CmaCh14G010940 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G010940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTRYPTOPHAN SYNTHASE ALPHA CHAIN family protein
LocationCma_Chr14 : 7833589 .. 7834401 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTATGAAAGCATTCTGCCGCCATTCTTTTCGCCTCTGGTTTTCGAAAACTTGTCGATACAACAACGCAACACTGCTTGTTCTTGGCAACTTCAGCGGTCGTAAACCAAATAGAAAACCGAAACTCCATTGACAATCTGAAATTCCACCAAACCCCTCTTTAGCAAATGGATATTGCTTTCAAATCTTCGAGGTTTCTTCCCCTCAACAAGATACACACTACGCGCATCGTTTCCCCACGTCCTTGTACCATTTCCGTCTTCCAATCCAAGCGCTTTGCTCCGATTGCCGCCCTTACAGCCTCCCCTGCTGCTGGATTGTCCGAAACATTCAACAAACTGAGAGAGCAGGGCAAGGTAAATGTCTCTTTGTACTGTTGATGGAATTGATTACGGAGAGCCATTAGATAGAAAATTAAAAGTATTAGAAACTGATTGGTTCTATCTGCTACTTCGTTTGTGGTCTGATGGGATTTTTTCATTGATCAACGTTGTTCTTACTGCATGCATGTTTTAAAGGTCGCATTGATCCCCTACATCACTGCTGGTGATCCTGATCTTTCAACCACGGCGGAGGCATTGAAGGTGCTTTCCACTTGTGGATCAGATATAATTGAACTTGGGGTTCCATATTCGGATCCCTTGGCAGATGGTCTGTTATACAGGTTTTTTTTCCTTTCTTTTTTTCCTTCCATTTCTCCATTTTTAATCTATTGTTCCTTATTCAGCTGTTTTATGAATGTTTTTCTGTAGGCTGCAGCCACTCGGGCCTTGGCTAGGGAGACAAACTTTAATGCAATCATTTCTATGCTGA

mRNA sequence

TTTTATGAAAGCATTCTGCCGCCATTCTTTTCGCCTCTGGTTTTCGAAAACTTGTCGATACAACAACGCAACACTGCTTGTTCTTGGCAACTTCAGCGGTCGTAAACCAAATAGAAAACCGAAACTCCATTGACAATCTGAAATTCCACCAAACCCCTCTTTAGCAAATGGATATTGCTTTCAAATCTTCGAGGTTTCTTCCCCTCAACAAGATACACACTACGCGCATCGTTTCCCCACGTCCTTGTACCATTTCCGTCTTCCAATCCAAGCGCTTTGCTCCGATTGCCGCCCTTACAGCCTCCCCTGCTGCTGGATTGTCCGAAACATTCAACAAACTGAGAGAGCAGGGCAAGGTCGCATTGATCCCCTACATCACTGCTGGTGATCCTGATCTTTCAACCACGGCGGAGGCATTGAAGGTGCTTTCCACTTGTGGATCAGATATAATTGAACTTGGGGTTCCATATTCGGATCCCTTGGCAGATGGTCTGTTATACAGGCTGCAGCCACTCGGGCCTTGGCTAGGGAGACAAACTTTAATGCAATCATTTCTATGCTGA

Coding sequence (CDS)

ATGGATATTGCTTTCAAATCTTCGAGGTTTCTTCCCCTCAACAAGATACACACTACGCGCATCGTTTCCCCACGTCCTTGTACCATTTCCGTCTTCCAATCCAAGCGCTTTGCTCCGATTGCCGCCCTTACAGCCTCCCCTGCTGCTGGATTGTCCGAAACATTCAACAAACTGAGAGAGCAGGGCAAGGTCGCATTGATCCCCTACATCACTGCTGGTGATCCTGATCTTTCAACCACGGCGGAGGCATTGAAGGTGCTTTCCACTTGTGGATCAGATATAATTGAACTTGGGGTTCCATATTCGGATCCCTTGGCAGATGGTCTGTTATACAGGCTGCAGCCACTCGGGCCTTGGCTAGGGAGACAAACTTTAATGCAATCATTTCTATGCTGA

