CmaCh12G007880 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G007880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Stress responsive A/B Barrel Domain
Location	Cma_Chr12 : 5478150 .. 5479771 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGTGTCAGCGCTCACAGGGGGAAAAAACCTGTCACTCCCCGTCTCGACGTTCACCTGTTCGACGAAATGCCTCTCTATAAATTCTGCTCTTCAATTACCCCATTTCACCTGTGTTGTGAGTGAGTGAGCTTGGTTTTCCTACGCTGCCATGGCCGAGTTCAAGCACCTTGTCATTGCCAAGTTTAAGGAGAGTGTTAATGTGGAAGAGATTGTTGAGCAAGTGGAGAAGATGGTTTCTGATATTGACTATGTCAAGTCCTTTGAATGGTATCTCTCCCCTTTTTTTGCCCTTTATCTCTCTGTTGTGTAAGATGTTATGTGCTGTGAAGTCTCAATACCTTTAATGAATTTGAACCGTGATGTAATGACTCAAGCCCACCGCCGGTAGATATTGTTCTCTTTCAGCTTAAAACGTTCTGGAGAGGTTTCCACACCCTTATAAATGATGTTTTGTTCTCCTTCCCAACCGACATGGGATCTCACAATCCACCCCTTTTCAAGGCCCAGCATTCTCGCTGGCACTCGTTCCTTTCTCCAATTGATGTGGGACCCCCACCAAATCCACCTCCTTCGAGGTCCAGCTTCCGTGCTGGCACACCGCCTCGTGTCTACACCTTCGGAGAACAGCCTCCTCACTGACATATCGCTCGGTGTCTGGCTCTGATACCATTTGTAATGGTTCAAGTCCACCACTAATAAATATTGTCTTCTTTGAGCGGATTATGAGATCCCACGTCGGTTGGGGAGGAAAACGACACATTGTTTATAAAGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTGAAAATCTTGAAAGAAAGTTCGAAAGGAAAAATCCAAAGAAGACTATATCGACTAGCGCCTAGTGGTGGGCTTGAATTGTTACCCTAGAAGATTATAGATTATAGATTATAGATTATAGTGGTTATTTTTCAAAATTATGGCCGCATGAATGTTGATTTTTTTGAGTGAAATGTGGTTGGTTTGGACAGGGGACATGATGTTGAAGGGCAAGACATGGTGACACAAGGCTTCACGCACGTCTTCTCAATGACATTTGATGACAAAGAAGCCATCGCTTCATTTCTTACCCATCCTAAGCATCTTGAGTTCTGTCCCACTTTCAGTGCAGCCATTGACAAGATTATTGTCCTTGATTTCCCATCTCTTCTCGTCAAGCCACCTGCACTGCCACCCCCATCACCCGAAGCTGTTCCACCATCTGTGATGGCATCCACACCTTTACCACCACCACCACCGCCAGTATCAGCACCAGCACCACCACCGACACCGACACCGGCATCTGCTCCGGCATAAGATTGGAAACGTTAAAAAAATCGTAGTCTCATCTTTATTTGCAGTATGTAGTGTTGTGTTCTTCTGTTTGCTTTGAGAATCATGGGAAGTGAAGTGTTTAGTTAATGGGAAGAATGTGGTTGATGAAGATCCATGCATTTGGTTGCTATAATATAATATGTTCTTGCTATGTTTCTTTTTATTTCCTTGATTAATACTTACGTAGGATCTTCTTTTCGGCTTCCCTTCAAGTCTTCAAAACGACTCTGTTAATTAGAGGTTTTTACACCTTTATAAAGAATCTTTCATTTTTCTCGACGTGGG

