Cla019996 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019996
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 25067951 .. 25068208 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCATCAGCCAACAACAAGACACAAAAGCGCCCCAAGCCCCCCTCGTGCTGGTTCTCCATCTTCGGCTTCTTCAAGTCTCGAGATGGCGGAAGAAGGCGGGACGATACGATGACAATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTCCCAAACCGAATGA

mRNA sequence

ATGCCCTCATCAGCCAACAACAAGACACAAAAGCGCCCCAAGCCCCCCTCGTGCTGGTTCTCCATCTTCGGCTTCTTCAAGTCTCGAGATGGCGGAAGAAGGCGGGACGATACGATGACAATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTCCCAAACCGAATGA

Coding sequence (CDS)

ATGCCCTCATCAGCCAACAACAAGACACAAAAGCGCCCCAAGCCCCCCTCGTGCTGGTTCTCCATCTTCGGCTTCTTCAAGTCTCGAGATGGCGGAAGAAGGCGGGACGATACGATGACAATGGAAGATACACGAAAGGTGTGGCCGAGCGATGGCGACAAAGGTCGACACTGGGTGGCTGAGCCTGGCATTGATAGAAAAGCCAAAGCTTATATCGATAAGATCCATTATCAAATCCGCTCCTCCCAAACCGAATGA

Protein sequence

MPSSANNKTQKRPKPPSCWFSIFGFFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDRKAKAYIDKIHYQIRSSQTE

Homology

[Close]

BLAST of Cla019996 vs. TrEMBL
Match: A0A0A0LJ24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034820 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.9e-33
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MPSSANNKTQKRPKPPSCWFSIFGFFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          M SSANNK QKR K  SC FSIF  FKSRDGG+R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSSQTE 86
          EPGIDRKAKAYI+KIH+QIRSSQT+
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]

BLAST of Cla019996 vs. TrEMBL
Match: W9R5Q4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022654 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 7  NKTQKRPKPPSCWFSIFGFFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDR 66
          N    R K  S +FS+F F ++R     R D   +ED R+VWPSD D+GR WVAEPGIDR
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR-----RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDR 63

Query: 67 KAKAYIDKIHYQIRSS 83
          KA+A+I KIH  + ++
Sbjct: 64 KAEAFIAKIHKNMNTA 73

[Close]

BLAST of Cla019996 vs. TrEMBL
Match: A0A0A0KBW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-10
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 12 RPKPPSCWFSIFGFFKSRDGGRRRDDTMT--------MEDTRKVWPSDGDKGRHWVAEPG 71
          R K     FSIF FFKSR G  R+ D           M  + KVWPSD DK  HWVAEPG
Sbjct: 5  RQKKSHSSFSIFSFFKSRRG--RKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPG 64

Query: 72 IDRKAKAYIDKIH 77
          IDRKAK YID+I+
Sbjct: 65 IDRKAKDYIDRIY 75

[Close]

BLAST of Cla019996 vs. TrEMBL
Match: A0A0A0KAK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-10
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 12 RPKPPSCWFSIFGFFKSRDGGRRRDDTMT--------MEDTRKVWPSDGDKGRHWVAEPG 71
          R K     FSIF FFKSR G  R+ D           M  + KVWPSD DK  HWVAEPG
Sbjct: 6  RQKKAHASFSIFSFFKSRRG--RKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPG 65

Query: 72 IDRKAKAYIDKIH 77
          IDRKAK YID+I+
Sbjct: 66 IDRKAKDYIDRIY 76

[Close]

BLAST of Cla019996 vs. TrEMBL
Match: A0A0A0K8W0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-10
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 12 RPKPPSCWFSIFGFFKSRDG--GRRRDDTMTMED---TRKVWPSDGDKGRHWVAEPGIDR 71
          R K     FSIF FFKS+ G  G   +     ED   + KVWPSD DKG  WVAEPGIDR
Sbjct: 6  RQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPGIDR 65

Query: 72 KAKAYIDKIHYQIRSSQTE 86
          KAK YID+I Y+ R  +TE
Sbjct: 66 KAKDYIDRI-YKNRVFETE 83

[Close]

BLAST of Cla019996 vs. NCBI nr
Match: gi|659070045|ref|XP_008453122.1| (PREDICTED: uncharacterized protein LOC103493929 [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 7.3e-34
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1  MPSSANNKTQKRPKPPSCWFSIFGFFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          M SSANNK QKRPK  SC FSIFG FKSRDGG+R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRPKSTSCCFSIFGLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSSQTE 86
          EPGIDRKAKAYI+KIH+QIRSS+ +
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSEPQ 85

[Close]

BLAST of Cla019996 vs. NCBI nr
Match: gi|700205910|gb|KGN61029.1| (hypothetical protein Csa_2G034820 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.8e-33
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MPSSANNKTQKRPKPPSCWFSIFGFFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVA 60
          M SSANNK QKR K  SC FSIF  FKSRDGG+R DD MTM+DTRKVWPSDGDKGRHWVA
Sbjct: 1  MASSANNKRQKRQKSTSCCFSIFSLFKSRDGGKRWDDAMTMDDTRKVWPSDGDKGRHWVA 60

Query: 61 EPGIDRKAKAYIDKIHYQIRSSQTE 86
          EPGIDRKAKAYI+KIH+QIRSSQT+
Sbjct: 61 EPGIDRKAKAYIEKIHHQIRSSQTQ 85

[Close]

