CmaCh15G004570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G004570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Aquaporin PIP2
Location	Cma_Chr15 : 2035913 .. 2038870 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTGTCGTTACTGTAGTTAGTGGTATGAACAGTGAAGGCATTGTTCTGAGTGGGGACAGAACGACGAAGTGGTACGGAGCAGAGCGATGAGTCGGAGCCGCTGAAAATCACTGCTCCGCTTCTCTTCTTTTTCTTCAATTTCCTCTCATTAAATGCAGCTCTCTTCGCTCCCCAACTTCGCACCAGATTCATTCATCCATTCGAAATCACTCCTAGGGTTAAGATTTCGATTTCTCTGTCTTTAAGGCGAAGAATGCAGCGGAGCGCGGTTCGTTATCGAGGAAGAACTACCACGATCCGCCAACGGCGCCGCTCATCGACGGCGTGGAGATTACGAAGTGGACGTTTTACAGAGCTCTGATTGCGGAGTTCAAGCCACTCTGCTTTTCCTCTACGTCATTGTGTTGACGGTGATTGCAATTCGATCGTGTCGGCAACATGGATGTGGATCCAGGAGGTGGAGTCTGGATTCTCGGCGTTGCTTGGGCATTTGGAGGAATGATCTACGGTATTGTTTACTATACTGCTGGAATTTCAGGTTCTTCTTCCTCTCTCTTCGGCTTAAAGTTGAAGCTTGAACTTCTTTTTCTCATTTTGTTAGAGACGTGAGCATTTTCTCCGACAAAACGAGATTTTTCTTTCATTTTCTCGGCTTCCAAGCATACAAATTTCCACGCTGCATCTATGATATCATCTTGCACTTTGTTTTGGCGCGTAAACCTCAAAACCGTTGTAAACCTTGCTCAGCGGAGTTGGGATCGTTAAGGCCATCCACAAGTACCGCCGGCGGCCGCGTCCATGGGCCCACGGATAACTACACCTTAGGCATCAGGCTACCCGCCGAGATCGTCGGCACGTTTACGTTGGCGTACACCACCTTCTCGGCCACCGATCCTAAATGAAACTAGGATCTCAAGAAAATGAATAGTTTAGTCTCCAAACTTTAAAATTTATGTTCAATAGAATAAGTATCTAGACTATATCTCTAAACTTTTAATTTTCGTTGAAATTGACGGATCTAAGTATGCAAAAATTAAAAGAAAAAAAATTAATCTCATTAGACGCACAATTCAATGTCATGTCTAACAAATTTATTAATTTAAAAAGACGTTGAACATGTTCGAAATCTATTACTCTCAAAATTGAGAGTATTGCATTTCATAAGAACATAGTTCATAGCTCAGTCTTTAGGTTCGGTACTCTGTCCCTCGAGTTTGATATTGAAAATTTACAGAGTTCTACCTTGGACTCATTGGATTTGAGAATCATCCAACTTTTTGTTTGTTTACAAGGATAATTGTATTCCTACCAGCAAAATCATTCCTCTAACCTACATGTCATAGTGATCTTCCATGAGCTTAAACCAGCCACAAAACATGATCTTTTCCTTTATTTTCCACTTTACCAAGATAGCAAAAACAAATTCTTTTAAAGTTCTATTAAGTTTCTTTTTATTGAAAGAATAACAAAGTGGGTTCATGTTGATGAGCACCAACTCCCAACCCGAGGCCTATATTTTAGACCAGCATGAACAATTTAGCTTTCTGGGACGGTTCTTATTTTTATTCCCATCTTTCCGTTTTCTTGTTGAGCTATGTTTATATTGGTAGAAAGAAGAATAAAATGACGTTAAAACTATAAATTAAACTAGGAGCTAAAAAAAAAAAGTTCCTATTTATTTATATATTGGGTTATATTCCCTTTATTTGAACTATATCTTTGAAGTTTCTACATCTTCCTGTTTCTTTTCACCTTGAAGGAAACTATAATCATCCACCTTCTTTTTCCCATGTTTGTGAAGTTTGTTCTATTTCTGGGGATAAGTTAAAAGAAAGAAAAAGAAAAAGAAAAAGGAAAAAAAAAACCATACTCAGGAAGCACAAATTCATTCACAAGAGACAAAATAAAGAAACAAAAGTGAAAAAATCATCTAATATACCACAAAAGCTAAATGATTAGTTCAAACTTAAAAGCAAAGATGACCAATTGGCTCACTCTTTATTAAGCCTTCCACTCAACAATGAACTAAAAATTCCAAACTCTTCTGACATGGCTAGTCCCCACACCAACCTTCTTTTCCTTTCTTGTTTATTCTAATTATTCTTTACCTATTTTTCCTCACATAGCCCAAAATTTTCAACTACAACCAACCATGAACCTGTTTCACCTGAGTTTAGAATTCTAAGGCACGCCTACATCATTGCATTAAATCATATTCCTTCTACTCACAATATTTTTCCTTTTGCTTTCTCGGTCAGGCCTTAGGACACAGACATTGTATTAAAGTAGCCCTACAAGAGGCGTTATGGCTAAGTAGTTCAGTGAGTTTCAAACTTTTTCAGCTCTATATAAACTCATCTTCTTTAATGAAGTGTAAAGAGTAAGTGAACAAGTGCGTTACTTACAGGATTTGGAGGAAAAATGGCACCCATCACCACCATCTTGTCTTTTCTCTTCTCTTCTCTGTCCTTTTTATCTGATCCTTGGCCTGAAGCATTCTATGGTCACCCTCTTGATAACTCGGCGCAGTTGTTGCTCCTCGGGTATGCTACTTTCCACACACAGCCTGCAGTCGTGTTATAATTTGCATTGACAAGATTGTCTGCGAATCAAACTGTTCGTCTTCTTCAAAGTTTGCAGCAAGATCTGCTCAAGTTCAGTCTGCAATCTGCATGACATCTTTAACCTTTTCTGTTGAAGATGAAGACTGTTGCAGATATGTAATAGTATTTTCATAGATTTCTTCTGTTAAGAATTTGTGACGAAAAACTTTCAACTGCAATGGTGATTGATGTACTGAAGTTCAAAACCTAGTTAAAAAAACAAAAATCATTTGCTCCCCCAGAATTGGACCATGTTACCAAAACTTCCAACATTAGAGATGCAAGGATTGTAATGTAAATATAATCAGCTCAAACATTTAGAGTTCTATTTTTATGATATAGTCCGTTTTTCC

