CmaCh16G001330 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G001330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ADP-ribosylation factor-related 1
Location	Cma_Chr16 : 592683 .. 594380 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTTTATTTTATGGCCTCTGGAAGTACATATTTAGTAAGACAGAGTTTCATGTTCTCATCCTAGGAATTGACAAGGCGGGGAAAACAGTAATCCTCTTCCCTCTTGACTCATTAAGCTTAGTTATTTCCTCATATTTTCCATCCACTATTCTAGGCTTACTAACTTTTTGCTGCAGACTTTGCTTGAGAAGTTGAAGTCCTTATTCTCGAACTTAGAAGGTCTCTCCCCCGATCGGATTGTGCCAACCGTTGGACTCAATATTGGGCGGCTTGAGGTGTTGAACGCAAAACTTGTCTTCTGGGATCTGGGAGGTCAGGTATGTATAATGAGCAAAGGTCCTGTTATATAAAATCATGTATGCATATGTTATTTATCTTAGTTCGTCTTTTTCATCGTTTGAAATTATTTGCAGCCTGGCCTTCGGTCTATTTGGGAAAAATATTATGAAGAGGCACATGCTGTGATCTATGTAATTGATGCTGCTTGTCCATCAAAATTTGAAGATTCCAAATCTGCATTGGGTAGGTGATGATATAGGATGGCCATACGTTAATTACGTTGGTAGCTGCAGGGTTCTACTGCTGCAGGAACCACCTAAACTTGATGAATATGATGCATTGATATTGTTTTGGATTTCTTTCCTAGAGAAAGTTCTTCGACACGAGGATTTGCAAGGAGCTCCACTTTTGGTTTTCGCAAACAAGCAGGTCAGAACCACTTCCTTTTCTGCACACCTCTTTCCTAGAAGAGGAAAACTATATAGAACATGAAACTATGAACAATTCATTCATATATTGGGAAAATAATTCTTCTTTACATTTGATTTGGAGCTGTGGTATCATTGAATGCATGGATGCAGGATCTTCCTGAAGCTGTATCAGCGGAAGAACTTTCTCGTTATCTTGATCTTAAAAAATTGGATGAAAGAGTCTGCATGTTTGAAGCTGTTTCTGGCTATGATGGGTACGTGTATATAGCCAGTTTGTATCCATTCAAGTACTTGAAAATTGGTCTTCTGTTAGCCAGTTTATGCCTGTTTTTCATCCATTAAATTATCTTTTGCCACAGAAAAGCTGTTAGAAAATTGAAACTCTTCATTCTTTTGATCACAGGATGGGGATAAAGGAAAGTGTTGAATGGTTGGTGAATATAATGGAAAGAAGTAAGAGAACCGAAATATTGAGAGCTCGAGCAGGTGGGGCTGGTCTCGATTCTGCTTAGGTCGAATTTGAAACATTCTACATTCTTAAACTGCGTGGAACTTAGAAAATCAAGCTGAAACACTTCAATATTAGAGCCTATTGACTTTTGGTACTTACTGTGATGAATGTTTATCTCTCATTGACAGGTGTTAGAGGCCCCTAATTCGTTTTACATCCTCCTGTCTGAGAGCGTCAGCACAATCTGGCTTCCTGTTATCTAGCTTTACTGCAAAATGAAACATAATCTTGATTCAAGAGCTAGTTGGTAGCTTTAGAATTCCCACTCAAACTGTGAGTGTTTTCATAGGCATTCTTGGTTGATGACCATATTTCATACAAGTGGTCTGAATTTTGTCACCATTAAGTCTTATAAAGTTGTTACATTTCGAAGCTGGCAGTATTTGTTATTGTGAATGGATTGAAAAATGAACATCATCGGACTTGAGCTCTGCTCGAAGTATCCATTAAAAAAACGCTGCATACTTGACG

