CmaCh14G017140 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G017140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCma_Chr14 : 12651874 .. 12652493 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACGCTCAGCCATTTAACCTCCATCCTTCCTGTACAACTTCAGACATACCCCACCAGGCCCACCGCTCTCTCCGCCGCCTCCAGCCTCCTCCCTCTCAAGCAAGTCCACGATCGAATCCTCCGATTCAAATTCGAACGCTCCGATTCTGATTCCCGAGATTCATGGGCTCGTGTCAAAGTTGGGATTTGGGTCAGACCCATTTGTGGAAATGGGGTTGGTTAGAATGTACGCAGGCTGTGGAAGGATAATGGAAGCTCGGTTGGTGTTCGATAAAATGTCTCACAGGGATGTCGTTACTTGGAGCATCATGATTGATGGGTATGAAACTAATGTCGTTGCTCTGCATTTACTAGTGATGATGAATTCGGTAAAATTCATTTGGTTTAAAATTTTCTTGCGAAGTTGGAATCCCCTGGCCACATGTAACTTTGTGTGTATTCTTGTATGCCAAATGTGGGAGTCTAGAAGGAGCGAGAGAAGTCTTCAGAAAGATGCCAAAGAAGAATGTAATATCTTGGACAAGTATGATTAATGCTCTTGCAATACATGGAGAATCTGCTCATAATGCTTTAAGCCTATTACATCAAATCTTCTGGGAGAAGCTCTTGAGGTGA

mRNA sequence

ATGGAAACGCTCAGCCATTTAACCTCCATCCTTCCTGTACAACTTCAGACATACCCCACCAGGCCCACCGCTCTCTCCGCCGCCTCCAGCCTCCTCCCTCTCAAGCAAGTCCACGATCGAATCCTCCGATTCAAATTCGAACGCTCCGATTCTGATTCCCGAGATTCATGGGCTCGTGTCAAAGTTGGGATTTGGGTCAGACCCATTTGTGGAAATGGGGTTGGCTGTGGAAGGATAATGGAAGCTCGGTTGGTGTTCGATAAAATGTCTCACAGGGATGTCGTTACTTGGAGCATCATGATTGATGGTGATGATGAATTCGTTGGAATCCCCTGGCCACATGTAACTTTGTGTGTATTCTTGTATGCCAAATGTGGGAGTCTAGAAGGAGCGAGAGAAGTCTTCAGAAAGATGCCAAAGAAGAATGTAATATCTTGGACAAGTATGATTAATGCTCTTGCAATACATGGAGAATCTGCTCATAATGCTTTAAGCCTATTACATCAAATCTTCTGGGAGAAGCTCTTGAGGTGA

Coding sequence (CDS)

ATGGAAACGCTCAGCCATTTAACCTCCATCCTTCCTGTACAACTTCAGACATACCCCACCAGGCCCACCGCTCTCTCCGCCGCCTCCAGCCTCCTCCCTCTCAAGCAAGTCCACGATCGAATCCTCCGATTCAAATTCGAACGCTCCGATTCTGATTCCCGAGATTCATGGGCTCGTGTCAAAGTTGGGATTTGGGTCAGACCCATTTGTGGAAATGGGGTTGGCTGTGGAAGGATAATGGAAGCTCGGTTGGTGTTCGATAAAATGTCTCACAGGGATGTCGTTACTTGGAGCATCATGATTGATGGTGATGATGAATTCGTTGGAATCCCCTGGCCACATGTAACTTTGTGTGTATTCTTGTATGCCAAATGTGGGAGTCTAGAAGGAGCGAGAGAAGTCTTCAGAAAGATGCCAAAGAAGAATGTAATATCTTGGACAAGTATGATTAATGCTCTTGCAATACATGGAGAATCTGCTCATAATGCTTTAAGCCTATTACATCAAATCTTCTGGGAGAAGCTCTTGAGGTGA

