CmaCh15G005030 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G005030
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA binding protein
LocationCma_Chr15 : 2280831 .. 2281610 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCGCAAGGGGAAGAGAGCCAAAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTATCGATATCCCTCCGCCACCTCTTCTGCCCCACCGCCGCCGTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGAGGTTCTGGTGGTTTGGTTCCTTCGAAGTCTACTGTCTACGTTTCCAATTTCGACTATTCACTCACTAATTCCGATCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGCTGCGTTCGTCCAGTTTATTTCCCAGGACGACGCGGTCAAGACCGTGAAACAGATGCATGGGAAGATTTTGAATGGCCGTGCTCTGAAGGTTGCTATAGCGAATGATAATGGTCGTGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGACAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGACATTTGTCTTATGAGTGTCCTAAAAATCAATTGGGGCCAAGGGAGCGACCTGAACCGAAGCGGGTGAGAAAGGGCGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGATGGGGAAGGTTTTGAGGATGACAAATGGGCCTCAGTGGTGGACGGAGATGCAGACCAAAGACTGCTGACTAGTAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGGTGAAGATGAGTAA

mRNA sequence

ATGTCGCGCAAGGGGAAGAGAGCCAAAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTATCGATATCCCTCCGCCACCTCTTCTGCCCCACCGCCGCCGTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGAGGTTCTGGTGGTTTGGTTCCTTCGAAGTCTACTGTCTACGTTTCCAATTTCGACTATTCACTCACTAATTCCGATCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGCTGCGTTCGTCCAGTTTATTTCCCAGGACGACGCGGTCAAGACCGTGAAACAGATGCATGGGAAGATTTTGAATGGCCGTGCTCTGAAGGTTGCTATAGCGAATGATAATGGTCGTGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGACAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGACATTTGTCTTATGAGTGTCCTAAAAATCAATTGGGGCCAAGGGAGCGACCTGAACCGAAGCGGGTGAGAAAGGGCGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGATGGGGAAGGTTTTGAGGATGACAAATGGGCCTCAGTGGTGGACGGAGATGCAGACCAAAGACTGCTGACTAGTAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGGTGAAGATGAGTAA

Coding sequence (CDS)

ATGTCGCGCAAGGGGAAGAGAGCCAAAAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTATCGATATCCCTCCGCCACCTCTTCTGCCCCACCGCCGCCGTCGTCTTCACAGTCGCACTTCTCATCGCAATCGCACTCACACTCTTCCACCAAGTCCGGCGGAGGTTCTGGTGGTTTGGTTCCTTCGAAGTCTACTGTCTACGTTTCCAATTTCGACTATTCACTCACTAATTCCGATCTCCATACTCTCTTCTCCACCTTCGGTAAGATCGCTCGTGTTACGGTGTTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGCTGCGTTCGTCCAGTTTATTTCCCAGGACGACGCGGTCAAGACCGTGAAACAGATGCATGGGAAGATTTTGAATGGCCGTGCTCTGAAGGTTGCTATAGCGAATGATAATGGTCGTGCCGCTGAGTTTATAAGGAAGAGGGTTTATAAGGACAAGAGTAGGTGCTACGAGTGCGGCGCAGTTGATGGACATTTGTCTTATGAGTGTCCTAAAAATCAATTGGGGCCAAGGGAGCGACCTGAACCGAAGCGGGTGAGAAAGGGCGGAGTCGGTGCTAGGCACGAGGAGGATTGGGGATCGGATGATGGGGAAGGTTTTGAGGATGACAAATGGGCCTCAGTGGTGGACGGAGATGCAGACCAAAGACTGCTGACTAGTAGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAGCGAGTTATTTCAGTGACGAGAGTGGTGAAGATGAGTAA

Protein sequence

MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVVEKKKAKKASYFSDESGEDE
Homology
[Close]
BLAST of CmaCh15G005030 vs. Swiss-Prot
Match: U1131_ARATH (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.6e-70
Identity = 155/271 (57.20%), Postives = 190/271 (70.11%), Query Frame = 1 

Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+ K  +SD ++D+TFYYRY S    A PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSV---AAPPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRG AFV ++S++DA K  
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L V+IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEPKRVRKGGVGARHEEDWGSDD-------------GEGFEDDKWASVVDGDADQRL 245
           RERP P + R    G R EE+  +++              E FE++ WASVVD +A +RL
Sbjct: 182 RERPPPPKKR----GRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERL 241

