CmaCh15G008450 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G008450
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCma_Chr15 : 4278755 .. 4279174 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAACACCACAGCATGTTGCCATCGACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAACAATCTTGGGAAGATAATTTTTGGGCTTGCTTTCCAGGCAGCTCTGGCTCTGTTCATCAGCACACCCACCTCATTTCCTCCACTTTTGATAAATCTCTTTGCAGCGGCTATGTTGATTAGCTTTACACTTTCACTTGCTGCGCTTTTTCTTCAAACTTCCTTCCCAAGAATCTCGCTTTTGTTCGGCAAGATCGGTGCTATGCTAGCTGCTGTTGGTGCGTGCATCATAGCTAGTCTTCTTCTGAAGCATCAGAATTTTAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTCATGGCCTTCGTTCTATCATTCAAGTGA

mRNA sequence

ATGGGATCAACACCACAGCATGTTGCCATCGACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAACAATCTTGGGAAGATAATTTTTGGGCTTGCTTTCCAGGCAGCTCTGGCTCTGTTCATCAGCACACCCACCTCATTTCCTCCACTTTTGATAAATCTCTTTGCAGCGGCTATGTTGATTAGCTTTACACTTTCACTTGCTGCGCTTTTTCTTCAAACTTCCTTCCCAAGAATCTCGCTTTTGTTCGGCAAGATCGGTGCTATGCTAGCTGCTGTTGGTGCGTGCATCATAGCTAGTCTTCTTCTGAAGCATCAGAATTTTAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTCATGGCCTTCGTTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGGGATCAACACCACAGCATGTTGCCATCGACATGAATCAATTCTCTTCTACCCAGGGAGCCTCAGATGGGTTACCCAGGGAGCCTCAGGCTCGCAACAATCTTGGGAAGATAATTTTTGGGCTTGCTTTCCAGGCAGCTCTGGCTCTGTTCATCAGCACACCCACCTCATTTCCTCCACTTTTGATAAATCTCTTTGCAGCGGCTATGTTGATTAGCTTTACACTTTCACTTGCTGCGCTTTTTCTTCAAACTTCCTTCCCAAGAATCTCGCTTTTGTTCGGCAAGATCGGTGCTATGCTAGCTGCTGTTGGTGCGTGCATCATAGCTAGTCTTCTTCTGAAGCATCAGAATTTTAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTCATGGCCTTCGTTCTATCATTCAAGTGA

Protein sequence

MGSTPQHVAIDMNQFSSTQGASDGLPREPQARNNLGKIIFGLAFQAALALFISTPTSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLFGKIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK
Homology
[Close]
BLAST of CmaCh15G008450 vs. TrEMBL
Match: A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.3e-30
Identity = 81/157 (51.59%), Postives = 103/157 (65.61%), Query Frame = 1 

Query: 1   MGSTPQHVAIDMNQFSST-------QGASDGLP-----------REPQARNNLGKIIFGL 60
           M S+ Q ++IDMN   S            +GLP              +  NN+G  I GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  AFQAALALFISTPTSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLFGKIGAMLA 120
            FQA LALFI++ TS PPLL +LF AA+LISF +S   +FLQ  FPRI+LLF KIGA++A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           A+G CI+ASLL+ HQNF+WI WLACGF+ MAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of CmaCh15G008450 vs. TrEMBL
Match: A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 82/164 (50.00%), Postives = 100/164 (60.98%), Query Frame = 1 

Query: 1   MGSTPQHVAIDMNQFSSTQGA--------------SDGLP------REPQAR----NNLG 60
           M ST    ++DM+ FSS                  S+ LP      + PQA       LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KIIFGLAFQAALALFISTP-TSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLFG 120
           KII  L+FQA LALFIS+P TS PPLLI+ FAAA+ ISF +S AALFL  SFPR + LF 
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           K+GA+ +A G C IAS LL HQNF+WI W+AC F+ + F LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of CmaCh15G008450 vs. TrEMBL
Match: A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-15
Identity = 68/165 (41.21%), Postives = 87/165 (52.73%), Query Frame = 1 