Protein sequence

METLSHLTSILPVQLQTYPTRPTALSAASSLLPLKQVHDRILRFKFERSDSDSRDSWARVKVGIWVRPICGNGVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQIFWEKLLR
Homology
[Close]
BLAST of CmaCh14G017140 vs. Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-11
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 

Query: 121 LYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQIFWEKL 176
           +YAKCG L+  R+VF KMP++NV+SW+SMINAL++HGE A +ALSL  ++  E +
Sbjct: 388 MYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE-ASDALSLFARMKQENV 441

[Close]
BLAST of CmaCh14G017140 vs. Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 43/138 (31.16%), Postives = 64/138 (46.38%), Query Frame = 1 

Query: 17  TYPTRPTALSAASSLLPLKQVHDRILRFKFERSDSDSRDSWARVKVGIWVRPICGNGVGC 76
           T+P    A S    +L  +Q H +I+RF F+ +D    +S   +               C
Sbjct: 119 TFPFLIKASSEMECVLVGEQTHSQIVRFGFQ-NDVYVENSLVHMYAN------------C 178

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFR 136
           G I  A  +F +M  RDVV+W+ M+ G                  Y KCG +E ARE+F 
Sbjct: 179 GFIAAAGRIFGQMGFRDVVSWTSMVAG------------------YCKCGMVENAREMFD 225

Query: 137 KMPKKNVISWTSMINALA 155
           +MP +N+ +W+ MIN  A
Sbjct: 239 EMPHRNLFTWSIMINGYA 225

[Close]
BLAST of CmaCh14G017140 vs. Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFR 136
           GR  +ARLVFD M  ++ VTW+ MIDG                  Y + G ++ A ++F 
Sbjct: 123 GRFKKARLVFDYMEDKNSVTWNTMIDG------------------YMRSGQVDNAAKMFD 182

Query: 137 KMPKKNVISWTSMINALAIHG 158
           KMP++++ISWT+MIN     G
Sbjct: 183 KMPERDLISWTAMINGFVKKG 185

[Close]
BLAST of CmaCh14G017140 vs. Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 71  GNGVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEG 130
           G  V  G + +AR +FD+M  RD+++W+ M+DG                  YA+C  +  
Sbjct: 193 GGLVKAGELRDARRLFDEMPQRDLISWNTMLDG------------------YARCREMSK 252

Query: 131 AREVFRKMPKKNVISWTSMINALAIHGE 159
           A E+F KMP++N +SW++M+   +  G+
Sbjct: 253 AFELFEKMPERNTVSWSTMVMGYSKAGD 262

[Close]
BLAST of CmaCh14G017140 vs. Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-09
Identity = 41/161 (25.47%), Postives = 76/161 (47.20%), Query Frame = 1 

Query: 16  QTYPTR---PTALSAASSLLPLKQVHDRILRFKFERSDSDSRDSWARVKVGIWVRPICGN 75
           +TY T    PTA    + L  + ++H+   R  F+  DS S  SW  +  G +   +   
Sbjct: 9   RTYSTTIPPPTANVRITHLSRIGKIHEA--RKLFDSCDSKSISSWNSMVAGYFANLMP-- 68

Query: 76  GVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAR 135
                   +AR +FD+M  R++++W+ ++ G                  Y K G ++ AR
Sbjct: 69  -------RDARKLFDEMPDRNIISWNGLVSG------------------YMKNGEIDEAR 128

Query: 136 EVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQIFWE 174
           +VF  MP++NV+SWT+++     +G+     + +   +FW+
Sbjct: 129 KVFDLMPERNVVSWTALVKGYVHNGK-----VDVAESLFWK 135

[Close]
BLAST of CmaCh14G017140 vs. TrEMBL
Match: A5C734_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032407 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.1e-12
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 71  GNGVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVG-----------------IPWP 130
           G  V CG +  A+ +FD+M  RDVV+WSIMIDG  + +G                 + W 
Sbjct: 184 GGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWN 243

Query: 131 HVTLCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQI 171
            +   +  YAK G +E ARE+F KM +KNVISW+ MI+  A H +S   AL+L  Q+
Sbjct: 244 SM---IDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDS-KEALNLFRQM 296