mRNA sequence

GGTGTGTCAGCGCTCACAGGGGGAAAAAACCTGTCACTCCCCGTCTCGACGTTCACCTGTTCGACGAAATGCCTCTCTATAAATTCTGCTCTTCAATTACCCCATTTCACCTGTGTTGTGAGTGAGTGAGCTTGGTTTTCCTACGCTGCCATGGCCGAGTTCAAGCACCTTGTCATTGCCAAGTTTAAGGAGAGTGTTAATGTGGAAGAGATTGTTGAGCAAGTGGAGAAGATGGTTTCTGATATTGACTATGTCAAGTCCTTTGAATGGGGACATGATGTTGAAGGGCAAGACATGGTGACACAAGGCTTCACGCACGTCTTCTCAATGACATTTGATGACAAAGAAGCCATCGCTTCATTTCTTACCCATCCTAAGCATCTTGAGTTCTGTCCCACTTTCAGTGCAGCCATTGACAAGATTATTGTCCTTGATTTCCCATCTCTTCTCGTCAAGCCACCTGCACTGCCACCCCCATCACCCGAAGCTGTTCCACCATCTGTGATGGCATCCACACCTTTACCACCACCACCACCGCCAGTATCAGCACCAGCACCACCACCGACACCGACACCGGCATCTGCTCCGGCATAAGATTGGAAACGTTAAAAAAATCGTAGTCTCATCTTTATTTGCAGTATGTAGTGTTGTGTTCTTCTGTTTGCTTTGAGAATCATGGGAAGTGAAGTGTTTAGTTAATGGGAAGAATGTGGTTGATGAAGATCCATGCATTTGGTTGCTATAATATAATATGTTCTTGCTATGTTTCTTTTTATTTCCTTGATTAATACTTACGTAGGATCTTCTTTTCGGCTTCCCTTCAAGTCTTCAAAACGACTCTGTTAATTAGAGGTTTTTACACCTTTATAAAGAATCTTTCATTTTTCTCGACGTGGG

Coding sequence (CDS)

ATGGCCGAGTTCAAGCACCTTGTCATTGCCAAGTTTAAGGAGAGTGTTAATGTGGAAGAGATTGTTGAGCAAGTGGAGAAGATGGTTTCTGATATTGACTATGTCAAGTCCTTTGAATGGGGACATGATGTTGAAGGGCAAGACATGGTGACACAAGGCTTCACGCACGTCTTCTCAATGACATTTGATGACAAAGAAGCCATCGCTTCATTTCTTACCCATCCTAAGCATCTTGAGTTCTGTCCCACTTTCAGTGCAGCCATTGACAAGATTATTGTCCTTGATTTCCCATCTCTTCTCGTCAAGCCACCTGCACTGCCACCCCCATCACCCGAAGCTGTTCCACCATCTGTGATGGCATCCACACCTTTACCACCACCACCACCGCCAGTATCAGCACCAGCACCACCACCGACACCGACACCGGCATCTGCTCCGGCATAA

Protein sequence

MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSMTFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMASTPLPPPPPPVSAPAPPPTPTPASAPA

Homology

[Close]

BLAST of CmaCh12G007880 vs. Swiss-Prot
Match: Y5258_ARATH (Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.7e-27
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1


Query: 4   FKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSMTFD 63
           FKHLV+ KFKE   V+EI++ +E +VS ID VKSFEWG D E  DM+ QGFTH FSMTF+
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 64  DKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPP 110
           +K+   +F +HP H+EF   F+A IDKI++LDFP   VK   +  P
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111

[Close]

BLAST of CmaCh12G007880 vs. Swiss-Prot
Match: POP3_ARATH (Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana GN=HS1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-16
Identity = 37/95 (38.95%), Postives = 67/95 (70.53%), Query Frame = 1


Query: 5   KHLVIAKFKESVN---VEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSMT 64
           KH+++A FK+ V+   +EE+++    +V+ I+ +K+F WG DV  +++  QG+TH+F  T
Sbjct: 9   KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENL-HQGYTHIFEST 68

Query: 65  FDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDF 97
           F+ KEA+A ++ HP H+EF   F  ++DK++V+D+
Sbjct: 69  FESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102

