CmaCh12G010590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G010590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr12 : 8368070 .. 8370382 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTCATCCGGCCCAAGATTCGGCCCTTATAAAGCCCAAGATTCTCCTCAACACATGGCTGCACCAGCTGAAGTAAGTTGGATGTTCTTCGCGTAATTTCCTATTACTTTTTTGTTCTTGCTGTTTTTCTATAATGAATTTCTATAAACGAACGGAATTTTCTTTATGTAGGTAATAATAGTTTGAATTAAGTTTTGTTCGTTAGCTCATGTTGCGAATTTGGTGATTTTCTTGTTGGATAAGGTCGAAAGATCAGTTTCCTACAGTGAGCATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGGATCATTTACATCGGAATGCCTGTAAGTGCTTGAATTAGTGTTTGTCCAGTGCTATACGATTTAACTCGTTACTCGATGAACTATTCAACGAATAGAAATGGAGAATTTACGACTGTTTTTTCAACAACGTGTTGTCGAGATGTTTCATAAGAAGAAAAAATAAAAAGAAGAAGCATGTTCTTCGAACTTGTAAAAAATAGAAAGGTGCATCTCATGATAATCACATATTTTCGACCTCTTGAGACGTACAGAGTGATGAAAATTCTAGTTCAGGAATGAGTGAGTCATGCTGTTTTAGGAACCTTGTTTGTTGAACTGAAAGTATCAATTGGAGTACTTTGATATCTTGATCACATTAGAATAGATTTTGTGAGTACATTCAAATGCTGAATGTGAAGTTCGGCACTAATTCTTGAAATTCTTGGCAAGTTCTCAATTTATTTGAACTGACTTTCATTTATTTCCTCTCGACTTGCATAAGCTTTATTGAAATGGACATTCACTATATAAGTGTATTACGGTTTTTTTAAAAATTAATTTCGAGGCATAATCGATTTTGAATGTTTAAGAAACGATTGTGCATTCGTTCTGAGATAGTTTTTGACTTCCATCTTATAGAAGAAGTTTTCTGCTTCACGCAAGCATGTCATATGGTTACTTACCTAAAATCTCCTCATTCAATTATTTCTGCTTTCAGTTTGTTCCGGCTGTCAGAGAGCTAGTTATTGCTGAACTGATGTACCTGCAATGGATGGATCCAAAAGAACCAATATATCTTTATATAAACTCCACAGGAACAACTCGAGATGATGACGAAACTGTAAGCTTTTAATTTATTCAGCTACCTGAAACAAGTGAAATTAAGTTGTAAAGGGCATGCATTTCTTTCCTCATGCTTTACAATATCATCTGCCTACATTTTTTAGGTTTTGTATTCAGACTATAAATCTGGCTCGTTTATCTACGCGTTGACATGAACATCAACTTGTTTGTCATGATCAGGAGTTCCTTTGTTTGAGATCTTACAGGACTCATTTTTTAATTTGTTCATCATTAATAATTAAGAAAAACAATTAAAATGAGATTGTAATTTTTAGATTTTTTCTTCCAAAAGTATGTTTAATTGTAATTGCTAAGAGCAGCTTCTTGATCCACAATCTGTGAAATTGGGCTGGGTTTGATGCTGCTCGTGACGTTCTTATTCGTGCAAAAGAGGTCAAGATCCTCCTATAGCCTTGTAATTTATTTTAAAGTAGAACTCAGTTTATTTGACTCTGATTTTTGCTGGATCACTTAGCCCTTCGATTCAAGAGGTGAAAAAGGGAATTCTATTCAAAATCTCAATCATTTCCTAAAATTTTCAATGATTATTATTGGGGGGGAAAGTTTTTCATCCACTCAGCATCTTTTTTAAAGAATACAAGTGGATCTTTGTATATTTCAGCTCTTTTTTCCTGTCTAACAAAGCGAAGCACGTTGGAAATGTAAGCCTAGGTTATCAGAAACCACACACCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGTTCTCATGACTTTGCTTTTGGTTTCCCCAAAAGACCTCATACCAATGGAGATTTATTCCTTATAGACCCATGATCATCCTCTTAATTAGCCAATGTGGAATTCCCTCCTAGCCATCCTCAACATAGGCAACATTTATTTCTACTCTTTTTTTGAACTCACATGTCCGGACGTACCATATAATTCATAATACAACTTCAATATTTTGTTAGTAACTGTGATGAGAAGACCATTGTACGTGGATGTACGTCAAGAGAGAGAGAATTTGGAGTTATAGACAAGGTAACCTAACGCACAGATTTCTTCAGGGTATAACACGATGCACATGCTTTGTTGCTTATAATTGTAGTATATAATTCTAATTTGGCAAGTTGGCACCAGATTCTTTGGCGCGGTCAGGAGACGATTATGGCTGATGTCGCTGCCCCAAAGGAATGA