Protein sequence

MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGLLYRLQPLGPWLGRQTLMQSFLC
Homology
[Close]
BLAST of CmaCh14G010940 vs. Swiss-Prot
Match: TRPA2_ARATH (Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.2e-28
Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 1 

Query: 1   MDIAFKSSRFL---PLNKIHTTRIVSPRPCTISVFQSKRFAPIAAL-TASPAAGLSETFN 60
           M IAFKS  F    P ++I   R  SP   ++S    KRF P+A+L T+SP  GL++TF 
Sbjct: 1   MAIAFKSGVFFLQSPKSQIGF-RHSSPPDSSLSF---KRFTPMASLSTSSPTLGLADTFT 60

Query: 61  KLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           +L++QGKVA IPYITAGDPDLSTTAEALKVL  CGSDIIELGVPYSDPLADG
Sbjct: 61  QLKKQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. Swiss-Prot
Match: TRPA1_ARATH (Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 8.0e-24
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 44  TASPAAGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSD 103
           T S   GLSETF +L+ QGKVALIPYITAGDPDLSTTA+ALKVL +CGSDIIELGVPYSD
Sbjct: 6   TPSSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSD 65

Query: 104 PLADG 109
           PLADG
Sbjct: 66  PLADG 70

[Close]
BLAST of CmaCh14G010940 vs. Swiss-Prot
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 

Query: 51  LSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           ++E F  LR QG  ALIP+ITAGDPDLSTTA+AL++L   G+D+IELGVPYSDPLADG
Sbjct: 4   VTECFRSLRSQGNCALIPFITAGDPDLSTTAQALRILDRAGADLIELGVPYSDPLADG 61

[Close]
BLAST of CmaCh14G010940 vs. Swiss-Prot
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpA PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-17
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 1 

Query: 55  FNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           FN LR++G+ ALIP++TAGDPDL+TTAEAL++L   G+D+IELGVPYSDPLADG
Sbjct: 8   FNALRQRGECALIPFLTAGDPDLATTAEALRILDRAGADLIELGVPYSDPLADG 61

[Close]
BLAST of CmaCh14G010940 vs. Swiss-Prot
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-16
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 

Query: 51  LSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           +SE F  L++ G+ ALIP+ITAGDPDL TT +ALK+L   G+D IELGVPYSDPLADG
Sbjct: 4   VSERFRSLKQAGQCALIPFITAGDPDLETTEQALKILDAAGADFIELGVPYSDPLADG 61

[Close]
BLAST of CmaCh14G010940 vs. TrEMBL
Match: A0A0A0LD81_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843770 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.4e-43
Identity = 93/108 (86.11%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60
           MDIAFKSSR LPLNKI  T I SPRPC ISV QSKRFAP+AAL A P  GLSETF  LRE
Sbjct: 1   MDIAFKSSRILPLNKIPNTLIFSPRPCKISVSQSKRFAPMAALAAYPVVGLSETFKNLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           QGKVALIPYITAGDPDLSTTAEALKVLS CGSDIIELGVPYSDPLADG
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSKCGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. TrEMBL
Match: A0A0A0LKV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G225330 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.3e-38
Identity = 85/108 (78.70%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60
           MDI   SSR    NKI TT I  P PC ISVFQSKR  P+A+LTAS A GLSETF+KL+E
Sbjct: 1   MDIVLNSSRLFQFNKIPTTLIFPPHPCKISVFQSKRVVPMASLTASSAVGLSETFSKLKE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           QGKVA IPYITAGDPDLSTTAEALKVLST GSDIIELGVPYSDPLADG
Sbjct: 61  QGKVAFIPYITAGDPDLSTTAEALKVLSTSGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. TrEMBL
Match: V4TUM1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021275mg PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-29
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 7   SSRFLPLNKIHTTRIVSPR-PCTISVFQSKRFAPIAALTASPAAGLSETFNKLREQGKVA 66
           ++ F+ L   H   +  PR PC  S    KRF P+AALTASP  GL+ETF +L++QGKVA
Sbjct: 7   TTNFVHLKNPHAHYL--PRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKVA 66