[Close]

BLAST of CmaCh12G007880 vs. Swiss-Prot
Match: OLIAC_CANSA (Olivetolic acid cyclase OS=Cannabis sativa GN=OAC PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-08
Identity = 29/95 (30.53%), Postives = 52/95 (54.74%), Query Frame = 1


Query: 5  KHLVIAKFKESVNV---EEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSMT 64
          KHL++ KFK+ +     EE  +    +V+ I  +K   WG DV  Q    +G+TH+  +T
Sbjct: 4  KHLIVLKFKDEITEAQKEEFFKTYVNLVNIIPAMKDVYWGKDVT-QKNKEEGYTHIVEVT 63

Query: 65 FDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDF 97
          F+  E I  ++ HP H+ F   + +  +K+++ D+
Sbjct: 64 FESVETIQDYIIHPAHVGFGDVYRSFWEKLLIFDY 97

[Close]

BLAST of CmaCh12G007880 vs. TrEMBL
Match: A0A0A0LY53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G151000 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.9e-44
Identity = 112/152 (73.68%), Postives = 122/152 (80.26%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKHLV+AKFKE +NV+EIV QVEKMVSDID VKSFEWGHDVEGQDM+TQGFTHVFSM
Sbjct: 1   MGEFKHLVVAKFKEGLNVDEIVAQVEKMVSDIDSVKSFEWGHDVEGQDMLTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAI SFLTHPKHLEFCPTFSAAIDKI+VLDFPS+LVK  A+PPPSP+  PP  + 
Sbjct: 61  TFDDKEAITSFLTHPKHLEFCPTFSAAIDKIVVLDFPSILVK-AAVPPPSPQ--PPPALE 120

Query: 121 STPLPPPPP-----PVSAPAPPPTPTPASAPA 148
            TP    PP     P+  PA     TPASA A
Sbjct: 121 ETPEAALPPVLTSTPLPTPATAAAATPASASA 149

[Close]

BLAST of CmaCh12G007880 vs. TrEMBL
Match: A0A061GZS6_THECC (Stress responsive A/B Barrel Domain OS=Theobroma cacao GN=TCM_041496 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.1e-31
Identity = 67/105 (63.81%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M  FKHLV+ KFKE+V VEEIV+ +EK+VS++D VKSFEWG D+EGQ+M+ QGFTH F M
Sbjct: 71  MEGFKHLVVVKFKENVAVEEIVKGMEKLVSEVDAVKSFEWGQDIEGQEMLRQGFTHAFVM 130

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TFD KE   +F++HP H+EF  TFS AI+KI++LDFPS+L K PA
Sbjct: 131 TFDKKEDYTAFVSHPSHVEFSATFSTAIEKIVLLDFPSVLAKAPA 175

[Close]

BLAST of CmaCh12G007880 vs. TrEMBL
Match: V4UE32_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029614mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKHLVI KFKE V VE+IV+ ++K+VS+ID VKSFEWG DVEGQ+M+ QGFTH F M
Sbjct: 9   MGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLM 68

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TF+ KE   +F +HP H+EF  TFSAAI+KI++LDFP++L K PA
Sbjct: 69  TFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKAPA 113

[Close]

BLAST of CmaCh12G007880 vs. TrEMBL
Match: A0A067E3K9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033664mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKHLVI KFKE V VE+IV+ ++K+VS+ID VKSFEWG DVEGQ+M+ QGFTH F M
Sbjct: 9   MGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLM 68

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TF+ KE   +F +HP H+EF  TFSAAI+KI++LDFP++L K PA
Sbjct: 69  TFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKAPA 113

[Close]