Query: 246 LTSSENVVE----KKKAKKASYFSDESGEDE 260
                   E    K+K KK SYFSDES +++
Sbjct: 242 RKREAEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]
BLAST of CmaCh15G005030 vs. Swiss-Prot
Match: ZCRB1_XENLA (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laevis GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.4e-41
Identity = 99/215 (46.05%), Postives = 132/215 (61.40%), Query Frame = 1 

Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DLH +FS +GK+ +VT+LKD+ +RKS+G +FV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDK 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A   V+ ++ K L GRA+K +IA DNGRA EFIR+R Y DKSRCYECG   GHLSY C
Sbjct: 62  ESAQNCVRGLNNKQLFGRAIKASIAKDNGRATEFIRRRNYTDKSRCYECGDT-GHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSEN 238
           PKN LG RE P+ K  +K       EE+   ++ E  ED+     +D    Q +      
Sbjct: 122 PKNMLGEREPPQKKEKKKRKRLVEEEEEEVVEEEES-EDEGEDPALD-SLSQAIAFQQAR 181

Query: 239 VVEKK-------------------KAKKASYFSDE 255
           + E+K                   + KK++YFSDE
Sbjct: 182 IDEEKNKYRHDPAEASTSEDSRRPRIKKSTYFSDE 213

[Close]
BLAST of CmaCh15G005030 vs. Swiss-Prot
Match: ZCRB1_DANRE (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.9e-40
Identity = 101/213 (47.42%), Postives = 127/213 (59.62%), Query Frame = 1 

Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTNSD+H L S +GK+ +VT++KD+ TR S+G AFV F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A    + ++ K L GR +K +IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSEN 238
           PKN LG RE P  K  +K     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 239 VVEKKKA-----------------KKASYFSDE 255
              K+ A                 KK++YFSDE
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDE 213

[Close]
BLAST of CmaCh15G005030 vs. Swiss-Prot
Match: ZCRB1_HUMAN (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 3.2e-40
Identity = 97/212 (45.75%), Postives = 131/212 (61.79%), Query Frame = 1 

Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+G AF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A    + ++ K L GR +K +IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEE-----DWGSDDGEGFEDDKWASVV-----DGDA 238
           PKN LG RE P+ K  +K       EE     +   D+GE    D  +  +       + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 DQRLLTSSENV------VEKKKAKKASYFSDE 255
           +Q+    S  V        + + KK++YFSDE
Sbjct: 182 EQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDE 212

[Close]
BLAST of CmaCh15G005030 vs. Swiss-Prot
Match: ZCRB1_RAT (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-39
Identity = 98/219 (44.75%), Postives = 134/219 (61.19%), Query Frame = 1 

Query: 59  SGGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 118
           SGGL PSKSTVYVSN  +SLTN+DL+ +FS +GK+ +VT++KD+ TRKS+G AF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GR +K +IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRVRKGGVGARHEE-----DWGSDDGE-----------GFED----- 238
           PKN LG RE P+ K  +K       EE     +   ++GE            F+      
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 --DKWASVVDGDADQRLLTSSENVVEKKKAKKASYFSDE 255
             +KW     G +     TS ++   + + KK++YFSDE
Sbjct: 182 EQNKWRPSTGGPS-----TSDDS--RRPRIKKSAYFSDE 212

[Close]
BLAST of CmaCh15G005030 vs. TrEMBL
Match: A0A0D2TUZ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G310500 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 9.9e-81
Identity = 176/262 (67.18%), Postives = 198/262 (75.57%), Query Frame = 1 

Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           KR    NSDSD+DETFY+RY SA   APP  SSS  + ++      ST  GGGSGGL PS
Sbjct: 2   KRKSTKNSDSDEDETFYFRYSSAV--APPSSSSSNPNLATSK----STGGGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN DYSLTNSDLHTLFSTFGKIARVTVLKDR TR S+G AFVQF+S++DA+   
Sbjct: 62  KSTLYVSNLDYSLTNSDLHTLFSTFGKIARVTVLKDRATRNSKGVAFVQFVSREDALSAA 121

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
             MHGKILNGR L  +IA DNGRA EFI+KRVYKDKSRCYECGA  GHLSYECPKNQLGP
Sbjct: 122 SVMHGKILNGRTLSASIAVDNGRAPEFIKKRVYKDKSRCYECGA-GGHLSYECPKNQLGP 181