mRNA sequence

ATGTTCTCTTTATTTTATGGCCTCTGGAAGTACATATTTAGTAAGACAGAGTTTCATGTTCTCATCCTAGGAATTGACAAGGCGGGGAAAACAACTTTGCTTGAGAAGTTGAAGTCCTTATTCTCGAACTTAGAAGGTCTCTCCCCCGATCGGATTGTGCCAACCGTTGGACTCAATATTGGGCGGCTTGAGGTGTTGAACGCAAAACTTGTCTTCTGGGATCTGGGAGGTCAGCCTGGCCTTCGGTCTATTTGGGAAAAATATTATGAAGAGGCACATGCTGTGATCTATGTAATTGATGCTGCTTGTCCATCAAAATTTGAAGATTCCAAATCTGCATTGGAGAAAGTTCTTCGACACGAGGATTTGCAAGGAGCTCCACTTTTGGTTTTCGCAAACAAGCAGGATCTTCCTGAAGCTGTATCAGCGGAAGAACTTTCTCGTTATCTTGATCTTAAAAAATTGGATGAAAGAGTCTGCATGTTTGAAGCTGTTTCTGGCTATGATGGGATGGGGATAAAGGAAAGTGTTGAATGGTTGGTGAATATAATGGAAAGAAGTAAGAGAACCGAAATATTGAGAGCTCGAGCAGGTGTTAGAGGCCCCTAATTCGTTTTACATCCTCCTGTCTGAGAGCGTCAGCACAATCTGGCTTCCTGTTATCTAGCTTTACTGCAAAATGAAACATAATCTTGATTCAAGAGCTAGTTGGTAGCTTTAGAATTCCCACTCAAACTGTGAGTGTTTTCATAGGCATTCTTGGTTGATGACCATATTTCATACAAGTGGTCTGAATTTTGTCACCATTAAGTCTTATAAAGTTGTTACATTTCGAAGCTGGCAGTATTTGTTATTGTGAATGGATTGAAAAATGAACATCATCGGACTTGAGCTCTGCTCGAAGTATCCATTAAAAAAACGCTGCATACTTGACG

Coding sequence (CDS)

ATGTTCTCTTTATTTTATGGCCTCTGGAAGTACATATTTAGTAAGACAGAGTTTCATGTTCTCATCCTAGGAATTGACAAGGCGGGGAAAACAACTTTGCTTGAGAAGTTGAAGTCCTTATTCTCGAACTTAGAAGGTCTCTCCCCCGATCGGATTGTGCCAACCGTTGGACTCAATATTGGGCGGCTTGAGGTGTTGAACGCAAAACTTGTCTTCTGGGATCTGGGAGGTCAGCCTGGCCTTCGGTCTATTTGGGAAAAATATTATGAAGAGGCACATGCTGTGATCTATGTAATTGATGCTGCTTGTCCATCAAAATTTGAAGATTCCAAATCTGCATTGGAGAAAGTTCTTCGACACGAGGATTTGCAAGGAGCTCCACTTTTGGTTTTCGCAAACAAGCAGGATCTTCCTGAAGCTGTATCAGCGGAAGAACTTTCTCGTTATCTTGATCTTAAAAAATTGGATGAAAGAGTCTGCATGTTTGAAGCTGTTTCTGGCTATGATGGGATGGGGATAAAGGAAAGTGTTGAATGGTTGGTGAATATAATGGAAAGAAGTAAGAGAACCGAAATATTGAGAGCTCGAGCAGGTGTTAGAGGCCCCTAA

Protein sequence

MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNIGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRHEDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWLVNIMERSKRTEILRARAGVRGP

Homology

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BLAST of CmaCh16G001330 vs. Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-44
Identity = 89/190 (46.84%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFS-NLEGLSPDRIVPTVGLN 60
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ F+ N +G+S  +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 61  IGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLR 120
           IG ++V  A+L+FWDLGGQ  L+S+W+KYY E H VIYVID+    +  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120

