CmaCh15G004550 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh15G004550
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Tyrosine-specific transport protein
Location	Cma_Chr15 : 2032627 .. 2033157 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATTTGGAAACTTGTAGAGTCACCTTCTTCGCCTCTGCATTTGGCTTCCATGAATTTACACTCCATCATCATCTCTTCCACTTTATTGTGCCCTACAACCACGGTCGATGCCTGCGACTTCTTTCACGGTCGCCATTGCCGTCGCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGGTAACGTGCTTCGATTTGATTATGCTTTTTTTCCCTCTATTTAATCCATCAATTTTACGTGTTTTCACGTCTTGCTTGGGCGAATCTTGAGTTTCGCTTGCTTTTACATGGCGTTTCAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAGAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAAATATGGCGCAGGAGTATCTGGGGGACTTCGGAACCCTAGCCACTGTTGCCCATGTTTTCTTGGGATACACTTCTATAGTTTCCTGTGTTTCCAAGTCGGGTGAGATCCTTCTCTAA

mRNA sequence

CATATTTGGAAACTTGTAGAGTCACCTTCTTCGCCTCTGCATTTGGCTTCCATGAATTTACACTCCATCATCATCTCTTCCACTTTATTGTGCCCTACAACCACGGTCGATGCCTGCGACTTCTTTCACGGTCGCCATTGCCGTCGCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAGAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAAATATGGCGCAGGAGTATCTGGGGGACTTCGGAACCCTAGCCACTGTTGCCCATGTTTTCTTGGGATACACTTCTATAGTTTCCTGTGTTTCCAAGTCGGGTGAGATCCTTCTCTAA

Coding sequence (CDS)

ATGCCTGCGACTTCTTTCACGGTCGCCATTGCCGTCGCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAGAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAAATATGGCGCAGGAGTATCTGGGGGACTTCGGAACCCTAGCCACTGTTGCCCATGTTTTCTTGGGATACACTTCTATAGTTTCCTGTGTTTCCAAGTCGGGTGAGATCCTTCTCTAA

Protein sequence

MPATSFTVAIAVAMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFGTLATVAHVFLGYTSIVSCVSKSGEILL

Homology

[Close]

BLAST of CmaCh15G004550 vs. TrEMBL
Match: A0A0A0KHF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405310 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 35  VFLLRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVS 94
           V L R KK+E   EE  GETG+E ISVR MAQE LGDFG TLATV +VFLGYTS+V+ +S
Sbjct: 137 VVLWRRKKKEKKAEE--GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYIS 196

Query: 95  KSGEILL 101
           KSGEILL
Sbjct: 197 KSGEILL 201

[Close]

BLAST of CmaCh15G004550 vs. TrEMBL
Match: W9RZC6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013410 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 38  LRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSG 97
           LR +KR+  EE     + +E IS+R MAQE LGDFG TLAT+ +VFLGYTS+V+  SKSG
Sbjct: 151 LRRRKRKKEEEM----SDLEVISIRTMAQETLGDFGGTLATLTYVFLGYTSMVAYSSKSG 209

Query: 98  EIL 100
           EIL
Sbjct: 211 EIL 209

[Close]

BLAST of CmaCh15G004550 vs. TrEMBL
Match: M5X1K8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007543mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-07
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 42  KRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSGEIL 100
           +R+ G+E+R  E  +E IS+R MAQE LGD+G TL TV ++FLGYTS+++  SKSGEIL
Sbjct: 2   RRKQGKEDRENE--LEVISIRTMAQETLGDWGGTLVTVIYIFLGYTSVIAYSSKSGEIL 58

[Close]

BLAST of CmaCh15G004550 vs. TrEMBL
Match: A0A118K5W2_CYNCS (Tryptophan/tyrosine permease OS=Cynara cardunculus var. scolymus GN=Ccrd_011886 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1


Query: 41  KKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSGEIL 100
           KK+EN   E   E  +E IS+R MAQE LG+ G TLAT+ +VFLGYTS+++  SKSGEIL
Sbjct: 150 KKKEN-RVENENENELEVISIRTMAQETLGELGGTLATLTYVFLGYTSMIAYASKSGEIL 208

[Close]