Query: 186 RERPEPKRVRKGGVGARHEE---DWG---SDDGEGFEDDKWASVVDGDADQRLLTSSENV 245
           RERP PK+ R+GG G    E   DWG   S+ GEGFE++ WASVVDG A++R L  SE  
Sbjct: 182 RERPVPKKGRRGGGGGEKREDGGDWGEEESEGGEGFEEENWASVVDGAAEER-LRKSEMA 241

Query: 246 VEKKK--AKKASYFSDESGEDE 260
            EKKK   +KASYFSDES E+E
Sbjct: 242 EEKKKKMTRKASYFSDESDEEE 255

[Close]
BLAST of CmaCh15G005030 vs. TrEMBL
Match: W9RLG6_9ROSA (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Morus notabilis GN=L484_017050 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 6.4e-80
Identity = 173/273 (63.37%), Postives = 201/273 (73.63%), Query Frame = 1 

Query: 2   SRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGG 61
           ++K  +  NP    DDD+TFYYRY SA  +A PP  +  +  +++ HS      GGGSG 
Sbjct: 95  NKKTTKKNNPTDSDDDDDTFYYRYASA--AANPPDGAGATTSAAKKHS----GGGGGSGT 154

Query: 62  LVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDA 121
           L PSKST+YVSN D++LTNSDLHTLFSTFGKIARV+VLKDR TR+SRG AFVQF+S+DDA
Sbjct: 155 LAPSKSTLYVSNIDFALTNSDLHTLFSTFGKIARVSVLKDRHTRQSRGVAFVQFVSRDDA 214

Query: 122 VKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKN 181
           V    QMHGK+LNGR L  +IA DNGR+AEFIRKRVY+DKSRCYECGA +GHLSYECPKN
Sbjct: 215 VFAASQMHGKVLNGRTLTASIAADNGRSAEFIRKRVYRDKSRCYECGA-EGHLSYECPKN 274

Query: 182 QLGPRERPEPKRVR-----KGGVGAR---------HEEDWGSDDGEGFEDDKWASVVDGD 241
           QLGPRERP PKR R      GG G R          +E+ G D GEGFE+D WASVVDG 
Sbjct: 275 QLGPRERPPPKRERGRGGGGGGGGGRGTNCWRENEQDEEIGPDGGEGFEEDNWASVVDGG 334

Query: 242 ADQRLLTS-SENVVEKKKAKKASYFSDESGEDE 260
           AD RLL S  +   EKK+ KKASYFSDESG+DE
Sbjct: 335 ADDRLLRSRGDGGQEKKRMKKASYFSDESGDDE 360

[Close]
BLAST of CmaCh15G005030 vs. TrEMBL
Match: A0A067KDZ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16159 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 5.1e-77
Identity = 166/249 (66.67%), Postives = 190/249 (76.31%), Query Frame = 1 

Query: 12  NSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYV 71
           +SDSD+DETFYYRY    SSAP PPSSS       S+         GS GL PSKST+YV
Sbjct: 6   HSDSDEDETFYYRY----SSAPQPPSSS-------SNPSKPNPKSNGSDGLAPSKSTLYV 65

Query: 72  SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQMHGK 131
           SN DYSLTNSDLHTLFSTFGKIARVTVLKDR +R+S+G AF+QF+S++DAV   +QM  K
Sbjct: 66  SNLDYSLTNSDLHTLFSTFGKIARVTVLKDRVSRQSKGVAFIQFVSRNDAVSAARQMDKK 125

Query: 132 ILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP 191
           ILNGR L  +IA DNGRA EFI+KRVYKDKSRCYECG  +GHLSYECP+NQLG RERP  
Sbjct: 126 ILNGRTLSASIAADNGRAPEFIKKRVYKDKSRCYECGE-NGHLSYECPRNQLGARERPVA 185

Query: 192 KRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENV-VEKKKAKKASY 251
           KR R  G   R EE+W  +DGE FE++ WASVVDGDAD+RLL+  E   VE+KK KKASY
Sbjct: 186 KRGRGDGGQGRREEEW--EDGEVFEEENWASVVDGDADERLLSRGEETKVERKKVKKASY 240