Query: 121 HEDLQGAPLLVFANKQDLPEAVSAEEL-SRYLDLK-KLDERVCMFEAVSGYDGMGIKESV 180
            E L G P+LV ANKQD+   +S  ++ + + D   K+  R C+ +A S   G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGI 180

Query: 181 EWLVNIMERS 188
           EW+V  + R+
Sbjct: 181 EWMVKCVVRN 190

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BLAST of CmaCh16G001330 vs. Swiss-Prot
Match: ARFRP_BOVIN (ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-44
Identity = 88/190 (46.32%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFS-NLEGLSPDRIVPTVGLN 60
           M++L  GL+KY+F K E+ VLILG+D AGKTT LE+ K+ F+ N +G+S  +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCVLILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 61  IGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLR 120
           IG ++V  A+L+FWDLGGQ  L+S+W+KYY E H VIYVID+    +  +SK A EK++ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKQAFEKMVT 120

Query: 121 HEDLQGAPLLVFANKQDLPEAVSAEELSRYLD--LKKLDERVCMFEAVSGYDGMGIKESV 180
            E L G P+LV ANKQD+   +S  ++         K+  R C+ +A S   G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCASKIGRRDCLTQACSALTGKGVREGI 180

Query: 181 EWLVNIMERS 188
           EW+V  + R+
Sbjct: 181 EWMVKCVVRN 190

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BLAST of CmaCh16G001330 vs. Swiss-Prot
Match: ARFRP_RAT (ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-44
Identity = 89/190 (46.84%), Postives = 129/190 (67.89%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFS-NLEGLSPDRIVPTVGLN 60
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ F+ N +G+S  +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 61  IGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLR 120
           IG ++V  A+L+FWDLGGQ  L+S+W+KYY E H VIYVID+    +  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVS 120

Query: 121 HEDLQGAPLLVFANKQDLPEAVSAEEL-SRYLDLK-KLDERVCMFEAVSGYDGMGIKESV 180
            E L G P+LV ANKQD+   +S  ++ + + D   K+  R C+ +A S   G G++E +
Sbjct: 121 SEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIGRRDCLTQACSALTGKGVREGI 180

Query: 181 EWLVNIMERS 188
           EW+V  + R+
Sbjct: 181 EWMVKCVVRN 190

[Close]

BLAST of CmaCh16G001330 vs. Swiss-Prot
Match: ARFRP_PONAB (ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.2e-44
Identity = 88/190 (46.32%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFS-NLEGLSPDRIVPTVGLN 60
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ F+ N +G+S  +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 61  IGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLR 120
           IG ++V  A+L+FWDLGGQ  L+S+W+KYY E H VIYVID+    +  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120

Query: 121 HEDLQGAPLLVFANKQDLPEAVSAEELSRYLD--LKKLDERVCMFEAVSGYDGMGIKESV 180
            E L G P+LV ANKQD+   +S  ++         K+  R C+ +A S   G G++E +
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGI 180

Query: 181 EWLVNIMERS 188
           EW+V  + R+
Sbjct: 181 EWMVKCVVRN 190

[Close]

BLAST of CmaCh16G001330 vs. Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.2e-44
Identity = 88/190 (46.32%), Postives = 126/190 (66.32%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFS-NLEGLSPDRIVPTVGLN 60
           M++L  GL+KY+F K E+ +LILG+D AGKTT LE+ K+ F+ N +G+S  +I  TVGLN
Sbjct: 1   MYTLLSGLYKYMFQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTVGLN 60

Query: 61  IGRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLR 120
           IG ++V  A+L+FWDLGGQ  L+S+W+KYY E H VIYVID+    +  +SK A EKV+ 
Sbjct: 61  IGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVT 120

Query: 121 HEDLQGAPLLVFANKQDLPEAVSAEELSRYLD--LKKLDERVCMFEAVSGYDGMGIKESV 180
            E L G P+LV ANKQD+   +S  ++         K+  R C+ +A S   G G++E +
Sbjct: 121 SEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGI 180