mRNA sequence

AATTTGTCGTTACTGTAGTTAGTGGTATGAACAGTGAAGGCATTGTTCTGAGTGGGGACAGAACGACGAAGTGGTACGGAGCAGAGCGATGAGTCGGAGCCGCTGAAAATCACTGCTCCGCTTCTCTTCTTTTTCTTCAATTTCCTCTCATTAAATGCAGCTCTCTTCGCTCCCCAACTTCGCACCAGATTCATTCATCCATTCGAAATCACTCCTAGGGTTAAGATTTCGATTTCTCTGTCTTTAAGGCGAAGAATGCAGCGGAGCGCGGTTCGTTATCGAGGAAGAACTACCACGATCCGCCAACGGCGCCGCTCATCGACGGCGTGGAGATTACGAAGTGGACGTTTTACAGAGCTCTGATTGCGGAGTTCAAGCCACTCTGCTTTTCCTCTACGTCATTGTGTTGACGGTGATTGCAATTCGATCGTGTCGGCAACATGGATGTGGATCCAGGAGGTGGAGTCTGGATTCTCGGCGTTGCTTGGGCATTTGGAGGAATGATCTACGGTATTGTTTACTATACTGCTGGAATTTCAGGATTTGGAGGAAAAATGGCACCCATCACCACCATCTTGTCTTTTCTCTTCTCTTCTCTGTCCTTTTTATCTGATCCTTGGCCTGAAGCATTCTATGGTCACCCTCTTGATAACTCGGCGCAGTTGTTGCTCCTCGGGTATGCTACTTTCCACACACAGCCTGCAGTCGTGTTATAATTTGCATTGACAAGATTGTCTGCGAATCAAACTGTTCGTCTTCTTCAAAGTTTGCAGCAAGATCTGCTCAAGTTCAGTCTGCAATCTGCATGACATCTTTAACCTTTTCTGTTGAAGATGAAGACTGTTGCAGATATGTAATAGTATTTTCATAGATTTCTTCTGTTAAGAATTTGTGACGAAAAACTTTCAACTGCAATGGTGATTGATGTACTGAAGTTCAAAACCTAGTTAAAAAAACAAAAATCATTTGCTCCCCCAGAATTGGACCATGTTACCAAAACTTCCAACATTAGAGATGCAAGGATTGTAATGTAAATATAATCAGCTCAAACATTTAGAGTTCTATTTTTATGATATAGTCCGTTTTTCC