Query: 252 FSDESGEDE 260
           FSDES E+E
Sbjct: 246 FSDESDEEE 240

[Close]
BLAST of CmaCh15G005030 vs. TrEMBL
Match: A0A061FPI6_THECC (RNA recognition motif and CCHC-type zinc finger domains containing protein OS=Theobroma cacao GN=TCM_043293 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 6.6e-77
Identity = 174/263 (66.16%), Postives = 199/263 (75.67%), Query Frame = 1 

Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSS-TKSGGGSGGLVP 65
           KR    NSDS++DETFY+RY    SSA  PPSSS S  S+ + + S  T  GGGS GL P
Sbjct: 4   KRKSTSNSDSEEDETFYFRY----SSAAAPPSSSSSKPSNPNQTISKCTGGGGGSSGLAP 63

Query: 66  SKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKT 125
           SKST+YVSN DYSLTNSDLHTLFSTFGKIARVTVLKD  TR S+G AF+QF+S+DDA+  
Sbjct: 64  SKSTLYVSNIDYSLTNSDLHTLFSTFGKIARVTVLKDSVTRISKGVAFIQFVSRDDALSA 123

Query: 126 VKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLG 185
            + MHGK+LNGR L  +IA DNGRA EFIRKRVYKDKSRCYECG V GHLSYECPKNQLG
Sbjct: 124 ERVMHGKVLNGRTLSTSIAVDNGRAPEFIRKRVYKDKSRCYECG-VSGHLSYECPKNQLG 183

Query: 186 PRERPEPKRVRKG-GVGARHEE--DWGS---DDGEGFEDDKWASVVDGDADQRLLTSSEN 245
           PRERP  K+ R+G G G R E+  DW     D G GFE++ WASVVDG A++R L  +E 
Sbjct: 184 PRERPVSKKGRRGCGGGERREDNGDWSDEELDGGVGFEEENWASVVDGSAEER-LRKAEM 243

Query: 246 VVEKKK--AKKASYFSDESGEDE 260
           V EKKK  A+KASYFSDES E+E
Sbjct: 244 VEEKKKKVARKASYFSDESDEEE 260

[Close]
BLAST of CmaCh15G005030 vs. TrEMBL
Match: M5X019_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010566mg PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 6.6e-77
Identity = 166/258 (64.34%), Postives = 188/258 (72.87%), Query Frame = 1 

Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+ K  +SD D+DETFYYRY SA  +  P                ++ +SG GSG L PS
Sbjct: 4   KKKKKNSSDEDEDETFYYRYTSAPETRKP----------------ATKQSGSGSGTLAPS 63

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN DYSLTNSDLHTLFS FGKIARVTVLK+R+TR+SRG AFVQF+S+ DAV   
Sbjct: 64  KSTLYVSNLDYSLTNSDLHTLFSHFGKIARVTVLKNRETRQSRGVAFVQFVSRTDAVSAA 123

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
            +MHGKILNGR L  +IA+DNGRAAEFI+KR YKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 124 GEMHGKILNGRKLSASIASDNGRAAEFIKKREYKDKSRCYECGE-EGHLSYECPKNQLGP 183

Query: 186 RERPEPKRVRKGGVG------ARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENV 245
           RERP PKRVR+GG G      AR EE  G   GE FEDD WASVVD  ADQRLL   E  
Sbjct: 184 RERPPPKRVRRGGGGGGGSAAARVEEAEGDSGGERFEDDNWASVVDSGADQRLLVGEEME 243

Query: 246 VEKKK--AKKASYFSDES 256
            +K+K   KK+SYFSDES
Sbjct: 244 EKKRKKGVKKSSYFSDES 244

[Close]
BLAST of CmaCh15G005030 vs. TAIR10
Match: AT3G10400.1 (AT3G10400.1 RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 265.0 bits (676), Expect = 4.8e-71
Identity = 155/271 (57.20%), Postives = 190/271 (70.11%), Query Frame = 1 

Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           K+ K  +SD ++D+TFYYRY S    A PPPS+ +   SS   S  S+  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSV---AAPPPSNPKHQPSS---SAKSSAPGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN D+SLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRG AFV ++S++DA K  
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L V+IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEPKRVRKGGVGARHEEDWGSDD-------------GEGFEDDKWASVVDGDADQRL 245
           RERP P + R    G R EE+  +++              E FE++ WASVVD +A +RL
Sbjct: 182 RERPPPPKKR----GRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERL 241

