CmaCh12G008680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G008680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDUF761 domain protein
LocationCma_Chr12 : 6470701 .. 6470946 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAACCAACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTATTTAGATCCCGAGATGGTAGAAAGAGGCGAGATGAAACGATAGACGATACGAGAAAGGTGTGGCCGAGCGACGAAGACAAAGGCCGATATTGGGTGGCTGAGCCTGGCATTGATAGGAAGGCTAAGGCTTACATCGACAAGATCCATACCCAAATCCGCTCCTCTGGAACTGAATGA

mRNA sequence

ATGGCCTCAACCAACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTATTTAGATCCCGAGATGGTAGAAAGAGGCGAGATGAAACGATAGACGATACGAGAAAGGTGTGGCCGAGCGACGAAGACAAAGGCCGATATTGGGTGGCTGAGCCTGGCATTGATAGGAAGGCTAAGGCTTACATCGACAAGATCCATACCCAAATCCGCTCCTCTGGAACTGAATGA

Coding sequence (CDS)

ATGGCCTCAACCAACAACAAGAGACAAAAGCCGAAGTCGCCCTCGTGCTTCTTCTCGATCTTCAGCTTATTTAGATCCCGAGATGGTAGAAAGAGGCGAGATGAAACGATAGACGATACGAGAAAGGTGTGGCCGAGCGACGAAGACAAAGGCCGATATTGGGTGGCTGAGCCTGGCATTGATAGGAAGGCTAAGGCTTACATCGACAAGATCCATACCCAAATCCGCTCCTCTGGAACTGAATGA

Protein sequence

MASTNNKRQKPKSPSCFFSIFSLFRSRDGRKRRDETIDDTRKVWPSDEDKGRYWVAEPGIDRKAKAYIDKIHTQIRSSGTE
Homology
[Close]
BLAST of CmaCh12G008680 vs. TrEMBL
Match: A0A0A0LJ24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-25
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDGRKRRDE--TIDDTRKVWPSDEDKGRYWVAEP 61
          +S NNKRQK  KS SC FSIFSLF+SRDG KR D+  T+DDTRKVWPSD DKGR+WVAEP
Sbjct: 3  SSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIDKIHTQIRSSGTE 82
          GIDRKAKAYI+KIH QIRSS T+
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]
BLAST of CmaCh12G008680 vs. TrEMBL
Match: W9R5Q4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-11
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 3  STNNKRQKPKSPSCFFSIFSLFRSRDGRKRRDETIDDTRKVWPSDEDKGRYWVAEPGIDR 62
          + N+ RQK  S     S FSLFR +  R+  D  ++D R+VWPSDED+GR WVAEPGIDR
Sbjct: 4  NNNSSRQKKGS-----SFFSLFRFKRNRRVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDR 63

Query: 63 KAKAYIDKIHTQIRSS 79
          KA+A+I KIH  + ++
Sbjct: 64 KAEAFIAKIHKNMNTA 73

[Close]
BLAST of CmaCh12G008680 vs. TrEMBL
Match: V4SLM0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013222mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.5e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 12 KSPSCFFSIFSLFRSRDGRKRRDETIDDT----RKVWPSDEDKGRYWVAEPGIDRKAKAY 71
          K     FS+ ++F+SR   +R ++  DD     RK+WPSDEDKG YWVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDKIH 73
          I K H
Sbjct: 65 ITKFH 69

[Close]
BLAST of CmaCh12G008680 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-11
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 1 

Query: 6  NKRQKPKSPSCFFSIFSLFRSRDGRK-----RRDETIDD---TRKVWPSDEDKGRYWVAE 65
          N RQK    S  FSIFS F+SR GRK          +D+   + KVWPSDEDK  +WVAE
Sbjct: 4  NNRQKKAHAS--FSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAE 63

Query: 66 PGIDRKAKAYIDKIH 73
          PGIDRKAK YID+I+
Sbjct: 64 PGIDRKAKDYIDRIY 76

[Close]
BLAST of CmaCh12G008680 vs. TrEMBL
Match: A0A067E306_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040544mg PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 12 KSPSCFFSIFSLFRSRDGRKRRDETIDDT----RKVWPSDEDKGRYWVAEPGIDRKAKAY 71
          K     FS+ ++F+SR   +R ++  DD     RK+WPSDEDKG YWVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSAPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDKIH 73
          I K H
Sbjct: 65 IAKFH 69

[Close]
BLAST of CmaCh12G008680 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-10
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 1 

Query: 18 FSIFSLFRSRDG-RKRRDETIDD---TRKVWPSDEDKGRYWVAEPGIDRKAKAYIDKIH 73
          FS+FS F++R   R   D + DD   TRK   SDEDK RYWVAEPGIDRKA A+I K H
Sbjct: 13 FSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDK-RYWVAEPGIDRKASAFIAKFH 70

[Close]
BLAST of CmaCh12G008680 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 2.8e-09
Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 1 

Query: 25 RSRDGRKRRDETIDD---TRKVWPSDEDKGRYWVAEPGIDRKAKAYIDKIH 73
          RS   R   D + DD   TRK W SDEDK RYWVAEPGIDRKA A+I K H
Sbjct: 5  RSSHHRVEADASWDDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFH 54