[Close]
BLAST of CmaCh14G017140 vs. TrEMBL
Match: W9R134_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005425 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.7e-12
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 93  DVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINA 152
           D   W + I  D    G   P     V +YAKCGSLE AREVF KM +KNVISWTSMINA
Sbjct: 373 DKANW-MHIYADRNGFGGALPVSNALVDMYAKCGSLERAREVFEKMQRKNVISWTSMINA 432

Query: 153 LAIHGESAHNALSLLHQI 171
            A+HG+ A NALSL H++
Sbjct: 433 CAMHGD-AVNALSLFHRM 448

[Close]
BLAST of CmaCh14G017140 vs. TrEMBL
Match: D7TEQ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02700 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 71  GNGVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVG-----------------IPWP 130
           G  V CG +  A+ +FD+M  RDVV+WSIMIDG  + +G                 + W 
Sbjct: 184 GGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWN 243

Query: 131 HVTLCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQI 171
            +   +  YAK G +E ARE+F KM +KNVISW+ MI+  A H +S   AL+L  Q+
Sbjct: 244 SM---IDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDS-KEALNLFRQM 296

[Close]
BLAST of CmaCh14G017140 vs. TrEMBL
Match: A0A103XTI2_CYNCS (Pentatricopeptide repeat-containing protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_001290 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-11
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 1 

Query: 74  VGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVG-----------------IPWPHVT 133
           VGCG I+EA+ +FD+MS RDVV+WSIMIDG  + +G                 + W    
Sbjct: 127 VGCGDIVEAQKMFDQMSERDVVSWSIMIDGYGKKLGDIIHARSLFDRMHKRDLVSW---N 186

Query: 134 LCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGE--SAHNALSLL 168
             +  YAK G +  ARE+F +M  KNVISW+ MI+  + H +   A N  +L+
Sbjct: 187 TMIDSYAKVGDMVAARELFDEMEHKNVISWSIMIDGYSQHQDPKEALNVFNLM 236

[Close]
BLAST of CmaCh14G017140 vs. TrEMBL
Match: V7CG37_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G044500g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-11
Identity = 47/146 (32.19%), Postives = 65/146 (44.52%), Query Frame = 1 

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDG--------------------------------- 136
           G + +AR +FD++  +D+V WS MI G                                 
Sbjct: 288 GLVEDARFIFDQIVDKDLVCWSAMISGYAESDQPQEALRLFNEMQRQRIVPDQITMLSVI 347

Query: 137 -------------------DDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFRKMPKKNVI 171
                              D    G   P     + +YAKCG+L  AREVF  MP+KNVI
Sbjct: 348 SACAHVGALVKARWIHSYADKNGFGRALPINNALIDMYAKCGNLARAREVFENMPRKNVI 407

[Close]
BLAST of CmaCh14G017140 vs. TAIR10
Match: AT4G14820.1 (AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1 

Query: 121 LYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQIFWEKL 176
           +YAKCG L+  R+VF KMP++NV+SW+SMINAL++HGE A +ALSL  ++  E +
Sbjct: 388 MYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE-ASDALSLFARMKQENV 441

[Close]
BLAST of CmaCh14G017140 vs. TAIR10
Match: AT5G06540.1 (AT5G06540.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.8e-12
Identity = 43/138 (31.16%), Postives = 64/138 (46.38%), Query Frame = 1 

Query: 17  TYPTRPTALSAASSLLPLKQVHDRILRFKFERSDSDSRDSWARVKVGIWVRPICGNGVGC 76
           T+P    A S    +L  +Q H +I+RF F+ +D    +S   +               C
Sbjct: 119 TFPFLIKASSEMECVLVGEQTHSQIVRFGFQ-NDVYVENSLVHMYAN------------C 178

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFR 136
           G I  A  +F +M  RDVV+W+ M+ G                  Y KCG +E ARE+F 
Sbjct: 179 GFIAAAGRIFGQMGFRDVVSWTSMVAG------------------YCKCGMVENAREMFD 225