Query: 67  LIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           LIPYITAGDPDLSTTAEALK+L +CGSDIIELGVPYSDPLADG
Sbjct: 67  LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG 107

[Close]
BLAST of CmaCh14G010940 vs. TrEMBL
Match: A0A067FZB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021527mg PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.4e-29
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 7   SSRFLPLNKIHTTRIVSPR-PCTISVFQSKRFAPIAALTASPAAGLSETFNKLREQGKVA 66
           ++ F+ L   H   +  PR PC  S    KRF P+AALTASP  GL+ETF +L++QGKVA
Sbjct: 7   TTNFVHLKNPHAHYL--PRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKVA 66

Query: 67  LIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           LIPYITAGDPDLSTTAEALK+L +CGSDIIELGVPYSDPLADG
Sbjct: 67  LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG 107

[Close]
BLAST of CmaCh14G010940 vs. TrEMBL
Match: A0A072U2V8_MEDTR (Indole-3-glycerol phosphate lyase IGL1 OS=Medicago truncatula GN=MTR_7g102980 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.6e-29
Identity = 73/111 (65.77%), Postives = 84/111 (75.68%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHT---TRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNK 60
           M IAFKSS FL  NK +T       S +P  ISV   KR+  +AA+      G+SETFN+
Sbjct: 1   MAIAFKSSCFLQFNKPNTGFGLSFSSRKPVIISV---KRYTSVAAIKTMETVGISETFNR 60

Query: 61  LREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           L++QGKVALIP+ITAGDPDLSTTAEALKVL +CGSDIIELGVPYSDPLADG
Sbjct: 61  LKKQGKVALIPFITAGDPDLSTTAEALKVLDSCGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. TAIR10
Match: AT3G54640.1 (AT3G54640.1 tryptophan synthase alpha chain)

HSP 1 Score: 124.4 bits (311), Expect = 5.2e-29
Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = 1 

Query: 1   MDIAFKSSRFL---PLNKIHTTRIVSPRPCTISVFQSKRFAPIAAL-TASPAAGLSETFN 60
           M IAFKS  F    P ++I   R  SP   ++S    KRF P+A+L T+SP  GL++TF 
Sbjct: 1   MAIAFKSGVFFLQSPKSQIGF-RHSSPPDSSLSF---KRFTPMASLSTSSPTLGLADTFT 60

Query: 61  KLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           +L++QGKVA IPYITAGDPDLSTTAEALKVL  CGSDIIELGVPYSDPLADG
Sbjct: 61  QLKKQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. TAIR10
Match: AT4G02610.1 (AT4G02610.1 Aldolase-type TIM barrel family protein)

HSP 1 Score: 111.3 bits (277), Expect = 4.5e-25
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1 

Query: 44  TASPAAGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSD 103
           T S   GLSETF +L+ QGKVALIPYITAGDPDLSTTA+ALKVL +CGSDIIELGVPYSD
Sbjct: 6   TPSSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSD 65

Query: 104 PLADG 109
           PLADG
Sbjct: 66  PLADG 70

[Close]
BLAST of CmaCh14G010940 vs. NCBI nr
Match: gi|659130730|ref|XP_008465320.1| (PREDICTED: tryptophan synthase alpha chain-like [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-43
Identity = 93/108 (86.11%), Postives = 95/108 (87.96%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60
           MDIAFK SR LPLNKI  T I SPRPC ISV Q+KRFAP+AAL A P  GLSETF KLRE
Sbjct: 1   MDIAFKPSRILPLNKIPNTLIFSPRPCKISVSQTKRFAPMAALAAYPVVGLSETFKKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. NCBI nr
Match: gi|449446897|ref|XP_004141207.1| (PREDICTED: tryptophan synthase alpha chain [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 7.7e-43
Identity = 93/108 (86.11%), Postives = 94/108 (87.04%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60
           MDIAFKSSR LPLNKI  T I SPRPC ISV QSKRFAP+AAL A P  GLSETF  LRE
Sbjct: 1   MDIAFKSSRILPLNKIPNTLIFSPRPCKISVSQSKRFAPMAALAAYPVVGLSETFKNLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           QGKVALIPYITAGDPDLSTTAEALKVLS CGSDIIELGVPYSDPLADG
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSKCGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. NCBI nr
Match: gi|449455268|ref|XP_004145375.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 3.4e-38
Identity = 85/108 (78.70%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60
           MDI   SSR    NKI TT I  P PC ISVFQSKR  P+A+LTAS A GLSETF+KL+E
Sbjct: 1   MDIVLNSSRLFQFNKIPTTLIFPPHPCKISVFQSKRVVPMASLTASSAVGLSETFSKLKE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           QGKVA IPYITAGDPDLSTTAEALKVLST GSDIIELGVPYSDPLADG
Sbjct: 61  QGKVAFIPYITAGDPDLSTTAEALKVLSTSGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. NCBI nr
Match: gi|659096912|ref|XP_008449352.1| (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.3e-37
Identity = 84/108 (77.78%), Postives = 88/108 (81.48%), Query Frame = 1 