mRNA sequence

CCATTTCATCCGGCCCAAGATTCGGCCCTTATAAAGCCCAAGATTCTCCTCAACACATGGCTGCACCAGCTGAAGTCGAAAGATCAGTTTCCTACAGTGAGCATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGGATCATTTACATCGGAATGCCTTTTGTTCCGGCTGAACAACTCGAGATGATGACGAAACTTAACTGTGATGAGAAGACCATTGTACGTGGATGTACGTCAAGAGAGAGAGAATTTGGAGTTATAGACAAGATTCTTTGGCGCGGTCAGGAGACGATTATGGCTGATGTCGCTGCCCCAAAGGAATGA

Coding sequence (CDS)

ATGGCTGCACCAGCTGAAGTCGAAAGATCAGTTTCCTACAGTGAGCATACGTCGAGGAGGCCGCCGCCGGAGTTGCCGTCTCTATTACTTCATGGAAGGATCATTTACATCGGAATGCCTTTTGTTCCGGCTGAACAACTCGAGATGATGACGAAACTTAACTGTGATGAGAAGACCATTGTACGTGGATGTACGTCAAGAGAGAGAGAATTTGGAGTTATAGACAAGATTCTTTGGCGCGGTCAGGAGACGATTATGGCTGATGTCGCTGCCCCAAAGGAATGA

Protein sequence

MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAEQLEMMTKLNCDEKTIVRGCTSREREFGVIDKILWRGQETIMADVAAPKE

Homology

[Close]

BLAST of CmaCh12G010590 vs. Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-12
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           M++PA+VERSV+Y+EH  R PPP+LPS+LL GRI+YIGMP VPA
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPA 141

[Close]

BLAST of CmaCh12G010590 vs. TrEMBL
Match: A0A0A0LLW4_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_2G031150 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERS+SY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSISYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. TrEMBL
Match: C6T928_SOYBN (ATP-dependent Clp protease proteolytic subunit OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-13
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAEQLEMMTKLNC 56
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP VPA    ++ +L C
Sbjct: 90  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMC 144

[Close]

BLAST of CmaCh12G010590 vs. TrEMBL
Match: A0A151TW37_CAJCA (ATP-dependent Clp protease proteolytic subunit OS=Cajanus cajan GN=KK1_010453 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRIIYIGMP VPA
Sbjct: 95  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIIYIGMPLVPA 138

[Close]

BLAST of CmaCh12G010590 vs. TrEMBL
Match: A0A0J8CL57_BETVU (ATP-dependent Clp protease proteolytic subunit OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g075790 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRIIYIGMP VPA
Sbjct: 79  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIIYIGMPLVPA 122

[Close]

BLAST of CmaCh12G010590 vs. TrEMBL
Match: A0A0R0F2N6_SOYBN (ATP-dependent Clp protease proteolytic subunit OS=Glycine max GN=GLYMA_19G233600 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-12
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 93  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPA 136

[Close]

BLAST of CmaCh12G010590 vs. TAIR10
Match: AT1G09130.3 (AT1G09130.3 ATP-dependent caseinolytic (Clp) protease/crotonase family protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-13
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           M++PA+VERSV+Y+EH  R PPP+LPS+LL GRI+YIGMP VPA
Sbjct: 98  MSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPA 141

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: gi|449454073|ref|XP_004144780.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-13
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERS+SY+EH SRRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 96  MAAPAQVERSISYNEHRSRRPPPDLPSLLLHGRIVYIGMPLVPA 139

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: gi|363807834|ref|NP_001241928.1| (uncharacterized protein LOC100809485 [Glycine max])

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-13
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPAEQLEMMTKLNC 56
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP VPA    ++ +L C
Sbjct: 90  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVVAELMC 144

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: gi|659070248|ref|XP_008454159.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MAAPA+VERSVSY+EH  RRPPP+LPSLLLHGRI+YIGMP VPA
Sbjct: 98  MAAPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPA 141

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: gi|870863040|gb|KMT14217.1| (hypothetical protein BVRB_4g075790 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRIIYIGMP VPA
Sbjct: 79  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIIYIGMPLVPA 122

[Close]

BLAST of CmaCh12G010590 vs. NCBI nr
Match: gi|731326490|ref|XP_010674045.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1