BLAST of Cla019996 vs. NCBI nr
Match: gi|703093363|ref|XP_010094905.1| (hypothetical protein L484_022654 [Morus notabilis])

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1


Query: 7  NKTQKRPKPPSCWFSIFGFFKSRDGGRRRDDTMTMEDTRKVWPSDGDKGRHWVAEPGIDR 66
          N    R K  S +FS+F F ++R     R D   +ED R+VWPSD D+GR WVAEPGIDR
Sbjct: 4  NNNSSRQKKGSSFFSLFRFKRNR-----RVDDYAVEDMRRVWPSDEDRGR-WVAEPGIDR 63

Query: 67 KAKAYIDKIHYQIRSS 83
          KA+A+I KIH  + ++
Sbjct: 64 KAEAFIAKIHKNMNTA 73

[Close]

BLAST of Cla019996 vs. NCBI nr
Match: gi|700190665|gb|KGN45869.1| (hypothetical protein Csa_6G014890 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 7.3e-10
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 12 RPKPPSCWFSIFGFFKSRDGGRRRDDTMT--------MEDTRKVWPSDGDKGRHWVAEPG 71
          R K     FSIF FFKSR G  R+ D           M  + KVWPSD DK  HWVAEPG
Sbjct: 6  RQKKAHASFSIFSFFKSRRG--RKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEPG 65

Query: 72 IDRKAKAYIDKIH 77
          IDRKAK YID+I+
Sbjct: 66 IDRKAKDYIDRIY 76

[Close]

BLAST of Cla019996 vs. NCBI nr
Match: gi|700190663|gb|KGN45867.1| (hypothetical protein Csa_6G014870 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 7.3e-10
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 12 RPKPPSCWFSIFGFFKSRDGGRRRDDTMT--------MEDTRKVWPSDGDKGRHWVAEPG 71
          R K     FSIF FFKSR G  R+ D           M  + KVWPSD DK  HWVAEPG
Sbjct: 5  RQKKSHSSFSIFSFFKSRRG--RKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPG 64

Query: 72 IDRKAKAYIDKIH 77
          IDRKAK YID+I+
Sbjct: 65 IDRKAKDYIDRIY 75

The following BLAST results are available for this feature:

BLAST of Cla019996 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ24_CUCSA	1.9e-33	82.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034820 PE=4 SV=1	[more]
W9R5Q4_9ROSA	2.3e-10	50.00	Uncharacterized protein OS=Morus notabilis GN=L484_022654 PE=4 SV=1	[more]
A0A0A0KBW1_CUCSA	5.1e-10	54.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0KAK6_CUCSA	5.1e-10	54.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0K8W0_CUCSA	8.7e-10	54.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016905 PE=4 SV=1	[more]

BLAST of Cla019996 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070045\|ref\|XP_008453122.1\|	7.3e-34	82.35	PREDICTED: uncharacterized protein LOC103493929 [Cucumis melo]	[more]
gi\|700205910\|gb\|KGN61029.1\|	2.8e-33	82.35	hypothetical protein Csa_2G034820 [Cucumis sativus]	[more]
gi\|703093363\|ref\|XP_010094905.1\|	3.3e-10	50.00	hypothetical protein L484_022654 [Morus notabilis]	[more]
gi\|700190665\|gb\|KGN45869.1\|	7.3e-10	54.79	hypothetical protein Csa_6G014890 [Cucumis sativus]	[more]
gi\|700190663\|gb\|KGN45867.1\|	7.3e-10	54.79	hypothetical protein Csa_6G014870 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019996	Cla019996.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 11..85 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019996	Cla97C02G040410	Watermelon (97103) v2	wmwmbB316
Cla019996	Csa2G034820	Cucumber (Chinese Long) v2	cuwmB147
Cla019996	MELO3C004151	Melon (DHL92) v3.5.1	mewmB418
Cla019996	ClCG02G014640	Watermelon (Charleston Gray)	wcgwmB197
Cla019996	Cucsa.090340	Cucumber (Gy14) v1	cgywmB105
Cla019996	CmaCh05G010550	Cucurbita maxima (Rimu)	cmawmB764
Cla019996	CmaCh12G008680	Cucurbita maxima (Rimu)	cmawmB171
Cla019996	CmoCh05G010650	Cucurbita moschata (Rifu)	cmowmB757
Cla019996	CmoCh12G008740	Cucurbita moschata (Rifu)	cmowmB157
Cla019996	Lsi11G006650	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla019996	CsGy2G005150	Cucumber (Gy14) v2	cgybwmB140
Cla019996	MELO3C004151.2	Melon (DHL92) v3.6.1	medwmB407
Cla019996	Bhi06G001233	Wax gourd	wgowmB137

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019996	Silver-seed gourd	carwmB0563
Cla019996	Silver-seed gourd	carwmB0913
Cla019996	Cucumber (Chinese Long) v3	cucwmB159
Cla019996	Wax gourd	wgowmB135
Cla019996	Watermelon (97103) v1	wmwmB091
Cla019996	Melon (DHL92) v3.5.1	mewmB282
Cla019996	Watermelon (Charleston Gray)	wcgwmB242
Cla019996	Cucurbita pepo (Zucchini)	cpewmB113
Cla019996	Cucurbita pepo (Zucchini)	cpewmB807
Cla019996	Melon (DHL92) v3.6.1	medwmB275