Query: 137 KMPKKNVISWTSMINALA 155
           +MP +N+ +W+ MIN  A
Sbjct: 239 EMPHRNLFTWSIMINGYA 225

[Close]
BLAST of CmaCh14G017140 vs. TAIR10
Match: AT1G05750.1 (AT1G05750.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFR 136
           GR  +ARLVFD M  ++ VTW+ MIDG                  Y + G ++ A ++F 
Sbjct: 123 GRFKKARLVFDYMEDKNSVTWNTMIDG------------------YMRSGQVDNAAKMFD 182

Query: 137 KMPKKNVISWTSMINALAIHG 158
           KMP++++ISWT+MIN     G
Sbjct: 183 KMPERDLISWTAMINGFVKKG 185

[Close]
BLAST of CmaCh14G017140 vs. TAIR10
Match: AT3G29230.1 (AT3G29230.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 71  GNGVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEG 130
           G  V  G + +AR +FD+M  RD+++W+ M+DG                  YA+C  +  
Sbjct: 193 GGLVKAGELRDARRLFDEMPQRDLISWNTMLDG------------------YARCREMSK 252

Query: 131 AREVFRKMPKKNVISWTSMINALAIHGE 159
           A E+F KMP++N +SW++M+   +  G+
Sbjct: 253 AFELFEKMPERNTVSWSTMVMGYSKAGD 262

[Close]
BLAST of CmaCh14G017140 vs. TAIR10
Match: AT1G09410.1 (AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-10
Identity = 41/161 (25.47%), Postives = 76/161 (47.20%), Query Frame = 1 

Query: 16  QTYPTR---PTALSAASSLLPLKQVHDRILRFKFERSDSDSRDSWARVKVGIWVRPICGN 75
           +TY T    PTA    + L  + ++H+   R  F+  DS S  SW  +  G +   +   
Sbjct: 9   RTYSTTIPPPTANVRITHLSRIGKIHEA--RKLFDSCDSKSISSWNSMVAGYFANLMP-- 68

Query: 76  GVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAR 135
                   +AR +FD+M  R++++W+ ++ G                  Y K G ++ AR
Sbjct: 69  -------RDARKLFDEMPDRNIISWNGLVSG------------------YMKNGEIDEAR 128

Query: 136 EVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQIFWE 174
           +VF  MP++NV+SWT+++     +G+     + +   +FW+
Sbjct: 129 KVFDLMPERNVVSWTALVKGYVHNGK-----VDVAESLFWK 135

[Close]
BLAST of CmaCh14G017140 vs. NCBI nr
Match: gi|1021491210|ref|XP_016188625.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Arachis ipaensis])

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 52/146 (35.62%), Postives = 72/146 (49.32%), Query Frame = 1 

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDGDDE------------------------------ 136
           G + EAR++FD+M  +D+V WS MI G  E                              
Sbjct: 315 GMVKEARMIFDEMIEKDLVCWSAMISGYAESDQPHEALKLFDEMQLRRIVPDQITMLSVI 374

Query: 137 ----FVGI----PWPHVTL--------------CVFLYAKCGSLEGAREVFRKMPKKNVI 171
                VG+     W H  +               + +YAKCGSL+ AREVF  MP+KNVI
Sbjct: 375 SACSHVGVLEKAKWVHAYVDKNGFRRALSVNNALIDMYAKCGSLDRAREVFENMPRKNVI 434

[Close]
BLAST of CmaCh14G017140 vs. NCBI nr
Match: gi|1012057058|ref|XP_015953927.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Arachis duranensis])

HSP 1 Score: 84.3 bits (207), Expect = 2.3e-13
Identity = 52/146 (35.62%), Postives = 72/146 (49.32%), Query Frame = 1 

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDG--------------DD----------------- 136
           G + EAR++FD+M  +D+V WS MI G              D+                 
Sbjct: 315 GMVKEARMIFDEMIEKDLVCWSAMISGYAESDQPHEALKLFDEMQLHRIVPDQITMLSVI 374