Query: 1   MGSTPQH-VAIDMNQFSS---------------TQG--ASDGLP-----REPQARNN--L 60
           M  TP H +++DMN+ +S               T G  ASD LP     + P   N+   
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60

Query: 61  GKIIFGLAFQAALALFIS-TPTSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLF 120
           G     L FQA + LF+S  P+S  PL   LFAA ML SF  S   + LQ  FP+ + L 
Sbjct: 61  GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120

Query: 121 GKIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
              GA+ AA+G CII SLLL + NF+WI WLA G    AF++SFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of CmaCh15G008450 vs. TrEMBL
Match: A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.0e-08
Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = 1 

Query: 28  EPQARNNLGKIIFGLAFQ--AALALFISTPTSFPPLLINLFAAAMLISFTLSLAALFLQT 87
           +P+   +LGK I  L+FQ   ALAL  S   +   L I++   +M+++F  S + +FL++
Sbjct: 95  QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFSGIFLRS 154

Query: 88  SFPRISLLFGKIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLS 138
           S+P+++ +   IG+++AAVG  I+ S+ L   N  W+ WLAC F+ +AF  S
Sbjct: 155 SYPKMANIIENIGSLIAAVGFFIMTSIFLP-GNLYWVTWLACAFSLLAFFSS 205

[Close]
BLAST of CmaCh15G008450 vs. NCBI nr
Match: gi|700194626|gb|KGN49803.1| (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 4.7e-30
Identity = 81/157 (51.59%), Postives = 103/157 (65.61%), Query Frame = 1 

Query: 1   MGSTPQHVAIDMNQFSST-------QGASDGLP-----------REPQARNNLGKIIFGL 60
           M S+ Q ++IDMN   S            +GLP              +  NN+G  I GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 61  AFQAALALFISTPTSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLFGKIGAMLA 120
            FQA LALFI++ TS PPLL +LF AA+LISF +S   +FLQ  FPRI+LLF KIGA++A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 121 AVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           A+G CI+ASLL+ HQNF+WI WLACGF+ MAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

[Close]
BLAST of CmaCh15G008450 vs. NCBI nr
Match: gi|700194631|gb|KGN49808.1| (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.4e-26
Identity = 82/164 (50.00%), Postives = 100/164 (60.98%), Query Frame = 1 

Query: 1   MGSTPQHVAIDMNQFSSTQGA--------------SDGLP------REPQAR----NNLG 60
           M ST    ++DM+ FSS                  S+ LP      + PQA       LG
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60

Query: 61  KIIFGLAFQAALALFISTP-TSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLFG 120
           KII  L+FQA LALFIS+P TS PPLLI+ FAAA+ ISF +S AALFL  SFPR + LF 
Sbjct: 61  KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120

Query: 121 KIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
           K+GA+ +A G C IAS LL HQNF+WI W+AC F+ + F LSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]
BLAST of CmaCh15G008450 vs. NCBI nr
Match: gi|700194629|gb|KGN49806.1| (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.5e-15
Identity = 68/165 (41.21%), Postives = 87/165 (52.73%), Query Frame = 1 

Query: 1   MGSTPQH-VAIDMNQFSS---------------TQG--ASDGLP-----REPQARNN--L 60
           M  TP H +++DMN+ +S               T G  ASD LP     + P   N+   
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQF 60

Query: 61  GKIIFGLAFQAALALFIS-TPTSFPPLLINLFAAAMLISFTLSLAALFLQTSFPRISLLF 120
           G     L FQA + LF+S  P+S  PL   LFAA ML SF  S   + LQ  FP+ + L 
Sbjct: 61  GNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLL 120

Query: 121 GKIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSFK 140
              GA+ AA+G CII SLLL + NF+WI WLA G    AF++SFK
Sbjct: 121 QTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

[Close]
BLAST of CmaCh15G008450 vs. NCBI nr
Match: gi|645277436|ref|XP_008243769.1| (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 65.9 bits (159), Expect = 6.6e-08
Identity = 42/119 (35.29%), Postives = 70/119 (58.82%), Query Frame = 1 

