Carg02404 (gene) Silver-seed gourd

NameCarg02404
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTyrosine-specific transport protein, putative
LocationCucurbita_argyrosperma_scaffold_007 : 1578792 .. 1580619 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTTTTAGAGTCACCTTCTTCGCCTCTGCATTTGGCTTCCATGAATTTACACTCCCGTCATCATCTCTTCCACTTTATTTTGCCCTAAAACCCACGGTCGATGCCTGCAAGTTCTTTCACGGTCGCCATTGCCGTCCCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGGTAACGTGCTTGGATTTGATTATGCTTCTTTTTCCTCTATTTAATCCATCAATTTAGCGTGTTTTCACGTCTTTCTTGGGTGAATCTTGAGTTTTGCTTGGTGTTTCAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAAAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAACTATGGCGCAGGAGACTCTGGGGGACTTTGGAACCCTAGCCACTGTTGCCTATGTTTTCTTGGGCTACACTTCTATGGTGGCCTATGTTTCCAAGTCGGGTGAGATCCTTCTCTAATCGTTCAATCTTCCATCTCCACTTACAGGCTACCTTTTCTCTTTGGTTTTTTCTCTGCTAGCCATAGATCAAATCAACCAATGGCTTACTGCTTGCATGAAAGGTAACTTCAGGATGTGAACCAGTATTATTGCCTCTCACCTCGAATCAGTTCTAATTTTCGGGACAAAAATTCAATTGAATGTTTAAAACATATCTTTTTCCGTGGAGAACAGCTCTTATGTTTTAATGCTGTACATAATGGTTCCAAATGTAGTATAATTTTCTATTGATATTGGATCTTAGAATCCGTTTTATAGACAAAAATAGAAAACTGTTCTGCAATCATTCTCTCAAATTCGCCGTATGTATTTTATACAAATGTGGGTAAAAATGATTAATCTCTAAGAACAAACAGAAGTCTCCTTTTATAGTCTGGAGGATGGAGTAATTATGAATATCAAATTCCTTTCCTTAATCGTTTTTTTGGTCAATTATTTCCCCCAAGCATACAATCTGTTCAATGGTCTCTCACCTTAAATTAGAATGCTCTTATTGTTAACCATTTCCCTTACTTTTATCCTTTTGTTTTTCAGTTTTTTTCCTCCTTTCCTGCGTTAGTTACATGAATTTGCTGAACCCCTGGAAAAAAATTTCGTGCAAGGAAAAACGGGCTATATCCTAGAATTAGACTCTTGAAAGTTTATGTCAAGCAAATTGATTTGTTTTTTCCGAGGTTTTGATCTTCAGTACTGCAGTAGACTAATACATATCAAAGTTTCTTTACAAATTCTTAACAGAGGAAAACTATGGAAATACCATATTGCTTATTTATGTGCATGAGTCTCCATCTTCAACAGATCGAGCCTGAGCGGAACTTGCTGCGAGCTGCTTGGTTTGGAAACAATCTTGAGATACACATTATGACATGTATGCAGTATCCGTCTCATAAATTGCAAACCCAAGGACCGAAATTTGCAGTGAGTTGTCATGGGGAAGGCCATAGAATGCCTCAGGCCAAGGATCAGAAAAAAAGGAGAAAGAAGAGCTGAGAAAAGACAAGATAGTGGAGATGGATGGCATTTTTTTTCCAAAGTGCTGCAAGTTAATGCAGTTGTTTCACTTATTCTTTATACTTCTCTGGAGTGGGCGAGTTTATATAGAGCTGAAGGAGATTGAAGCTCACTGAAATATCTAGTTATAAACCTTAATGACGAGTTACTTTCACTAAACCTCTGGGTCCTATGCCCTGACCCAGAAAGCAGGAGGAATAATATTTTGTGTTTGGAAAGAATTTGATATAATGCAATTATGCAGGCGAGTCTTAGAATTCCA