BLAST of CmaCh12G007880 vs. TrEMBL
Match: I3SYE0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30
Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKH VI KFKE V VEE+ + +EK+VS+ID VKSFEWG D+E  D++ QGFTH F M
Sbjct: 1   MGEFKHFVIVKFKEDVVVEELTKAMEKLVSEIDAVKSFEWGQDIESLDILRQGFTHAFLM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TF  KE  A+F  HP H+EF  TFS+AI+KI+VLDFPS LVKPPA
Sbjct: 61  TFSKKEDFAAFQGHPNHVEFSATFSSAIEKIVVLDFPSTLVKPPA 105

[Close]

BLAST of CmaCh12G007880 vs. TAIR10
Match: AT5G22580.1 (AT5G22580.1 Stress responsive A/B Barrel Domain)

HSP 1 Score: 121.3 bits (303), Expect = 4.9e-28
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1


Query: 4   FKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSMTFD 63
           FKHLV+ KFKE   V+EI++ +E +VS ID VKSFEWG D E  DM+ QGFTH FSMTF+
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 64  DKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPP 110
           +K+   +F +HP H+EF   F+A IDKI++LDFP   VK   +  P
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111

[Close]

BLAST of CmaCh12G007880 vs. TAIR10
Match: AT3G17210.1 (AT3G17210.1 heat stable protein 1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 37/95 (38.95%), Postives = 67/95 (70.53%), Query Frame = 1


Query: 5   KHLVIAKFKESVN---VEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSMT 64
           KH+++A FK+ V+   +EE+++    +V+ I+ +K+F WG DV  +++  QG+TH+F  T
Sbjct: 9   KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENL-HQGYTHIFEST 68

Query: 65  FDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDF 97
           F+ KEA+A ++ HP H+EF   F  ++DK++V+D+
Sbjct: 69  FESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102

[Close]

BLAST of CmaCh12G007880 vs. NCBI nr
Match: gi|659071770|ref|XP_008461858.1| (PREDICTED: uncharacterized protein At5g22580-like [Cucumis melo])

HSP 1 Score: 189.1 bits (479), Expect = 5.4e-45
Identity = 113/154 (73.38%), Postives = 122/154 (79.22%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKHLV+AKFKE VNV+EIVEQVEKMVSDID VK FEWGHDVEGQDM+TQGFTHVFSM
Sbjct: 1   MGEFKHLVVAKFKEGVNVDEIVEQVEKMVSDIDSVKFFEWGHDVEGQDMLTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVK----PPALPPP-----SP 120
           TFDDKEAI SFLTHPKHLEFCPTFSAAID+I+VLDFPS+LVK    PP+ P P     +P
Sbjct: 61  TFDDKEAITSFLTHPKHLEFCPTFSAAIDQIVVLDFPSILVKVAAPPPSPPSPPASEATP 120

Query: 121 EAVPPSVMASTPLPPPPPPVSAPAPPPTPTPASA 146
           EA  P V+ ST LP P     A A  PTP  ASA
Sbjct: 121 EAALPPVLTSTLLPTP-----ATATAPTPASASA 149

[Close]

BLAST of CmaCh12G007880 vs. NCBI nr
Match: gi|449443414|ref|XP_004139472.1| (PREDICTED: uncharacterized protein At5g22580-like [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-44
Identity = 112/152 (73.68%), Postives = 122/152 (80.26%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKHLV+AKFKE +NV+EIV QVEKMVSDID VKSFEWGHDVEGQDM+TQGFTHVFSM
Sbjct: 1   MGEFKHLVVAKFKEGLNVDEIVAQVEKMVSDIDSVKSFEWGHDVEGQDMLTQGFTHVFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPALPPPSPEAVPPSVMA 120
           TFDDKEAI SFLTHPKHLEFCPTFSAAIDKI+VLDFPS+LVK  A+PPPSP+  PP  + 
Sbjct: 61  TFDDKEAITSFLTHPKHLEFCPTFSAAIDKIVVLDFPSILVK-AAVPPPSPQ--PPPALE 120