Query: 246 LTSSENVVE----KKKAKKASYFSDESGEDE 260
                   E    K+K KK SYFSDES +++
Sbjct: 242 RKREAEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]
BLAST of CmaCh15G005030 vs. TAIR10
Match: AT3G23830.1 (AT3G23830.1 glycine-rich RNA-binding protein 4)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-11
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = 1 

Query: 60  GGLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQD 119
           G L    S ++V    +   +S L   F++FG++   TV+ DR+T +SRG  FV F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKTVKQMHGKILNGRALKVAIANDNGRA 150
            A   +K+M GK LNGR ++V +A +   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]
BLAST of CmaCh15G005030 vs. TAIR10
Match: AT4G20030.1 (AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 64  PSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVK 123
           P  S + V N  +S +   L   FS FG+IA V ++KD   ++S+G AF+QF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 124 TVKQMHGKILNGRALKVAIANDNGR 149
            ++ M  ++ NGR + + IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]
BLAST of CmaCh15G005030 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-10
Identity = 32/94 (34.04%), Postives = 56/94 (59.57%), Query Frame = 1 

Query: 69  VYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQM 128
           ++VS      T+  L  LFS FG+I    +++D +T++ +G  F+ F S+DDA K +K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 129 HGKILNGRALKVAIANDNGRAAEFIRKRVYKDKS 163
            GKI++GR + V +A +    AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVAKN----AEEVRAGINSNKA 98

[Close]
BLAST of CmaCh15G005030 vs. TAIR10
Match: AT5G64200.1 (AT5G64200.1 ortholog of human splicing factor SC35)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 50/192 (26.04%), Postives = 88/192 (45.83%), Query Frame = 1 

Query: 68  TVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQ 127
           ++ V N  +  T  DL+ LF+ +GK+  V + +DR+T  SRG AFV++  +D+A K V++
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 128 MHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRE 187
           + G++++GR + V  A     A +  + RV +   +     +     S   P+    P  
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRS-RSPRRSRSPPR 136

Query: 188 RPEPKRVRKGGVGARHEEDWGSDD----GEGFEDDKWASVVDGDADQRLLTSSENVVEKK 247
           R  P+R R      R  +D+   D          D+     + D D R  T S +    +
Sbjct: 137 RRSPRRSR--SPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDE 196

Query: 248 KAKKASYFSDES 256
           K +    + +ES
Sbjct: 197 KRRVRGRYDNES 205

[Close]
BLAST of CmaCh15G005030 vs. NCBI nr
Match: gi|659113349|ref|XP_008456528.1| (PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Cucumis melo])

HSP 1 Score: 461.5 bits (1186), Expect = 1.0e-126
Identity = 236/259 (91.12%), Postives = 242/259 (93.44%), Query Frame = 1 

Query: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60
           M+RKGK+  NP SDSD+DETFYYRYPSA SSAPP PSSSQSHFSSQSHSHSSTKSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120
           GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AFVQFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240
           NQLGPRERPEPKR R+GGVGARHEEDWGSD GE FEDD WASVVDGDADQRLLT  EN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKASYFSDESGEDE 260
           EKKKAKKASYFSDESGED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]
BLAST of CmaCh15G005030 vs. NCBI nr
Match: gi|823229932|ref|XP_012447703.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Gossypium raimondii])

HSP 1 Score: 308.1 bits (788), Expect = 1.4e-80
Identity = 176/262 (67.18%), Postives = 198/262 (75.57%), Query Frame = 1 

Query: 6   KRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPS 65
           KR    NSDSD+DETFY+RY SA   APP  SSS  + ++      ST  GGGSGGL PS
Sbjct: 2   KRKSTKNSDSDEDETFYFRYSSAV--APPSSSSSNPNLATSK----STGGGGGSGGLAPS 61

Query: 66  KSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTV 125
           KST+YVSN DYSLTNSDLHTLFSTFGKIARVTVLKDR TR S+G AFVQF+S++DA+   
Sbjct: 62  KSTLYVSNLDYSLTNSDLHTLFSTFGKIARVTVLKDRATRNSKGVAFVQFVSREDALSAA 121

Query: 126 KQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
             MHGKILNGR L  +IA DNGRA EFI+KRVYKDKSRCYECGA  GHLSYECPKNQLGP
Sbjct: 122 SVMHGKILNGRTLSASIAVDNGRAPEFIKKRVYKDKSRCYECGA-GGHLSYECPKNQLGP 181