Query: 1   MDIAFKSSRFLPLNKIHTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60
           MD    SSR    NKI TT I  P PC ISVFQSKR  P+A+LTAS A GLSETF+KL+E
Sbjct: 1   MDTVLNSSRLFQFNKIPTTLIFPPHPCKISVFQSKRVVPMASLTASSAVGLSETFSKLKE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           QGKVA IPYITAGDPDLSTTAEALKVLST GSDIIELGVPYSDPLADG
Sbjct: 61  QGKVAFIPYITAGDPDLSTTAEALKVLSTSGSDIIELGVPYSDPLADG 108

[Close]
BLAST of CmaCh14G010940 vs. NCBI nr
Match: gi|641849692|gb|KDO68566.1| (hypothetical protein CISIN_1g021527mg [Citrus sinensis])

HSP 1 Score: 135.6 bits (340), Expect = 6.4e-29
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 7   SSRFLPLNKIHTTRIVSPR-PCTISVFQSKRFAPIAALTASPAAGLSETFNKLREQGKVA 66
           ++ F+ L   H   +  PR PC  S    KRF P+AALTASP  GL+ETF +L++QGKVA
Sbjct: 7   TTNFVHLKNPHAHYL--PRLPCHKSTLSLKRFTPMAALTASPTVGLAETFTRLKKQGKVA 66

Query: 67  LIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 109
           LIPYITAGDPDLSTTAEALK+L +CGSDIIELGVPYSDPLADG
Sbjct: 67  LIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADG 107