[Close]
BLAST of CmaCh12G008680 vs. NCBI nr
Match: gi|700205910|gb|KGN61029.1| (hypothetical protein Csa_2G034820 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 64/83 (77.11%), Postives = 71/83 (85.54%), Query Frame = 1 

Query: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDGRKRRDE--TIDDTRKVWPSDEDKGRYWVAEP 61
          +S NNKRQK  KS SC FSIFSLF+SRDG KR D+  T+DDTRKVWPSD DKGR+WVAEP
Sbjct: 3  SSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIDKIHTQIRSSGTE 82
          GIDRKAKAYI+KIH QIRSS T+
Sbjct: 63 GIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]
BLAST of CmaCh12G008680 vs. NCBI nr
Match: gi|659070045|ref|XP_008453122.1| (PREDICTED: uncharacterized protein LOC103493929 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-25
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 1 

Query: 2  ASTNNKRQK-PKSPSCFFSIFSLFRSRDGRKRRDE--TIDDTRKVWPSDEDKGRYWVAEP 61
          +S NNKRQK PKS SC FSIF LF+SRDG KR D+  T+DDTRKVWPSD DKGR+WVAEP
Sbjct: 3  SSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVAEP 62

Query: 62 GIDRKAKAYIDKIHTQIRSS 79
          GIDRKAKAYI+KIH QIRSS
Sbjct: 63 GIDRKAKAYIEKIHHQIRSS 82

[Close]
BLAST of CmaCh12G008680 vs. NCBI nr
Match: gi|703093363|ref|XP_010094905.1| (hypothetical protein L484_022654 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 3  STNNKRQKPKSPSCFFSIFSLFRSRDGRKRRDETIDDTRKVWPSDEDKGRYWVAEPGIDR 62
          + N+ RQK  S     S FSLFR +  R+  D  ++D R+VWPSDED+GR WVAEPGIDR
Sbjct: 4  NNNSSRQKKGS-----SFFSLFRFKRNRRVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDR 63

Query: 63 KAKAYIDKIHTQIRSS 79
          KA+A+I KIH  + ++
Sbjct: 64 KAEAFIAKIHKNMNTA 73

[Close]
BLAST of CmaCh12G008680 vs. NCBI nr
Match: gi|567871495|ref|XP_006428337.1| (hypothetical protein CICLE_v10013222mg [Citrus clementina])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 12 KSPSCFFSIFSLFRSRDGRKRRDETIDDT----RKVWPSDEDKGRYWVAEPGIDRKAKAY 71
          K     FS+ ++F+SR   +R ++  DD     RK+WPSDEDKG YWVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSTPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDKIH 73
          I K H
Sbjct: 65 ITKFH 69

[Close]
BLAST of CmaCh12G008680 vs. NCBI nr
Match: gi|641826009|gb|KDO45256.1| (hypothetical protein CISIN_1g040544mg [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-10
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 12 KSPSCFFSIFSLFRSRDGRKRRDETIDDT----RKVWPSDEDKGRYWVAEPGIDRKAKAY 71
          K     FS+ ++F+SR   +R ++  DD     RK+WPSDEDKG YWVAEPGIDRKA A+
Sbjct: 5  KQKKSSFSLLNMFKSRRTNRRWEDPWDDVGSAPRKIWPSDEDKGAYWVAEPGIDRKASAF 64

Query: 72 IDKIH 73
          I K H
Sbjct: 65 IAKFH 69

The following BLAST results are available for this feature:
BLAST of CmaCh12G008680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh12G008680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ24_CUCSA1.1e-2577.11Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034820 PE=4 SV=1[more]
W9R5Q4_9ROSA1.2e-1152.63Uncharacterized protein OS=Morus notabilis GN=L484_022654 PE=4 SV=1[more]
V4SLM0_9ROSI7.5e-1153.85Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013222mg PE=4 SV=1[more]
A0A0A0KAK6_CUCSA9.8e-1156.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1[more]
A0A067E306_CITSI9.8e-1153.85Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040544mg PE=4 SV=1[more]
BLAST of CmaCh12G008680 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05858.17.4e-1059.32 unknown protein[more]
AT5G26620.12.8e-0962.75 unknown protein[more]
BLAST of CmaCh12G008680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205910|gb|KGN61029.1|1.5e-2577.11hypothetical protein Csa_2G034820 [Cucumis sativus][more]
gi|659070045|ref|XP_008453122.1|2.0e-2578.75PREDICTED: uncharacterized protein LOC103493929 [Cucumis melo][more]
gi|703093363|ref|XP_010094905.1|1.7e-1152.63hypothetical protein L484_022654 [Morus notabilis][more]
gi|567871495|ref|XP_006428337.1|1.1e-1053.85hypothetical protein CICLE_v10013222mg [Citrus clementina][more]
gi|641826009|gb|KDO45256.1|1.4e-1053.85hypothetical protein CISIN_1g040544mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G008680.1CmaCh12G008680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511FAMILY NOT NAMEDcoord: 4..81
score: 4.3
NoneNo IPR availablePANTHERPTHR33511:SF2SUBFAMILY NOT NAMEDcoord: 4..81
score: 4.3