Query: 186 RERPEPKRVRKGGVGARHEE---DWG---SDDGEGFEDDKWASVVDGDADQRLLTSSENV 245
           RERP PK+ R+GG G    E   DWG   S+ GEGFE++ WASVVDG A++R L  SE  
Sbjct: 182 RERPVPKKGRRGGGGGEKREDGGDWGEEESEGGEGFEEENWASVVDGAAEER-LRKSEMA 241

Query: 246 VEKKK--AKKASYFSDESGEDE 260
            EKKK   +KASYFSDES E+E
Sbjct: 242 EEKKKKMTRKASYFSDESDEEE 255

[Close]
BLAST of CmaCh15G005030 vs. NCBI nr
Match: gi|703126292|ref|XP_010103541.1| (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Morus notabilis])

HSP 1 Score: 305.4 bits (781), Expect = 9.2e-80
Identity = 173/273 (63.37%), Postives = 201/273 (73.63%), Query Frame = 1 

Query: 2   SRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGG 61
           ++K  +  NP    DDD+TFYYRY SA  +A PP  +  +  +++ HS      GGGSG 
Sbjct: 95  NKKTTKKNNPTDSDDDDDTFYYRYASA--AANPPDGAGATTSAAKKHS----GGGGGSGT 154

Query: 62  LVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDA 121
           L PSKST+YVSN D++LTNSDLHTLFSTFGKIARV+VLKDR TR+SRG AFVQF+S+DDA
Sbjct: 155 LAPSKSTLYVSNIDFALTNSDLHTLFSTFGKIARVSVLKDRHTRQSRGVAFVQFVSRDDA 214

Query: 122 VKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKN 181
           V    QMHGK+LNGR L  +IA DNGR+AEFIRKRVY+DKSRCYECGA +GHLSYECPKN
Sbjct: 215 VFAASQMHGKVLNGRTLTASIAADNGRSAEFIRKRVYRDKSRCYECGA-EGHLSYECPKN 274

Query: 182 QLGPRERPEPKRVR-----KGGVGAR---------HEEDWGSDDGEGFEDDKWASVVDGD 241
           QLGPRERP PKR R      GG G R          +E+ G D GEGFE+D WASVVDG 
Sbjct: 275 QLGPRERPPPKRERGRGGGGGGGGGRGTNCWRENEQDEEIGPDGGEGFEEDNWASVVDGG 334

Query: 242 ADQRLLTS-SENVVEKKKAKKASYFSDESGEDE 260
           AD RLL S  +   EKK+ KKASYFSDESG+DE
Sbjct: 335 ADDRLLRSRGDGGQEKKRMKKASYFSDESGDDE 360

[Close]
BLAST of CmaCh15G005030 vs. NCBI nr
Match: gi|1009119832|ref|XP_015876595.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Ziziphus jujuba])

HSP 1 Score: 297.4 bits (760), Expect = 2.5e-77
Identity = 177/268 (66.04%), Postives = 198/268 (73.88%), Query Frame = 1 

Query: 4   KGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKS--GGGSGG 63
           K K+  + NSDSDDD TFYYRY    SSAP PPS S +      +  + T S   GGS  
Sbjct: 7   KNKKDSDNNSDSDDD-TFYYRY----SSAPAPPSFSAAQSPRHKNPTTITTSIINGGSSS 66

Query: 64  ---LVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQ 123
              L PSKST+YVSN DYSLTNSDLHTLFSTFGKIARVT+LK R TR SRG AF+QF+S+
Sbjct: 67  SSSLAPSKSTIYVSNLDYSLTNSDLHTLFSTFGKIARVTILKHRDTRLSRGVAFIQFVSR 126

Query: 124 DDAVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 183
           +DA    +QMHGKILNGR L  +IA DNGRA EFIRKRVY+DKS+CYECG V+GHLSYEC
Sbjct: 127 NDAASAARQMHGKILNGRKLVASIAADNGRAPEFIRKRVYRDKSQCYECG-VEGHLSYEC 186

Query: 184 PKNQLGPRERPEPKRVRKGG-VGARHEEDWG----SDDGEGFEDDKWASVVDGDADQRLL 243
           PKNQLGPRERP PKR RKGG  G   +ED G     D GEGFEDD WASVVDG A++RLL
Sbjct: 187 PKNQLGPRERPVPKRGRKGGWSGGGKKEDEGEDLVDDGGEGFEDDNWASVVDGGANERLL 246