Query: 28  EPQARNNLGKIIFGLAFQAALALFISTPTSFPP--------LLINLFAAAMLISFTLSLA 87
           + +A  +LGK + GL FQA + L +++    P         L +++   AM+I+F    +
Sbjct: 92  QSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLPLHMVGVAMVIAFAACFS 151

Query: 88  ALFLQTSFPRISLLFGKIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLSF 139
           A+FL  ++PR + L  KIG++ AA+G  ++ S+ L +  F WI WLAC F+ +AF L+F
Sbjct: 152 AIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFLSN-IFIWICWLACAFSLLAFTLAF 209

[Close]
BLAST of CmaCh15G008450 vs. NCBI nr
Match: gi|590698393|ref|XP_007045702.1| (Ileal sodium/bile acid cotransporter, putative [Theobroma cacao])

HSP 1 Score: 65.5 bits (158), Expect = 8.6e-08
Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = 1 

Query: 28  EPQARNNLGKIIFGLAFQ--AALALFISTPTSFPPLLINLFAAAMLISFTLSLAALFLQT 87
           +P+   +LGK I  L+FQ   ALAL  S   +   L I++   +M+++F  S + +FL++
Sbjct: 95  QPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKISMIMAFAASFSGIFLRS 154

Query: 88  SFPRISLLFGKIGAMLAAVGACIIASLLLKHQNFSWIPWLACGFAFMAFVLS 138
           S+P+++ +   IG+++AAVG  I+ S+ L   N  W+ WLAC F+ +AF  S
Sbjct: 155 SYPKMANIIENIGSLIAAVGFFIMTSIFLP-GNLYWVTWLACAFSLLAFFSS 205

The following BLAST results are available for this feature:
BLAST of CmaCh15G008450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G008450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJN8_CUCSA3.3e-3051.59Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136870 PE=4 SV=1[more]
A0A0A0KJP2_CUCSA1.7e-2650.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ03_CUCSA3.9e-1541.21Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136900 PE=4 SV=1[more]
A0A061EGV0_THECC6.0e-0836.61Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao GN=TCM_011398 ... [more]
BLAST of CmaCh15G008450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G008450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194626|gb|KGN49803.1|4.7e-3051.59hypothetical protein Csa_5G136870 [Cucumis sativus][more]
gi|700194631|gb|KGN49808.1|2.4e-2650.00hypothetical protein Csa_5G137410 [Cucumis sativus][more]
gi|700194629|gb|KGN49806.1|5.5e-1541.21hypothetical protein Csa_5G136900 [Cucumis sativus][more]
gi|645277436|ref|XP_008243769.1|6.6e-0835.29PREDICTED: uncharacterized protein LOC103341994 [Prunus mume][more]
gi|590698393|ref|XP_007045702.1|8.6e-0836.61Ileal sodium/bile acid cotransporter, putative [Theobroma cacao][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G008450.1CmaCh15G008450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G008450CsGy5G012690Cucumber (Gy14) v2cgybcmaB612
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G008450Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G008450Cucurbita moschata (Rifu)cmacmoB309
CmaCh15G008450Wild cucumber (PI 183967)cmacpiB307
CmaCh15G008450Wild cucumber (PI 183967)cmacpiB308
CmaCh15G008450Cucumber (Chinese Long) v2cmacuB302
CmaCh15G008450Melon (DHL92) v3.5.1cmameB252
CmaCh15G008450Watermelon (Charleston Gray)cmawcgB260
CmaCh15G008450Watermelon (97103) v1cmawmB278
CmaCh15G008450Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G008450Cucurbita pepo (Zucchini)cmacpeB318
CmaCh15G008450Bottle gourd (USVL1VR-Ls)cmalsiB268
CmaCh15G008450Melon (DHL92) v3.6.1cmamedB286
CmaCh15G008450Silver-seed gourdcarcmaB0664
CmaCh15G008450Silver-seed gourdcarcmaB1148
CmaCh15G008450Cucumber (Chinese Long) v3cmacucB0356
CmaCh15G008450Watermelon (97103) v2cmawmbB289
CmaCh15G008450Wax gourdcmawgoB0376
CmaCh15G008450Cucurbita maxima (Rimu)cmacmaB325
CmaCh15G008450Cucumber (Gy14) v1cgycmaB1032