Query: 181 EWLVNIMERS 188
           EW+V  + R+
Sbjct: 181 EWMVKCVVRN 190

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BLAST of CmaCh16G001330 vs. TrEMBL
Match: A0A0A0L9R1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181980 PE=3 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.1e-106
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKY+FSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGLSPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLLV ANKQDLPEAVSAEELSRYLDLKKLDERV MFEAVSGYDGMGIK+SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V+IMERSKRTEILRARAGVRGP
Sbjct: 181 VDIMERSKRTEILRARAGVRGP 202

[Close]

BLAST of CmaCh16G001330 vs. TrEMBL
Match: A0A067JEK0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26132 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.6e-99
Identity = 178/202 (88.12%), Postives = 191/202 (94.55%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLPPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GR+EV N KLVFWDLGGQPGLRSIWEKYYEEAHAVI++IDA CPS+FEDSKSALEKVLRH
Sbjct: 61  GRIEVSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIFIIDATCPSRFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLL+ ANKQDLP+A SAEE++RYLDLKKLDERV MFEAVS YDGMGIKES++WL
Sbjct: 121 EDLQGAPLLILANKQDLPDAASAEEIARYLDLKKLDERVYMFEAVSAYDGMGIKESIQWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V +MERSKRTE+LR RAGV GP
Sbjct: 181 VEVMERSKRTEMLRVRAGVTGP 202

[Close]

BLAST of CmaCh16G001330 vs. TrEMBL
Match: A9PIP7_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.3e-99
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKS+ SNLEGL PDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSVHSNLEGLPPDRIIPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPS+FED+KSALEKVLRH
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDAKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           +DLQGAPLL+ ANKQDL +A SAEEL+RYLDLKKLDERV +FEAVS YDGMGIKESVEWL
Sbjct: 121 DDLQGAPLLILANKQDLTDAASAEELARYLDLKKLDERVYIFEAVSAYDGMGIKESVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V +MERSKRTE+LRARAGV GP
Sbjct: 181 VEVMERSKRTEMLRARAGVTGP 202

[Close]

BLAST of CmaCh16G001330 vs. TrEMBL
Match: B9I4B8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13470g PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.3e-99
Identity = 179/202 (88.61%), Postives = 192/202 (95.05%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKS+ SNLEGL PDRI+PTVGLNI
Sbjct: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSVHSNLEGLPPDRIIPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPS+FED+KSALEKVLRH
Sbjct: 61  GRIEVANSKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSRFEDAKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           +DLQGAPLL+ ANKQDL +A SAEEL+RYLDLKKLDERV +FEAVS YDGMGIKESVEWL
Sbjct: 121 DDLQGAPLLILANKQDLTDAASAEELARYLDLKKLDERVYIFEAVSAYDGMGIKESVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V +MERSKRTE+LRARAGV GP
Sbjct: 181 VEVMERSKRTEMLRARAGVTGP 202

[Close]

BLAST of CmaCh16G001330 vs. TrEMBL
Match: V4S486_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005906mg PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.1e-98
Identity = 176/198 (88.89%), Postives = 193/198 (97.47%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKYIF+KTEFHVLILGIDKAGKTTLLEKLKS++SN+EGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GR+EV N+KLVFWDLGGQPGLRSIWEKYYEEAHAV++VIDAACPS+FEDSK+ALEKVLR+
Sbjct: 61  GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALEKVLRN 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLL+ ANKQDLP+AVSA+EL+RYLDLKKLDERVCMFEAVSGYDG GIKESVEWL
Sbjct: 121 EDLQGAPLLILANKQDLPDAVSADELARYLDLKKLDERVCMFEAVSGYDGFGIKESVEWL 180

Query: 181 VNIMERSKRTEILRARAG 199
           V +MERSKRTE+LRARAG
Sbjct: 181 VEVMERSKRTEMLRARAG 198

[Close]