Query: 137 ---EFVGI----PWPHVTL--------------CVFLYAKCGSLEGAREVFRKMPKKNVI 171
                VG      W H  +               + +YAKCGSL+ AREVF  MP+KNVI
Sbjct: 375 SACAHVGALEKAKWVHTYVDKNGFGRALSVNNALIDMYAKCGSLDRAREVFENMPRKNVI 434

[Close]
BLAST of CmaCh14G017140 vs. NCBI nr
Match: gi|1012214991|ref|XP_015934189.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820-like [Arachis duranensis])

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-13
Identity = 52/146 (35.62%), Postives = 72/146 (49.32%), Query Frame = 1 

Query: 77  GRIMEARLVFDKMSHRDVVTWSIMIDG--------------DD----------------- 136
           G   EAR++FD+M  +D+V WS MI G              D+                 
Sbjct: 108 GMDKEARMIFDEMIEKDLVCWSAMISGYAESDQPHEALKLFDEIQLRRIVPDQITMLSVI 167

Query: 137 ---EFVGI----PWPHVTL--------------CVFLYAKCGSLEGAREVFRKMPKKNVI 171
                VG      W H  +               + +YAKCGSL+ AREVF+ MP+KNVI
Sbjct: 168 SACAHVGALEKAKWVHTYVDKNGFGRALSVNNALIDMYAKCGSLDRAREVFKNMPRKNVI 227

[Close]
BLAST of CmaCh14G017140 vs. NCBI nr
Match: gi|147807930|emb|CAN62155.1| (hypothetical protein VITISV_032407 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 7.3e-12
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = 1 

Query: 71  GNGVGCGRIMEARLVFDKMSHRDVVTWSIMIDGDDEFVG-----------------IPWP 130
           G  V CG +  A+ +FD+M  RDVV+WSIMIDG  + +G                 + W 
Sbjct: 184 GGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWN 243

Query: 131 HVTLCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINALAIHGESAHNALSLLHQI 171
            +   +  YAK G +E ARE+F KM +KNVISW+ MI+  A H +S   AL+L  Q+
Sbjct: 244 SM---IDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDS-KEALNLFRQM 296

[Close]
BLAST of CmaCh14G017140 vs. NCBI nr
Match: gi|703097553|ref|XP_010096146.1| (hypothetical protein L484_005425 [Morus notabilis])

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 44/78 (56.41%), Postives = 51/78 (65.38%), Query Frame = 1 

Query: 93  DVVTWSIMIDGDDEFVGIPWPHVTLCVFLYAKCGSLEGAREVFRKMPKKNVISWTSMINA 152
           D   W + I  D    G   P     V +YAKCGSLE AREVF KM +KNVISWTSMINA
Sbjct: 373 DKANW-MHIYADRNGFGGALPVSNALVDMYAKCGSLERAREVFEKMQRKNVISWTSMINA 432