Query: 121 STPLPPPPP-----PVSAPAPPPTPTPASAPA 148
            TP    PP     P+  PA     TPASA A
Sbjct: 121 ETPEAALPPVLTSTPLPTPATAAAATPASASA 149

[Close]

BLAST of CmaCh12G007880 vs. NCBI nr
Match: gi|1009113513|ref|XP_015873186.1| (PREDICTED: uncharacterized protein At5g22580 [Ziziphus jujuba])

HSP 1 Score: 149.8 bits (377), Expect = 3.7e-33
Identity = 70/105 (66.67%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M +FKHLVI KFK+ V  +EI++ +EK+VS+ID VKSFEWGHD+E Q+ + QGFTH FSM
Sbjct: 1   MGDFKHLVIVKFKDDVVADEIIKGMEKLVSEIDSVKSFEWGHDIESQETLRQGFTHAFSM 60

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TF++KE  A+F +HPKHLEF  TFS AI+K +VLDFPSLLVKPPA
Sbjct: 61  TFNNKEDFAAFASHPKHLEFSATFSTAIEKFVVLDFPSLLVKPPA 105

[Close]

BLAST of CmaCh12G007880 vs. NCBI nr
Match: gi|590587294|ref|XP_007015930.1| (Stress responsive A/B Barrel Domain [Theobroma cacao])

HSP 1 Score: 142.9 bits (359), Expect = 4.5e-31
Identity = 67/105 (63.81%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M  FKHLV+ KFKE+V VEEIV+ +EK+VS++D VKSFEWG D+EGQ+M+ QGFTH F M
Sbjct: 71  MEGFKHLVVVKFKENVAVEEIVKGMEKLVSEVDAVKSFEWGQDIEGQEMLRQGFTHAFVM 130

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TFD KE   +F++HP H+EF  TFS AI+KI++LDFPS+L K PA
Sbjct: 131 TFDKKEDYTAFVSHPSHVEFSATFSTAIEKIVLLDFPSVLAKAPA 175

[Close]

BLAST of CmaCh12G007880 vs. NCBI nr
Match: gi|567863330|ref|XP_006424319.1| (hypothetical protein CICLE_v10029614mg [Citrus clementina])

HSP 1 Score: 140.2 bits (352), Expect = 2.9e-30
Identity = 68/105 (64.76%), Postives = 85/105 (80.95%), Query Frame = 1


Query: 1   MAEFKHLVIAKFKESVNVEEIVEQVEKMVSDIDYVKSFEWGHDVEGQDMVTQGFTHVFSM 60
           M EFKHLVI KFKE V VE+IV+ ++K+VS+ID VKSFEWG DVEGQ+M+ QGFTH F M
Sbjct: 9   MGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLM 68

Query: 61  TFDDKEAIASFLTHPKHLEFCPTFSAAIDKIIVLDFPSLLVKPPA 106
           TF+ KE   +F +HP H+EF  TFSAAI+KI++LDFP++L K PA
Sbjct: 69  TFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKAPA 113

The following BLAST results are available for this feature:

BLAST of CmaCh12G007880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5258_ARATH	8.7e-27	54.72	Stress-response A/B barrel domain-containing protein At5g22580 OS=Arabidopsis th...	[more]
POP3_ARATH	4.1e-16	38.95	Stress-response A/B barrel domain-containing protein HS1 OS=Arabidopsis thaliana...	[more]
OLIAC_CANSA	4.1e-08	30.53	Olivetolic acid cyclase OS=Cannabis sativa GN=OAC PE=1 SV=1	[more]

BLAST of CmaCh12G007880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY53_CUCSA	1.9e-44	73.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G151000 PE=4 SV=1	[more]
A0A061GZS6_THECC	3.1e-31	63.81	Stress responsive A/B Barrel Domain OS=Theobroma cacao GN=TCM_041496 PE=4 SV=1	[more]
V4UE32_9ROSI	2.0e-30	64.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029614mg PE=4 SV=1	[more]
A0A067E3K9_CITSI	2.0e-30	64.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033664mg PE=4 SV=1	[more]
I3SYE0_LOTJA	2.0e-30	64.76	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmaCh12G007880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22580.1	4.9e-28	54.72	Stress responsive A/B Barrel Domain	[more]
AT3G17210.1	2.3e-17	38.95	heat stable protein 1	[more]