Query: 244 TSSENVV--EKKKAKKASYFSDESGEDE 260
             S+N V  E+KK KKASYFSDES  DE
Sbjct: 247 KGSDNGVMEERKKMKKASYFSDESDGDE 268

[Close]
BLAST of CmaCh15G005030 vs. NCBI nr
Match: gi|802660682|ref|XP_012080966.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curcas])

HSP 1 Score: 295.8 bits (756), Expect = 7.3e-77
Identity = 166/249 (66.67%), Postives = 190/249 (76.31%), Query Frame = 1 

Query: 12  NSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYV 71
           +SDSD+DETFYYRY    SSAP PPSSS       S+         GS GL PSKST+YV
Sbjct: 6   HSDSDEDETFYYRY----SSAPQPPSSS-------SNPSKPNPKSNGSDGLAPSKSTLYV 65

Query: 72  SNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDDAVKTVKQMHGK 131
           SN DYSLTNSDLHTLFSTFGKIARVTVLKDR +R+S+G AF+QF+S++DAV   +QM  K
Sbjct: 66  SNLDYSLTNSDLHTLFSTFGKIARVTVLKDRVSRQSKGVAFIQFVSRNDAVSAARQMDKK 125

Query: 132 ILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEP 191
           ILNGR L  +IA DNGRA EFI+KRVYKDKSRCYECG  +GHLSYECP+NQLG RERP  
Sbjct: 126 ILNGRTLSASIAADNGRAPEFIKKRVYKDKSRCYECGE-NGHLSYECPRNQLGARERPVA 185

Query: 192 KRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENV-VEKKKAKKASY 251
           KR R  G   R EE+W  +DGE FE++ WASVVDGDAD+RLL+  E   VE+KK KKASY
Sbjct: 186 KRGRGDGGQGRREEEW--EDGEVFEEENWASVVDGDADERLLSRGEETKVERKKVKKASY 240

Query: 252 FSDESGEDE 260
           FSDES E+E
Sbjct: 246 FSDESDEEE 240

The following BLAST results are available for this feature:
BLAST of CmaCh15G005030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
U1131_ARATH8.6e-7057.20U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana G... [more]
ZCRB1_XENLA6.4e-4146.05Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Xenopus laev... [more]
ZCRB1_DANRE1.9e-4047.42Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ... [more]
ZCRB1_HUMAN3.2e-4045.75Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens... [more]
ZCRB1_RAT1.6e-3944.75Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve... [more]
BLAST of CmaCh15G005030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2TUZ0_GOSRA9.9e-8167.18Uncharacterized protein OS=Gossypium raimondii GN=B456_009G310500 PE=4 SV=1[more]
W9RLG6_9ROSA6.4e-8063.37Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Morus notabi... [more]
A0A067KDZ5_JATCU5.1e-7766.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16159 PE=4 SV=1[more]
A0A061FPI6_THECC6.6e-7766.16RNA recognition motif and CCHC-type zinc finger domains containing protein OS=Th... [more]
M5X019_PRUPE6.6e-7764.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010566mg PE=4 SV=1[more]
BLAST of CmaCh15G005030 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10400.14.8e-7157.20 RNA recognition motif and CCHC-type zinc finger domains containing p... [more]
AT3G23830.12.5e-1136.67 glycine-rich RNA-binding protein 4[more]
AT4G20030.11.6e-1038.82 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G46020.14.8e-1034.04 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G64200.11.1e-0926.04 ortholog of human splicing factor SC35[more]
BLAST of CmaCh15G005030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113349|ref|XP_008456528.1|1.0e-12691.12PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Cuc... [more]
gi|823229932|ref|XP_012447703.1|1.4e-8067.18PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Gossypiu... [more]
gi|703126292|ref|XP_010103541.1|9.2e-8063.37Zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Morus notabili... [more]
gi|1009119832|ref|XP_015876595.1|2.5e-7766.04PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Ziziphus juju... [more]
gi|802660682|ref|XP_012080966.1|7.3e-7766.67PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Jatropha curc... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR001878Znf_CCHC
IPR003954RRM_dom_euk
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G005030.1CmaCh15G005030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 69..139
score: 2.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 68..141
score: 3.1
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 67..145
score: 19
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 159..182
score: 7.
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 68..141
score: 6.
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 42..148
score: 6.7
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 11..143
score: 8.87
NoneNo IPR availablePANTHERPTHR23139RNA-BINDING PROTEINcoord: 56..196
score: 2.5