Query: 153 LAIHGESAHNALSLLHQI 171
            A+HG+ A NALSL H++
Sbjct: 433 CAMHGD-AVNALSLFHRM 448

The following BLAST results are available for this feature:
BLAST of CmaCh14G017140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP311_ARATH4.7e-1156.36Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN... [more]
PP367_ARATH1.4e-1031.16Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN... [more]
PPR13_ARATH2.0e-0938.27Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidop... [more]
PP261_ARATH2.6e-0931.82Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN... [more]
PPR25_ARATH2.6e-0925.47Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN... [more]
BLAST of CmaCh14G017140 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C734_VITVI5.1e-1240.17Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032407 PE=4 SV=1[more]
W9R134_9ROSA8.7e-1256.41Uncharacterized protein OS=Morus notabilis GN=L484_005425 PE=4 SV=1[more]
D7TEQ6_VITVI1.1e-1140.17Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g02700 PE=4 SV=... [more]
A0A103XTI2_CYNCS1.1e-1139.82Pentatricopeptide repeat-containing protein (Fragment) OS=Cynara cardunculus var... [more]
V7CG37_PHAVU3.3e-1132.19Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G044500g PE=4 SV=1[more]
BLAST of CmaCh14G017140 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G14820.12.7e-1256.36 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G06540.17.8e-1231.16 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G05750.11.1e-1038.27 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G29230.11.5e-1031.82 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G09410.11.5e-1025.47 pentatricopeptide (PPR) repeat-containing protein[more]
BLAST of CmaCh14G017140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1021491210|ref|XP_016188625.1|2.7e-1435.62PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Arachis ipaens... [more]
gi|1012057058|ref|XP_015953927.1|2.3e-1335.62PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Arachis durane... [more]
gi|1012214991|ref|XP_015934189.1|6.6e-1335.62PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g... [more]
gi|147807930|emb|CAN62155.1|7.3e-1240.17hypothetical protein VITISV_032407 [Vitis vinifera][more]
gi|703097553|ref|XP_010096146.1|1.2e-1156.41hypothetical protein L484_005425 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G017140.1CmaCh14G017140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 121..143
score: 0.0026coord: 144..158
score:
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 76..170
score: 9.3
NoneNo IPR availablePANTHERPTHR24015:SF581SUBFAMILY NOT NAMEDcoord: 76..170
score: 9.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G017140CmoCh06G014060Cucurbita moschata (Rifu)cmacmoB271
CmaCh14G017140Lsi05G016110Bottle gourd (USVL1VR-Ls)cmalsiB245
CmaCh14G017140Cla97C05G086260Watermelon (97103) v2cmawmbB263
CmaCh14G017140Bhi01G000577Wax gourdcmawgoB0328
CmaCh14G017140Carg17425Silver-seed gourdcarcmaB0847
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh14G017140CmaCh06G014020Cucurbita maxima (Rimu)cmacmaB284
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G017140Wax gourdcmawgoB0312
CmaCh14G017140Cucurbita maxima (Rimu)cmacmaB248
CmaCh14G017140Cucurbita maxima (Rimu)cmacmaB249
CmaCh14G017140Cucumber (Gy14) v1cgycmaB0665
CmaCh14G017140Cucumber (Gy14) v1cgycmaB0709
CmaCh14G017140Cucurbita moschata (Rifu)cmacmoB245
CmaCh14G017140Cucurbita moschata (Rifu)cmacmoB250
CmaCh14G017140Cucurbita moschata (Rifu)cmacmoB251
CmaCh14G017140Cucurbita moschata (Rifu)cmacmoB279
CmaCh14G017140Wild cucumber (PI 183967)cmacpiB255
CmaCh14G017140Cucumber (Chinese Long) v2cmacuB253
CmaCh14G017140Melon (DHL92) v3.5.1cmameB220
CmaCh14G017140Melon (DHL92) v3.5.1cmameB242
CmaCh14G017140Watermelon (Charleston Gray)cmawcgB215
CmaCh14G017140Watermelon (Charleston Gray)cmawcgB233
CmaCh14G017140Watermelon (Charleston Gray)cmawcgB235
CmaCh14G017140Watermelon (97103) v1cmawmB242
CmaCh14G017140Watermelon (97103) v1cmawmB223
CmaCh14G017140Watermelon (97103) v1cmawmB250
CmaCh14G017140Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G017140Cucurbita pepo (Zucchini)cmacpeB292
CmaCh14G017140Bottle gourd (USVL1VR-Ls)cmalsiB225
CmaCh14G017140Cucumber (Gy14) v2cgybcmaB318
CmaCh14G017140Melon (DHL92) v3.6.1cmamedB273
CmaCh14G017140Silver-seed gourdcarcmaB0140
CmaCh14G017140Silver-seed gourdcarcmaB0313
CmaCh14G017140Silver-seed gourdcarcmaB0453
CmaCh14G017140Silver-seed gourdcarcmaB1174
CmaCh14G017140Cucumber (Chinese Long) v3cmacucB0291
CmaCh14G017140Watermelon (97103) v2cmawmbB266
CmaCh14G017140Watermelon (97103) v2cmawmbB280