BLAST of CmaCh16G001330 vs. TAIR10
Match: AT5G52210.1 (AT5G52210.1 GTP-binding protein 1)

HSP 1 Score: 337.4 bits (864), Expect = 6.0e-93
Identity = 165/198 (83.33%), Postives = 180/198 (90.91%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSL  GLW Y+FSKTEF+VLILGIDKAGKTT LEKLK+++S  EGL  DRIVPTVGLNI
Sbjct: 1   MFSLMSGLWSYMFSKTEFNVLILGIDKAGKTTFLEKLKTIYSISEGLPHDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GR+EV NAK+VFWDLGGQPGLRSIWEKYYEEAHA+IY+IDAACP++FEDSKSALEK LRH
Sbjct: 61  GRIEVSNAKIVFWDLGGQPGLRSIWEKYYEEAHALIYLIDAACPTRFEDSKSALEKALRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLL+ ANKQDL  AVSAEEL RYLDLKKLDERV MFEAVSGYDG GIKES+EWL
Sbjct: 121 EDLQGAPLLILANKQDLTNAVSAEELDRYLDLKKLDERVYMFEAVSGYDGRGIKESIEWL 180

Query: 181 VNIMERSKRTEILRARAG 199
           V +ME+SKRTE LRARAG
Sbjct: 181 VGVMEKSKRTESLRARAG 198

[Close]

BLAST of CmaCh16G001330 vs. TAIR10
Match: AT5G14670.1 (AT5G14670.1 ADP-ribosylation factor A1B)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 1


Query: 5   FYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLK--SLFSNLEGLSPDRIVPTVGLNIGR 64
           F  L+  +F+K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+  
Sbjct: 5   FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVET 64

Query: 65  LEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRHED 124
           +E  N     WD+GGQ  +R +W  Y++    +I+V+D+    +  +++  L ++L  ++
Sbjct: 65  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 124

Query: 125 LQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWLVN 183
           L+ A LLVFANKQDLP A++A E++  L L  L +R    ++     G G+ E ++WL N
Sbjct: 125 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175

[Close]

BLAST of CmaCh16G001330 vs. TAIR10
Match: AT1G23490.1 (AT1G23490.1 ADP-ribosylation factor 1)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 1


Query: 5   FYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLK--SLFSNLEGLSPDRIVPTVGLNIGR 64
           F  L+  +F+K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+  
Sbjct: 5   FAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVET 64

Query: 65  LEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRHED 124
           +E  N     WD+GGQ  +R +W  Y++    +I+V+D+    +  +++  L ++L  ++
Sbjct: 65  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 124

Query: 125 LQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWLVN 183
           L+ A LLVFANKQDLP A++A E++  L L  L +R    ++     G G+ E ++WL N
Sbjct: 125 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175

[Close]

BLAST of CmaCh16G001330 vs. TAIR10
Match: AT1G10630.1 (AT1G10630.1 ADP-ribosylation factor A1F)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 1


Query: 5   FYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLK--SLFSNLEGLSPDRIVPTVGLNIGR 64
           F  L+  +F+K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+  
Sbjct: 5   FAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVET 64

Query: 65  LEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRHED 124
           +E  N     WD+GGQ  +R +W  Y++    +I+V+D+    +  +++  L ++L  ++
Sbjct: 65  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 124

Query: 125 LQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWLVN 183
           L+ A LLVFANKQDLP A++A E++  L L  L +R    ++     G G+ E ++WL N
Sbjct: 125 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175

[Close]

BLAST of CmaCh16G001330 vs. TAIR10
Match: AT1G70490.1 (AT1G70490.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 1


Query: 5   FYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLK--SLFSNLEGLSPDRIVPTVGLNIGR 64
           F  L+  +F+K E  +L++G+D AGKTT+L KLK   + +          +PT+G N+  
Sbjct: 5   FAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---------IPTIGFNVET 64

Query: 65  LEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRHED 124
           +E  N     WD+GGQ  +R +W  Y++    +I+V+D+    +  +++  L ++L  ++
Sbjct: 65  VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 124