Query: 1   MAAPAEVERSVSYSEHTSRRPPPELPSLLLHGRIIYIGMPFVPA 45
           MA PA+VERSVSY+EH  RRPPP+LPSLLLHGRIIYIGMP VPA
Sbjct: 87  MATPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIIYIGMPLVPA 130

The following BLAST results are available for this feature:

BLAST of CmaCh12G010590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPR3_ARATH	6.6e-12	70.45	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]

BLAST of CmaCh12G010590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW4_CUCSA	2.4e-13	84.09	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_2G03115...	[more]
C6T928_SOYBN	3.2e-13	69.09	ATP-dependent Clp protease proteolytic subunit OS=Glycine max PE=2 SV=1	[more]
A0A151TW37_CAJCA	1.6e-12	84.09	ATP-dependent Clp protease proteolytic subunit OS=Cajanus cajan GN=KK1_010453 PE...	[more]
A0A0J8CL57_BETVU	1.6e-12	84.09	ATP-dependent Clp protease proteolytic subunit OS=Beta vulgaris subsp. vulgaris ...	[more]
A0A0R0F2N6_SOYBN	2.1e-12	81.82	ATP-dependent Clp protease proteolytic subunit OS=Glycine max GN=GLYMA_19G233600...	[more]

BLAST of CmaCh12G010590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09130.3	3.7e-13	70.45	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]

BLAST of CmaCh12G010590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454073\|ref\|XP_004144780.1\|	3.5e-13	84.09	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]
gi\|363807834\|ref\|NP_001241928.1\|	4.6e-13	69.09	uncharacterized protein LOC100809485 [Glycine max]	[more]
gi\|659070248\|ref\|XP_008454159.1\|	1.0e-12	84.09	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]
gi\|870863040\|gb\|KMT14217.1\|	2.3e-12	84.09	hypothetical protein BVRB_4g075790 [Beta vulgaris subsp. vulgaris]	[more]
gi\|731326490\|ref\|XP_010674045.1\|	2.3e-12	84.09	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023562	ClpP/TepA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G010590.1	CmaCh12G010590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 1..44 score: 2.6
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 1..44 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G010590	CsaV3_2G006650	Cucumber (Chinese Long) v3	cmacucB0202
CmaCh12G010590	Bhi06G001291	Wax gourd	cmawgoB0182
CmaCh12G010590	Carg26766	Silver-seed gourd	carcmaB1037
CmaCh12G010590	Carg23291	Silver-seed gourd	carcmaB1221

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G010590	Cucumber (Chinese Long) v3	cmacucB0184
CmaCh12G010590	Watermelon (97103) v2	cmawmbB175
CmaCh12G010590	Watermelon (97103) v2	cmawmbB180
CmaCh12G010590	Wax gourd	cmawgoB0236
CmaCh12G010590	Cucurbita maxima (Rimu)	cmacmaB190
CmaCh12G010590	Cucumber (Gy14) v1	cgycmaB0179
CmaCh12G010590	Cucumber (Gy14) v1	cgycmaB0520
CmaCh12G010590	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G010590	Cucurbita moschata (Rifu)	cmacmoB190
CmaCh12G010590	Wild cucumber (PI 183967)	cmacpiB160
CmaCh12G010590	Wild cucumber (PI 183967)	cmacpiB174
CmaCh12G010590	Cucumber (Chinese Long) v2	cmacuB159
CmaCh12G010590	Cucumber (Chinese Long) v2	cmacuB173
CmaCh12G010590	Melon (DHL92) v3.5.1	cmameB151
CmaCh12G010590	Melon (DHL92) v3.5.1	cmameB172
CmaCh12G010590	Watermelon (Charleston Gray)	cmawcgB156
CmaCh12G010590	Watermelon (Charleston Gray)	cmawcgB159
CmaCh12G010590	Watermelon (97103) v1	cmawmB158
CmaCh12G010590	Watermelon (97103) v1	cmawmB170
CmaCh12G010590	Cucurbita pepo (Zucchini)	cmacpeB171
CmaCh12G010590	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G010590	Bottle gourd (USVL1VR-Ls)	cmalsiB159
CmaCh12G010590	Bottle gourd (USVL1VR-Ls)	cmalsiB178
CmaCh12G010590	Cucumber (Gy14) v2	cgybcmaB054
CmaCh12G010590	Cucumber (Gy14) v2	cgybcmaB178
CmaCh12G010590	Melon (DHL92) v3.6.1	cmamedB166
CmaCh12G010590	Melon (DHL92) v3.6.1	cmamedB187