mRNA sequence

AAACTTTTAGAGTCACCTTCTTCGCCTCTGCATTTGGCTTCCATGAATTTACACTCCCGTCATCATCTCTTCCACTTTATTTTGCCCTAAAACCCACGGTCGATGCCTGCAAGTTCTTTCACGGTCGCCATTGCCGTCCCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAAAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAACTATGGCGCAGGAGACTCTGGGGGACTTTGGAACCCTAGCCACTGTTGCCTATGTTTTCTTGGGCTACACTTCTATGGTGGCCTATGTTTCCAAGTCGGGTGAGATCCTTCTCTAATCGTTCAATCTTCCATCTCCACTTACAGGCTACCTTTTCTCTTTGGTTTTTTCTCTGCTAGCCATAGATCAAATCAACCAATGGCTTACTGCTTGCATGAAAGATCGAGCCTGAGCGGAACTTGCTGCGAGCTGCTTGGTTTGGAAACAATCTTGAGATACACATTATGACATGTATGCAGTATCCGTCTCATAAATTGCAAACCCAAGGACCGAAATTTGCAGTGAGTTGTCATGGGGAAGGCCATAGAATGCCTCAGGCCAAGGATCAGAAAAAAAGGAGAAAGAAGAGCTGAGAAAAGACAAGATAGTGGAGATGGATGGCATTTTTTTTCCAAAGTGCTGCAAGTTAATGCAGTTGTTTCACTTATTCTTTATACTTCTCTGGAGTGGGCGAGTTTATATAGAGCTGAAGGAGATTGAAGCTCACTGAAATATCTAGTTATAAACCTTAATGACGAGTTACTTTCACTAAACCTCTGGGTCCTATGCCCTGACCCAGAAAGCAGGAGGAATAATATTTTGTGTTTGGAAAGAATTTGATATAATGCAATTATGCAGGCGAGTCTTAGAATTCCA

Coding sequence (CDS)

ATGCCTGCAAGTTCTTTCACGGTCGCCATTGCCGTCCCCATGTTCAAGGACCTCTCTACAAAATTGCCGAATGGGCGAAAGATCAAAGAGATACAACCGTTGGTTTTTCTGCTACGAGCAAAAAAGCGGGAAAACGGAGAAGAAGAACGAAGAGGAGAGACGGGGATAGAGGCGATTTCAGTCAGAACTATGGCGCAGGAGACTCTGGGGGACTTTGGAACCCTAGCCACTGTTGCCTATGTTTTCTTGGGCTACACTTCTATGGTGGCCTATGTTTCCAAGTCGGGTGAGATCCTTCTCTAA

Protein sequence

MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL
BLAST of Carg02404 vs. NCBI nr
Match: XP_023550384.1 (uncharacterized protein LOC111808551 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 1.8e-40
Identity = 92/100 (92.00%), Postives = 95/100 (95.00%), Query Frame = 0

Query: 1   MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60
           MPA+SF +AIAV MFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEA+S
Sbjct: 1   MPATSFMIAIAVAMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAVS 60

Query: 61  VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 101
           VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS   LL
Sbjct: 61  VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSVFFLL 100

BLAST of Carg02404 vs. NCBI nr
Match: XP_023550385.1 (uncharacterized protein LOC111808551 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40
Identity = 90/95 (94.74%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MPASSFTVAIAVPMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAIS 60
          MPA+SF +AIAV MFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEA+S
Sbjct: 1  MPATSFMIAIAVAMFKDLSTKLPNGRKIKEIQPLVFLLRAKKRENGEEERRGETGIEAVS 60

Query: 61 VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS 96
          VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS
Sbjct: 61 VRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKS 95

BLAST of Carg02404 vs. NCBI nr
Match: XP_022939144.1 (uncharacterized protein LOC111445140 [Cucurbita moschata])

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-16
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 0

Query: 49  ERRGETGIEAISVRTMAQETLGDFGTLATVAYVFLGYTSMVAYVSKSGEILL 101
           +RRGETGI AISVRTMAQETLGDFGTLAT+AYVFLGYTSMVAYVSKSGEILL
Sbjct: 87  KRRGETGIGAISVRTMAQETLGDFGTLATIAYVFLGYTSMVAYVSKSGEILL 138

BLAST of Carg02404 vs. NCBI nr
Match: XP_011657484.1 (PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657486.1 PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657487.1 PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657488.1 PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657489.1 PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657490.1 PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657491.1 PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >KGN47817.1 hypothetical protein Csa_6G405310 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 1.2e-15
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 35  VFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVS 94
           V L R KK+E   EE  GETG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+S
Sbjct: 137 VVLWRRKKKEKKAEE--GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYIS 196

Query: 95  KSGEILL 101
           KSGEILL
Sbjct: 197 KSGEILL 201

BLAST of Carg02404 vs. NCBI nr
Match: XP_022954238.1 (uncharacterized protein LOC111456551 [Cucurbita moschata] >XP_022954246.1 uncharacterized protein LOC111456551 [Cucurbita moschata] >XP_022954253.1 uncharacterized protein LOC111456551 [Cucurbita moschata] >XP_022954261.1 uncharacterized protein LOC111456551 [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-12
Identity = 48/65 (73.85%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 37  LLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVSKS 96
           ++R KK E      RGETG++ ISVRTMAQETLGDF GTLATVAYVFLGY SMVAY+SKS
Sbjct: 139 VMRRKKTE------RGETGMKVISVRTMAQETLGDFGGTLATVAYVFLGYISMVAYISKS 197