BLAST of CmaCh15G004550 vs. TrEMBL
Match: B9SUA8_RICCO (Tyrosine-specific transport protein, putative OS=Ricinus communis GN=RCOM_0228720 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-07
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 38  LRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSG 97
           LR KK++ G     GE  ++ IS+R MAQE LGD+G TLAT+ +VFLGYTS+++  SKSG
Sbjct: 149 LRRKKKKRG-----GEGELDVISLRTMAQETLGDWGGTLATMTYVFLGYTSMIAYSSKSG 206

Query: 98  EIL 100
           E+L
Sbjct: 209 ELL 206

[Close]

BLAST of CmaCh15G004550 vs. NCBI nr
Match: gi|659113247|ref|XP_008456475.1| (PREDICTED: uncharacterized protein LOC103496418 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1


Query: 34  LVFLLRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCV 93
           +V   R KK++ GEE   GETG+E ISVR MAQE LGDFG TLATV +VFLGYTS+V+ +
Sbjct: 137 VVLWRRKKKKKKGEE---GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYI 196

Query: 94  SKSGEILL 101
           SKSGEILL
Sbjct: 197 SKSGEILL 201

[Close]

BLAST of CmaCh15G004550 vs. NCBI nr
Match: gi|778715967|ref|XP_011657484.1| (PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 1


Query: 35  VFLLRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVS 94
           V L R KK+E   EE  GETG+E ISVR MAQE LGDFG TLATV +VFLGYTS+V+ +S
Sbjct: 137 VVLWRRKKKEKKAEE--GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYIS 196

Query: 95  KSGEILL 101
           KSGEILL
Sbjct: 197 KSGEILL 201

[Close]

BLAST of CmaCh15G004550 vs. NCBI nr
Match: gi|703110543|ref|XP_010099618.1| (hypothetical protein L484_013410 [Morus notabilis])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 38  LRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSG 97
           LR +KR+  EE     + +E IS+R MAQE LGDFG TLAT+ +VFLGYTS+V+  SKSG
Sbjct: 151 LRRRKRKKEEEM----SDLEVISIRTMAQETLGDFGGTLATLTYVFLGYTSMVAYSSKSG 209

Query: 98  EIL 100
           EIL
Sbjct: 211 EIL 209

[Close]

BLAST of CmaCh15G004550 vs. NCBI nr
Match: gi|596001478|ref|XP_007218172.1| (hypothetical protein PRUPE_ppa007543mg [Prunus persica])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-07
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1


Query: 42  KRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSGEIL 100
           +R+ G+E+R  E  +E IS+R MAQE LGD+G TL TV ++FLGYTS+++  SKSGEIL
Sbjct: 2   RRKQGKEDRENE--LEVISIRTMAQETLGDWGGTLVTVIYIFLGYTSVIAYSSKSGEIL 58

[Close]

BLAST of CmaCh15G004550 vs. NCBI nr
Match: gi|1000945896|ref|XP_015581110.1| (PREDICTED: tyrosine-specific transport protein [Ricinus communis])

HSP 1 Score: 62.0 bits (149), Expect = 6.8e-07
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 38  LRAKKRENGEEERRGETGIEAISVRNMAQEYLGDFG-TLATVAHVFLGYTSIVSCVSKSG 97
           LR KK++ G     GE  ++ IS+R MAQE LGD+G TLAT+ +VFLGYTS+++  SKSG
Sbjct: 153 LRRKKKKRG-----GEGELDVISLRTMAQETLGDWGGTLATMTYVFLGYTSMIAYSSKSG 210

Query: 98  EIL 100
           E+L
Sbjct: 213 ELL 210

The following BLAST results are available for this feature:

BLAST of CmaCh15G004550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHF6_CUCSA	1.3e-12	70.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G405310 PE=4 SV=1	[more]
W9RZC6_9ROSA	1.2e-07	60.32	Uncharacterized protein OS=Morus notabilis GN=L484_013410 PE=4 SV=1	[more]
M5X1K8_PRUPE	1.6e-07	57.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007543mg PE=4 SV=1	[more]
A0A118K5W2_CYNCS	4.7e-07	58.33	Tryptophan/tyrosine permease OS=Cynara cardunculus var. scolymus GN=Ccrd_011886 ...	[more]
B9SUA8_RICCO	4.7e-07	55.56	Tyrosine-specific transport protein, putative OS=Ricinus communis GN=RCOM_022872...	[more]