Coding sequence (CDS)

ATGGATGTGGATCCAGGAGGTGGAGTCTGGATTCTCGGCGTTGCTTGGGCATTTGGAGGAATGATCTACGGTATTGTTTACTATACTGCTGGAATTTCAGGATTTGGAGGAAAAATGGCACCCATCACCACCATCTTGTCTTTTCTCTTCTCTTCTCTGTCCTTTTTATCTGATCCTTGGCCTGAAGCATTCTATGGTCACCCTCTTGATAACTCGGCGCAGTTGTTGCTCCTCGGGTATGCTACTTTCCACACACAGCCTGCAGTCGTGTTATAA

Protein sequence

MDVDPGGGVWILGVAWAFGGMIYGIVYYTAGISGFGGKMAPITTILSFLFSSLSFLSDPWPEAFYGHPLDNSAQLLLLGYATFHTQPAVVL

Homology

[Close]

BLAST of CmaCh15G004570 vs. TrEMBL
Match: A0A0A0KE34_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405315 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 38 KMAPITTILSFLFSSLSFLSDPWPEAFYGHPLDNSAQLLLLGYATFHTQPAVVL 92
          +MAPI+TILSFL SSLSFLSDPWPEAFYG PL++SAQL L+GYA FHT  A+VL
Sbjct: 24 EMAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAIVL 77

[Close]

BLAST of CmaCh15G004570 vs. TAIR10
Match: AT5G60660.1 (AT5G60660.1 plasma membrane intrinsic protein 2;4)

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1


Query: 7   GGVWILGVAWAFGGMIYGIVYYTAGISGFGGKMAPITTILSFLFSSLSFL 57
           GGV ILG+AWAFGGMI+ +VY TAGIS  GG + P  T+  FL   +S +
Sbjct: 76  GGVGILGIAWAFGGMIFVLVYCTAGIS--GGHINPAVTVGLFLARKVSLV 123

[Close]

BLAST of CmaCh15G004570 vs. TAIR10
Match: AT2G16850.1 (AT2G16850.1 plasma membrane intrinsic protein 2;8)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 5   PGGGVWILGVAWAFGGMIYGIVYYTAGISGFGGKMAPITTILSFLFSSLS 55
           P GGV +LG+AWAFGGMI+ +VY TAGIS  GG + P  T   FL   +S
Sbjct: 65  PCGGVGLLGIAWAFGGMIFVLVYCTAGIS--GGHINPAVTFGLFLARKVS 112

[Close]

BLAST of CmaCh15G004570 vs. TAIR10
Match: AT3G53420.1 (AT3G53420.1 plasma membrane intrinsic protein 2A)

HSP 1 Score: 49.3 bits (116), Expect = 1.5e-06
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 2   DVDPGG----GVWILGVAWAFGGMIYGIVYYTAGISGFGGKMAPITTILSFLFSSLS 55
           D D GG    GV ILG+AWAFGGMI+ +VY TAGIS  GG + P  T   FL   +S
Sbjct: 67  DTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGIS--GGHINPAVTFGLFLARKVS 121

[Close]

BLAST of CmaCh15G004570 vs. TAIR10
Match: AT2G39010.1 (AT2G39010.1 plasma membrane intrinsic protein 2E)

HSP 1 Score: 48.9 bits (115), Expect = 1.9e-06
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 2   DVDPGGG----VWILGVAWAFGGMIYGIVYYTAGISGFGGKMAPITTILSFLFSSLSFL 57
           D++ GGG    V +LG++WAFGGMI+ +VY TAGIS  GG + P  T   FL S +S +
Sbjct: 66  DINAGGGACASVGLLGISWAFGGMIFILVYCTAGIS--GGHINPAVTFGLFLASKVSLV 122

[Close]

BLAST of CmaCh15G004570 vs. TAIR10
Match: AT2G37170.1 (AT2G37170.1 plasma membrane intrinsic protein 2)

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 7   GGVWILGVAWAFGGMIYGIVYYTAGISGFGGKMAPITTILSFLFSSLSFL 57
           GGV ILG+AWAFGGMI+ +VY TAGIS  GG + P  T   FL   +S +
Sbjct: 74  GGVGILGIAWAFGGMIFILVYCTAGIS--GGHINPAVTFGLFLARKVSLI 121