Query: 97  GEILL 101
            EILL
Sbjct: 199 EEILL 197

BLAST of Carg02404 vs. TrEMBL
Match: tr|A0A0A0KHF6|A0A0A0KHF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405310 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.9e-16
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 35  VFLLRAKKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVS 94
           V L R KK+E   EE  GETG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+S
Sbjct: 137 VVLWRRKKKEKKAEE--GETGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYIS 196

Query: 95  KSGEILL 101
           KSGEILL
Sbjct: 197 KSGEILL 201

BLAST of Carg02404 vs. TrEMBL
Match: tr|A0A1S4E1A6|A0A1S4E1A6_CUCME (tyrosine-specific transport protein 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 54  TGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVSKSGEILL 101
           TG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+SKSGEILL
Sbjct: 154 TGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYISKSGEILL 201

BLAST of Carg02404 vs. TrEMBL
Match: tr|A0A1S4E201|A0A1S4E201_CUCME (tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 54  TGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVSKSGEILL 101
           TG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+SKSGEILL
Sbjct: 154 TGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYISKSGEILL 201

BLAST of Carg02404 vs. TrEMBL
Match: tr|A0A1S4E1A5|A0A1S4E1A5_CUCME (tyrosine-specific transport protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.8e-12
Identity = 43/48 (89.58%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 54  TGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVSKSGEILL 101
           TG+E ISVRTMAQETLGDF GTLATV YVFLGYTSMVAY+SKSGEILL
Sbjct: 154 TGMEVISVRTMAQETLGDFGGTLATVTYVFLGYTSMVAYISKSGEILL 201

BLAST of Carg02404 vs. TrEMBL
Match: tr|A0A2P5BQC0|A0A2P5BQC0_9ROSA (Tryptophan/tyrosine permease OS=Trema orientalis OX=63057 GN=TorRG33x02_312670 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 41  KKRENGEEERRGETGIEAISVRTMAQETLGDF-GTLATVAYVFLGYTSMVAYVSKSGEIL 100
           +K+E  EEE+  E  +E IS+RTMAQETLGD+ GTLATV YVFLGYTSMVAY SKSGEIL
Sbjct: 145 RKKEQKEEEKASE--LEVISLRTMAQETLGDWGGTLATVTYVFLGYTSMVAYSSKSGEIL 202

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023550384.11.8e-4092.00uncharacterized protein LOC111808551 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023550385.12.4e-4094.74uncharacterized protein LOC111808551 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022939144.11.8e-1694.23uncharacterized protein LOC111445140 [Cucurbita moschata][more]
XP_011657484.11.2e-1579.10PREDICTED: uncharacterized protein LOC101208104 [Cucumis sativus] >XP_011657486.... [more]
XP_022954238.11.2e-1273.85uncharacterized protein LOC111456551 [Cucurbita moschata] >XP_022954246.1 unchar... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KHF6|A0A0A0KHF6_CUCSA7.9e-1679.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405310 PE=4 SV=1[more]
tr|A0A1S4E1A6|A0A1S4E1A6_CUCME1.8e-1289.58tyrosine-specific transport protein 1-like isoform X3 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S4E201|A0A1S4E201_CUCME1.8e-1289.58tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A1S4E1A5|A0A1S4E1A5_CUCME1.8e-1289.58tyrosine-specific transport protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A2P5BQC0|A0A2P5BQC0_9ROSA3.4e-1173.33Tryptophan/tyrosine permease OS=Trema orientalis OX=63057 GN=TorRG33x02_312670 P... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015801aromatic amino acid transport
GO:0003333amino acid transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0015173aromatic amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005887integral component of plasma membrane
Vocabulary: INTERPRO
TermDefinition
IPR013059Trp_tyr_transpt
IPR018227Amino_acid_transport_2
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
biological_process GO:0015801 aromatic amino acid transport
cellular_component GO:0005887 integral component of plasma membrane
molecular_function GO:0015173 aromatic amino acid transmembrane transporter activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg02404-RACarg02404-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018227Amino acid/polyamine transporter 2PFAMPF03222Trp_Tyr_permcoord: 58..99
e-value: 8.9E-6
score: 24.9
NoneNo IPR availablePANTHERPTHR32195:SF10SUBFAMILY NOT NAMEDcoord: 48..99
IPR013059Tryptophan/tyrosine transporterPANTHERPTHR32195FAMILY NOT NAMEDcoord: 48..99

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg02404Carg04553Silver-seed gourdcarcarB306