BLAST of CmaCh15G004550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113247\|ref\|XP_008456475.1\|	1.4e-12	67.65	PREDICTED: uncharacterized protein LOC103496418 [Cucumis melo]	[more]
gi\|778715967\|ref\|XP_011657484.1\|	1.9e-12	70.15	PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus]	[more]
gi\|703110543\|ref\|XP_010099618.1\|	1.8e-07	60.32	hypothetical protein L484_013410 [Morus notabilis]	[more]
gi\|596001478\|ref\|XP_007218172.1\|	2.3e-07	57.63	hypothetical protein PRUPE_ppa007543mg [Prunus persica]	[more]
gi\|1000945896\|ref\|XP_015581110.1\|	6.8e-07	55.56	PREDICTED: tyrosine-specific transport protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
biological_process	GO:0015801	aromatic amino acid transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005887	integral component of plasma membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0015173	aromatic amino acid transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G004550.1	CmaCh15G004550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32195	FAMILY NOT NAMED	coord: 35..99 score: 2.2
None	No IPR available	PANTHER	PTHR32195:SF10	SUBFAMILY NOT NAMED	coord: 35..99 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh15G004550	Cla013774	Watermelon (97103) v1	cmawmB258
CmaCh15G004550	MELO3C019792	Melon (DHL92) v3.5.1	cmameB273
CmaCh15G004550	ClCG08G007470	Watermelon (Charleston Gray)	cmawcgB271
CmaCh15G004550	CmoCh15G004620	Cucurbita moschata (Rifu)	cmacmoB287
CmaCh15G004550	Lsi08G007270	Bottle gourd (USVL1VR-Ls)	cmalsiB295
CmaCh15G004550	MELO3C019793.2	Melon (DHL92) v3.6.1	cmamedB313
CmaCh15G004550	CsaV3_6G036380	Cucumber (Chinese Long) v3	cmacucB0366
CmaCh15G004550	Cla97C08G150190	Watermelon (97103) v2	cmawmbB317
CmaCh15G004550	Bhi04G001092	Wax gourd	cmawgoB0395
CmaCh15G004550	CsGy6G020580	Cucumber (Gy14) v2	cgybcmaB744
CmaCh15G004550	Carg02404	Silver-seed gourd	carcmaB0362
CmaCh15G004550	Carg04553	Silver-seed gourd	carcmaB0961

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh15G004550	CmaCh04G025790	Cucurbita maxima (Rimu)	cmacmaB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh15G004550	Cucumber (Chinese Long) v3	cmacucB0359
CmaCh15G004550	Wax gourd	cmawgoB0399
CmaCh15G004550	Wax gourd	cmawgoB0408
CmaCh15G004550	Cucurbita maxima (Rimu)	cmacmaB321
CmaCh15G004550	Cucumber (Gy14) v1	cgycmaB0382
CmaCh15G004550	Cucumber (Gy14) v1	cgycmaB0848
CmaCh15G004550	Watermelon (97103) v1	cmawmB267
CmaCh15G004550	Cucurbita moschata (Rifu)	cmacmoB305
CmaCh15G004550	Cucurbita moschata (Rifu)	cmacmoB308
CmaCh15G004550	Wild cucumber (PI 183967)	cmacpiB309
CmaCh15G004550	Wild cucumber (PI 183967)	cmacpiB318
CmaCh15G004550	Cucumber (Chinese Long) v2	cmacuB305
CmaCh15G004550	Cucumber (Chinese Long) v2	cmacuB312
CmaCh15G004550	Melon (DHL92) v3.5.1	cmameB263
CmaCh15G004550	Watermelon (Charleston Gray)	cmawcgB263
CmaCh15G004550	Cucurbita pepo (Zucchini)	cmacpeB305
CmaCh15G004550	Cucurbita pepo (Zucchini)	cmacpeB313
CmaCh15G004550	Cucurbita pepo (Zucchini)	cmacpeB317
CmaCh15G004550	Bottle gourd (USVL1VR-Ls)	cmalsiB279
CmaCh15G004550	Cucumber (Gy14) v2	cgybcmaB615
CmaCh15G004550	Melon (DHL92) v3.6.1	cmamedB297
CmaCh15G004550	Silver-seed gourd	carcmaB1163