The following BLAST results are available for this feature:
BLAST of CmaCh14G010940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TRPA2_ARATH9.2e-2864.29Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana GN=TSA1 P... [more]
TRPA1_ARATH8.0e-2483.08Tryptophan synthase alpha chain OS=Arabidopsis thaliana GN=TRPA1 PE=1 SV=2[more]
TRPA_MICAN1.1e-1770.69Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=t... [more]
TRPA_SYNY33.3e-1772.22Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ... [more]
TRPA_SYNP21.6e-1667.24Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 70... [more]
BLAST of CmaCh14G010940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD81_CUCSA5.4e-4386.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843770 PE=3 SV=1[more]
A0A0A0LKV4_CUCSA2.3e-3878.70Uncharacterized protein OS=Cucumis sativus GN=Csa_2G225330 PE=3 SV=1[more]
V4TUM1_9ROSI4.4e-2967.96Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021275mg PE=3 SV=1[more]
A0A067FZB6_CITSI4.4e-2967.96Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021527mg PE=3 SV=1[more]
A0A072U2V8_MEDTR7.6e-2965.77Indole-3-glycerol phosphate lyase IGL1 OS=Medicago truncatula GN=MTR_7g102980 PE... [more]
BLAST of CmaCh14G010940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G54640.15.2e-2964.29 tryptophan synthase alpha chain[more]
AT4G02610.14.5e-2583.08 Aldolase-type TIM barrel family protein[more]
BLAST of CmaCh14G010940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130730|ref|XP_008465320.1|3.5e-4386.11PREDICTED: tryptophan synthase alpha chain-like [Cucumis melo][more]
gi|449446897|ref|XP_004141207.1|7.7e-4386.11PREDICTED: tryptophan synthase alpha chain [Cucumis sativus][more]
gi|449455268|ref|XP_004145375.1|3.4e-3878.70PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis sativus][more]
gi|659096912|ref|XP_008449352.1|1.3e-3777.78PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo][more]
gi|641849692|gb|KDO68566.1|6.4e-2967.96hypothetical protein CISIN_1g021527mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002028Trp_synthase_suA
IPR011060RibuloseP-bd_barrel
IPR013785Aldolase_TIM
IPR018204Trp_synthase_alpha_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004834tryptophan synthase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006568tryptophan metabolic process
GO:0008152metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0006568 tryptophan metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004834 tryptophan synthase activity
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G010940.1CmaCh14G010940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002028Tryptophan synthase, alpha chainPFAMPF00290Trp_syntAcoord: 55..108
score: 5.5
IPR011060Ribulose-phosphate binding barrelunknownSSF51366Ribulose-phoshate binding barrelcoord: 51..109
score: 6.97
IPR013785Aldolase-type TIM barrelGENE3DG3DSA:3.20.20.70coord: 51..108
score: 1.1
IPR018204Tryptophan synthase, alpha chain, active sitePROSITEPS00167TRP_SYNTHASE_ALPHAcoord: 95..108
scor
NoneNo IPR availablePANTHERPTHR10314SER/THR DEHYDRATASE, TRP SYNTHASEcoord: 58..98
score: 1.2
NoneNo IPR availablePANTHERPTHR10314:SF88TRYPTOPHAN SYNTHASE ALPHA CHAIN-RELATEDcoord: 58..98
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh14G010940Cucsa.340510Cucumber (Gy14) v1cgycmaB0929
CmaCh14G010940Cla017172Watermelon (97103) v1cmawmB230
CmaCh14G010940Csa3G843770Cucumber (Chinese Long) v2cmacuB255
CmaCh14G010940MELO3C026887Melon (DHL92) v3.5.1cmameB232
CmaCh14G010940ClCG10G013360Watermelon (Charleston Gray)cmawcgB221
CmaCh14G010940CSPI03G40780Wild cucumber (PI 183967)cmacpiB257
CmaCh14G010940CmoCh14G011470Cucurbita moschata (Rifu)cmacmoB246
CmaCh14G010940Lsi03G012990Bottle gourd (USVL1VR-Ls)cmalsiB240
CmaCh14G010940Cp4.1LG03g09210Cucurbita pepo (Zucchini)cmacpeB284
CmaCh14G010940MELO3C026887.2Melon (DHL92) v3.6.1cmamedB264
CmaCh14G010940CsaV3_3G043270Cucumber (Chinese Long) v3cmacucB0289
CmaCh14G010940Cla97C10G196170Watermelon (97103) v2cmawmbB251
CmaCh14G010940Bhi11G001297Wax gourdcmawgoB0305
CmaCh14G010940CsGy3G038240Cucumber (Gy14) v2cgybcmaB316
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh14G010940Cucurbita pepo (Zucchini)cmacpeB283
CmaCh14G010940Cucurbita pepo (Zucchini)cmacpeB293
CmaCh14G010940Cucumber (Gy14) v2cgybcmaB320
CmaCh14G010940Melon (DHL92) v3.6.1cmamedB257
CmaCh14G010940Silver-seed gourdcarcmaB0383
CmaCh14G010940Cucumber (Chinese Long) v3cmacucB0293
CmaCh14G010940Watermelon (97103) v2cmawmbB248
CmaCh14G010940Wax gourdcmawgoB0289
CmaCh14G010940Cucurbita maxima (Rimu)cmacmaB283
CmaCh14G010940Cucurbita moschata (Rifu)cmacmoB270
CmaCh14G010940Cucurbita moschata (Rifu)cmacmoB273
CmaCh14G010940Wild cucumber (PI 183967)cmacpiB251
CmaCh14G010940Cucumber (Chinese Long) v2cmacuB249
CmaCh14G010940Melon (DHL92) v3.5.1cmameB226
CmaCh14G010940Watermelon (Charleston Gray)cmawcgB224
CmaCh14G010940Watermelon (97103) v1cmawmB227