Query: 125 LQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWLVN 183
           L+ A LLVFANKQDLP A++A E++  L L  L +R    ++     G G+ E ++WL N
Sbjct: 125 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175

[Close]

BLAST of CmaCh16G001330 vs. NCBI nr
Match: gi|449446039|ref|XP_004140779.1| (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 394.0 bits (1011), Expect = 1.5e-106
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKY+FSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGLSPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLLV ANKQDLPEAVSAEELSRYLDLKKLDERV MFEAVSGYDGMGIK+SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V+IMERSKRTEILRARAGVRGP
Sbjct: 181 VDIMERSKRTEILRARAGVRGP 202

[Close]

BLAST of CmaCh16G001330 vs. NCBI nr
Match: gi|659077424|ref|XP_008439196.1| (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 391.0 bits (1003), Expect = 1.3e-105
Identity = 195/202 (96.53%), Postives = 198/202 (98.02%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKY+FSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGLSPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLLV ANKQDLPEAVSAEELSRYLDLKKLDERV MFEAVSGYDGMGIK SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKNSVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V+IMERSKRTEILRARAGVR P
Sbjct: 181 VDIMERSKRTEILRARAGVRSP 202

[Close]

BLAST of CmaCh16G001330 vs. NCBI nr
Match: gi|449446037|ref|XP_004140778.1| (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 3.2e-104
Identity = 193/201 (96.02%), Postives = 197/201 (98.01%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKY+FSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGLSPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLLV ANKQDLPEAVSAEELSRYLDLKKLDERV MFEAVSGYDGMGIK+SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKDSVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRG 202
           V+IMERSKRTEILRARAG  G
Sbjct: 181 VDIMERSKRTEILRARAGGAG 201

[Close]

BLAST of CmaCh16G001330 vs. NCBI nr
Match: gi|659077420|ref|XP_008439194.1| (PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 385.6 bits (989), Expect = 5.4e-104
Identity = 193/201 (96.02%), Postives = 196/201 (97.51%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKY+FSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGLSPDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYLFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLSPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH
Sbjct: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLLV ANKQDLPEAVSAEELSRYLDLKKLDERV MFEAVSGYDGMGIK SVEWL
Sbjct: 121 EDLQGAPLLVLANKQDLPEAVSAEELSRYLDLKKLDERVYMFEAVSGYDGMGIKNSVEWL 180

Query: 181 VNIMERSKRTEILRARAGVRG 202
           V+IMERSKRTEILRARAG  G
Sbjct: 181 VDIMERSKRTEILRARAGGAG 201

[Close]

BLAST of CmaCh16G001330 vs. NCBI nr
Match: gi|802769162|ref|XP_012090279.1| (PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas])

HSP 1 Score: 370.2 bits (949), Expect = 2.4e-99
Identity = 178/202 (88.12%), Postives = 191/202 (94.55%), Query Frame = 1


Query: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLFSNLEGLSPDRIVPTVGLNI 60
           MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSL+SNLEGL PDRIVPTVGLNI
Sbjct: 1   MFSLFYGLWKYIFSKTEFHVLILGIDKAGKTTLLEKLKSLYSNLEGLPPDRIVPTVGLNI 60

Query: 61  GRLEVLNAKLVFWDLGGQPGLRSIWEKYYEEAHAVIYVIDAACPSKFEDSKSALEKVLRH 120
           GR+EV N KLVFWDLGGQPGLRSIWEKYYEEAHAVI++IDA CPS+FEDSKSALEKVLRH
Sbjct: 61  GRIEVSNTKLVFWDLGGQPGLRSIWEKYYEEAHAVIFIIDATCPSRFEDSKSALEKVLRH 120