BLAST of CmaCh12G007880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071770\|ref\|XP_008461858.1\|	5.4e-45	73.38	PREDICTED: uncharacterized protein At5g22580-like [Cucumis melo]	[more]
gi\|449443414\|ref\|XP_004139472.1\|	2.7e-44	73.68	PREDICTED: uncharacterized protein At5g22580-like [Cucumis sativus]	[more]
gi\|1009113513\|ref\|XP_015873186.1\|	3.7e-33	66.67	PREDICTED: uncharacterized protein At5g22580 [Ziziphus jujuba]	[more]
gi\|590587294\|ref\|XP_007015930.1\|	4.5e-31	63.81	Stress responsive A/B Barrel Domain [Theobroma cacao]	[more]
gi\|567863330\|ref\|XP_006424319.1\|	2.9e-30	64.76	hypothetical protein CICLE_v10029614mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011008	Dimeric_a/b-barrel
IPR013097	Dabb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G007880.1	CmaCh12G007880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011008	Dimeric alpha-beta barrel	unknown	SSF54909	Dimeric alpha+beta barrel	coord: 4..98 score: 3.75
IPR013097	Stress responsive alpha-beta barrel	PFAM	PF07876	Dabb	coord: 5..97 score: 7.2
IPR013097	Stress responsive alpha-beta barrel	SMART	SM00886	Dabb_2	coord: 4..98 score: 1.3
IPR013097	Stress responsive alpha-beta barrel	PROFILE	PS51502	S_R_A_B_BARREL	coord: 4..96 score: 26
None	No IPR available	GENE3D	G3DSA:3.30.70.900		coord: 2..98 score: 4.6
None	No IPR available	PANTHER	PTHR33178	FAMILY NOT NAMED	coord: 1..105 score: 1.7
None	No IPR available	PANTHER	PTHR33178:SF4	SUBFAMILY NOT NAMED	coord: 1..105 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G007880	Cucsa.199990	Cucumber (Gy14) v1	cgycmaB0593
CmaCh12G007880	Cla003534	Watermelon (97103) v1	cmawmB168
CmaCh12G007880	Csa1G151000	Cucumber (Chinese Long) v2	cmacuB163
CmaCh12G007880	MELO3C004785	Melon (DHL92) v3.5.1	cmameB148
CmaCh12G007880	ClCG01G012610	Watermelon (Charleston Gray)	cmawcgB151
CmaCh12G007880	CSPI01G14390	Wild cucumber (PI 183967)	cmacpiB163
CmaCh12G007880	CmoCh12G007980	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G007880	Lsi03G000960	Bottle gourd (USVL1VR-Ls)	cmalsiB168
CmaCh12G007880	Cp4.1LG07g06640	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G007880	MELO3C004785.2	Melon (DHL92) v3.6.1	cmamedB161
CmaCh12G007880	CsaV3_1G014560	Cucumber (Chinese Long) v3	cmacucB0188
CmaCh12G007880	Cla97C01G011810	Watermelon (97103) v2	cmawmbB161
CmaCh12G007880	Bhi08G000074	Wax gourd	cmawgoB0220
CmaCh12G007880	CsGy1G014320	Cucumber (Gy14) v2	cgybcmaB058
CmaCh12G007880	Carg26933	Silver-seed gourd	carcmaB0978

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G007880	Cucurbita maxima (Rimu)	cmacmaB006
CmaCh12G007880	Cucurbita maxima (Rimu)	cmacmaB174
CmaCh12G007880	Cucurbita moschata (Rifu)	cmacmoB179