CmaCh16G002680Cucumber (Gy14) v1cgycmaB1101
CmaCh16G002680Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G002680Cucurbita moschata (Rifu)cmacmoB325
CmaCh16G002680Cucurbita moschata (Rifu)cmacmoB338
CmaCh16G002680Wild cucumber (PI 183967)cmacpiB339
CmaCh16G002680Cucumber (Chinese Long) v2cmacuB334
CmaCh16G002680Melon (DHL92) v3.5.1cmameB306
CmaCh16G002680Watermelon (Charleston Gray)cmawcgB280
CmaCh16G002680Watermelon (97103) v1cmawmB293
CmaCh16G002680Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G002680Cucurbita pepo (Zucchini)cmacpeB346
CmaCh16G002680Cucurbita pepo (Zucchini)cmacpeB351
CmaCh16G002680Bottle gourd (USVL1VR-Ls)cmalsiB307
CmaCh16G002680Cucumber (Gy14) v2cgybcmaB495
CmaCh16G002680Melon (DHL92) v3.6.1cmamedB357
CmaCh16G002680Silver-seed gourdcarcmaB0406
CmaCh16G002680Silver-seed gourdcarcmaB0526
CmaCh16G002680Silver-seed gourdcarcmaB1207