Query: 121 EDLQGAPLLVFANKQDLPEAVSAEELSRYLDLKKLDERVCMFEAVSGYDGMGIKESVEWL 180
           EDLQGAPLL+ ANKQDLP+A SAEE++RYLDLKKLDERV MFEAVS YDGMGIKES++WL
Sbjct: 121 EDLQGAPLLILANKQDLPDAASAEEIARYLDLKKLDERVYMFEAVSAYDGMGIKESIQWL 180

Query: 181 VNIMERSKRTEILRARAGVRGP 203
           V +MERSKRTE+LR RAGV GP
Sbjct: 181 VEVMERSKRTEMLRVRAGVTGP 202

The following BLAST results are available for this feature:

BLAST of CmaCh16G001330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARFRP_MOUSE	3.7e-44	46.84	ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=1 SV=2	[more]
ARFRP_BOVIN	3.7e-44	46.32	ADP-ribosylation factor-related protein 1 OS=Bos taurus GN=ARFRP1 PE=2 SV=1	[more]
ARFRP_RAT	3.7e-44	46.84	ADP-ribosylation factor-related protein 1 OS=Rattus norvegicus GN=Arfrp1 PE=2 SV...	[more]
ARFRP_PONAB	8.2e-44	46.32	ADP-ribosylation factor-related protein 1 OS=Pongo abelii GN=ARFRP1 PE=2 SV=1	[more]
ARFRP_HUMAN	8.2e-44	46.32	ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1	[more]

BLAST of CmaCh16G001330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9R1_CUCSA	1.1e-106	97.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G181980 PE=3 SV=1	[more]
A0A067JEK0_JATCU	1.6e-99	88.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26132 PE=3 SV=1	[more]
A9PIP7_9ROSI	6.3e-99	88.61	Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2...	[more]
B9I4B8_POPTR	6.3e-99	88.61	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13470g PE=3 SV=1	[more]
V4S486_9ROSI	1.1e-98	88.89	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005906mg PE=3 SV=1	[more]

BLAST of CmaCh16G001330 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52210.1	6.0e-93	83.33	GTP-binding protein 1	[more]
AT5G14670.1	2.7e-29	34.44	ADP-ribosylation factor A1B	[more]
AT1G23490.1	2.7e-29	34.44	ADP-ribosylation factor 1	[more]
AT1G10630.1	2.7e-29	34.44	ADP-ribosylation factor A1F	[more]
AT1G70490.1	2.7e-29	34.44	Ras-related small GTP-binding family protein	[more]