[Close]

BLAST of CmaCh15G004570 vs. NCBI nr
Match: gi|700192614|gb|KGN47818.1| (hypothetical protein Csa_6G405315 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 4.7e-15
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1


Query: 38 KMAPITTILSFLFSSLSFLSDPWPEAFYGHPLDNSAQLLLLGYATFHTQPAVVL 92
          +MAPI+TILSFL SSLSFLSDPWPEAFYG PL++SAQL L+GYA FHT  A+VL
Sbjct: 24 EMAPISTILSFLLSSLSFLSDPWPEAFYGLPLEHSAQLSLIGYAIFHTDTAIVL 77

The following BLAST results are available for this feature:

BLAST of CmaCh15G004570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE34_CUCSA	3.3e-15	77.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405315 PE=4 SV=1	[more]

BLAST of CmaCh15G004570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60660.1	1.1e-06	56.00	plasma membrane intrinsic protein 2;4	[more]
AT2G16850.1	1.5e-06	56.00	plasma membrane intrinsic protein 2;8	[more]
AT3G53420.1	1.5e-06	54.39	plasma membrane intrinsic protein 2A	[more]
AT2G39010.1	1.9e-06	49.15	plasma membrane intrinsic protein 2E	[more]
AT2G37170.1	2.5e-06	56.00	plasma membrane intrinsic protein 2	[more]

BLAST of CmaCh15G004570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192614\|gb\|KGN47818.1\|	4.7e-15	77.78	hypothetical protein Csa_6G405315 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023271	Aquaporin-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G004570.1	CmaCh15G004570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023271	Aquaporin-like	GENE3D	G3DSA:1.20.1080.10		coord: 6..56 score: 2.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G004570	CmoCh15G004640	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G004570	CsaV3_6G036390	Cucumber (Chinese Long) v3	cmacucB0366
CmaCh15G004570	Cla97C08G150200	Watermelon (97103) v2	cmawmbB317

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G004570	Cucumber (Chinese Long) v3	cmacucB0359
CmaCh15G004570	Wax gourd	cmawgoB0395
CmaCh15G004570	Wax gourd	cmawgoB0399
CmaCh15G004570	Wax gourd	cmawgoB0408
CmaCh15G004570	Cucurbita maxima (Rimu)	cmacmaB321
CmaCh15G004570	Cucurbita maxima (Rimu)	cmacmaB324
CmaCh15G004570	Cucumber (Gy14) v1	cgycmaB0382
CmaCh15G004570	Cucumber (Gy14) v1	cgycmaB0848
CmaCh15G004570	Watermelon (97103) v1	cmawmB267
CmaCh15G004570	Cucurbita moschata (Rifu)	cmacmoB305
CmaCh15G004570	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G004570	Wild cucumber (PI 183967)	cmacpiB309
CmaCh15G004570	Wild cucumber (PI 183967)	cmacpiB318
CmaCh15G004570	Cucumber (Chinese Long) v2	cmacuB305
CmaCh15G004570	Cucumber (Chinese Long) v2	cmacuB312
CmaCh15G004570	Melon (DHL92) v3.5.1	cmameB263
CmaCh15G004570	Melon (DHL92) v3.5.1	cmameB273
CmaCh15G004570	Watermelon (Charleston Gray)	cmawcgB263
CmaCh15G004570	Watermelon (Charleston Gray)	cmawcgB271
CmaCh15G004570	Watermelon (97103) v1	cmawmB258
CmaCh15G004570	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G004570	Cucurbita pepo (Zucchini)	cmacpeB313
CmaCh15G004570	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G004570	Bottle gourd (USVL1VR-Ls)	cmalsiB279
CmaCh15G004570	Bottle gourd (USVL1VR-Ls)	cmalsiB295
CmaCh15G004570	Cucumber (Gy14) v2	cgybcmaB615
CmaCh15G004570	Cucumber (Gy14) v2	cgybcmaB744
CmaCh15G004570	Melon (DHL92) v3.6.1	cmamedB297
CmaCh15G004570	Melon (DHL92) v3.6.1	cmamedB313
CmaCh15G004570	Silver-seed gourd	carcmaB0362
CmaCh15G004570	Silver-seed gourd	carcmaB0961
CmaCh15G004570	Silver-seed gourd	carcmaB1163