BLAST of CmaCh16G001330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446039\|ref\|XP_004140779.1\|	1.5e-106	97.03	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis sativus...	[more]
gi\|659077424\|ref\|XP_008439196.1\|	1.3e-105	96.53	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X2 [Cucumis melo]	[more]
gi\|449446037\|ref\|XP_004140778.1\|	3.2e-104	96.02	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis sativus...	[more]
gi\|659077420\|ref\|XP_008439194.1\|	5.4e-104	96.02	PREDICTED: ADP-ribosylation factor-related protein 1 isoform X1 [Cucumis melo]	[more]
gi\|802769162\|ref\|XP_012090279.1\|	2.4e-99	88.12	PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005225	Small_GTP-bd_dom
IPR006689	Small_GTPase_ARF/SAR
IPR024156	Small_GTPase_ARF
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001330.1	CmaCh16G001330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 17..147 score: 1.8
IPR006689	Small GTPase superfamily, ARF/SAR type	PRINTS	PR00328	SAR1GTPBP	coord: 19..42 score: 9.6E-10coord: 126..147 score: 9.6
IPR006689	Small GTPase superfamily, ARF/SAR type	PFAM	PF00025	Arf	coord: 12..182 score: 1.2
IPR024156	Small GTPase superfamily, ARF type	PROFILE	PS51417	ARF	coord: 11..184 score: 19
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..184 score: 3.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..186 score: 4.32
None	No IPR available	PANTHER	PTHR11711	ADP RIBOSYLATION FACTOR-RELATED	coord: 1..193 score: 1.4E
None	No IPR available	PANTHER	PTHR11711:SF187	SUBFAMILY NOT NAMED	coord: 1..193 score: 1.4E
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 18..187 score: 4.
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..188 score: 2.6
None	No IPR available	SMART	SM00178	sar_sub_1	coord: 2..200 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G001330	Cucsa.107650	Cucumber (Gy14) v1	cgycmaB0248
CmaCh16G001330	Cla006191	Watermelon (97103) v1	cmawmB316
CmaCh16G001330	Csa3G181980	Cucumber (Chinese Long) v2	cmacuB329
CmaCh16G001330	MELO3C006896	Melon (DHL92) v3.5.1	cmameB296
CmaCh16G001330	ClCG05G007950	Watermelon (Charleston Gray)	cmawcgB296
CmaCh16G001330	CSPI03G16820	Wild cucumber (PI 183967)	cmacpiB335
CmaCh16G001330	CmoCh18G012630	Cucurbita moschata (Rifu)	cmacmoB327
CmaCh16G001330	CmoCh16G001370	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G001330	Lsi05G012400	Bottle gourd (USVL1VR-Ls)	cmalsiB312
CmaCh16G001330	Cp4.1LG09g00960	Cucurbita pepo (Zucchini)	cmacpeB339
CmaCh16G001330	Cp4.1LG14g06000	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G001330	CsaV3_3G016990	Cucumber (Chinese Long) v3	cmacucB0383
CmaCh16G001330	Cla97C05G089960	Watermelon (97103) v2	cmawmbB346
CmaCh16G001330	Bhi01G000973	Wax gourd	cmawgoB0433
CmaCh16G001330	CsGy3G016900	Cucumber (Gy14) v2	cgybcmaB342
CmaCh16G001330	Carg15138	Silver-seed gourd	carcmaB1366
CmaCh16G001330	Carg22092	Silver-seed gourd	carcmaB1031

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh16G001330	CmaCh18G012400	Cucurbita maxima (Rimu)	cmacmaB338

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G001330	Melon (DHL92) v3.6.1	cmamedB338
CmaCh16G001330	Melon (DHL92) v3.6.1	cmamedB344
CmaCh16G001330	Silver-seed gourd	carcmaB0994
CmaCh16G001330	Silver-seed gourd	carcmaB1264
CmaCh16G001330	Cucumber (Chinese Long) v3	cmacucB0376
CmaCh16G001330	Cucumber (Chinese Long) v3	cmacucB0406
CmaCh16G001330	Watermelon (97103) v2	cmawmbB330
CmaCh16G001330	Watermelon (97103) v2	cmawmbB344
CmaCh16G001330	Wax gourd	cmawgoB0429
CmaCh16G001330	Cucurbita maxima (Rimu)	cmacmaB345
CmaCh16G001330	Cucurbita maxima (Rimu)	cmacmaB346
CmaCh16G001330	Cucurbita maxima (Rimu)	cmacmaB359
CmaCh16G001330	Cucumber (Gy14) v1	cgycmaB0832
CmaCh16G001330	Cucurbita moschata (Rifu)	cmacmoB333
CmaCh16G001330	Wild cucumber (PI 183967)	cmacpiB348
CmaCh16G001330	Cucumber (Chinese Long) v2	cmacuB344
CmaCh16G001330	Melon (DHL92) v3.5.1	cmameB285
CmaCh16G001330	Watermelon (Charleston Gray)	cmawcgB292
CmaCh16G001330	Watermelon (97103) v1	cmawmB320
CmaCh16G001330	Cucurbita pepo (Zucchini)	cmacpeB358
CmaCh16G001330	Cucurbita pepo (Zucchini)	cmacpeB361
CmaCh16G001330	Bottle gourd (USVL1VR-Ls)	cmalsiB302
CmaCh16G001330	Bottle gourd (USVL1VR-Ls)	cmalsiB320
CmaCh16G001330	Cucumber (Gy14) v2	cgybcmaB621