CmaCh12G007320 (gene) Cucurbita maxima (Rimu)

NameCmaCh12G007320
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNAD(P)H-quinone oxidoreductase subunit H, chloroplastic
LocationCma_Chr12 : 4438871 .. 4444500 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAAAATTCATTCAGCTCAGTTATTTCGCAAGAAGAAAAAAAAGAAAATGGAGGATCCGTTGAATTTCAAGTAGTCAGTTTCACCAATAAGATACGAAGACTTACTTCCCATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAGAGGTCTACGTAAAATTCTCGGAAAACGCCAACGATTACTTTCTTATTTATCAAAGATAAATAAAATGCGTTATAAAGAATTAATTAATCAATTGGATATTCGGGAGTCAAAAACTCAGTAATTTTAAAAGTAATTTTTAATTATTTGATTTATTAGATCTTGAATTTTTATGAACTTATTTGCATTTTCAGCAATTCATGGAAAGCTGAATCGAGGAAAAACTTATGAATGGACCAGCTACAAGAAAAGACCTCATGATAGTCAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTCGACTCATCCTTACTTTGGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGCAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACTGTAAATGGTCCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAATTGAGTCGTATAGCTTCTCATCTGTTATGGCTTGGCCCTTTTATGGCGGATATTGGCGCACAGACTCCCTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCAGCCACCGGTATGAGAATGATGCATAATTATTTTCGTATCGGGGGAGTCGCGGCTGATCTACCGGGTTTGGTTGGGTTAACAATCCAACTAGAAGAATTTTTAGAATACTTATGGATTTCGAGAAAAATAATATTAAAATATTCGAAAAATGAAAAATTACAAAAATACCCCTTAAAATATGAATAATTACGAAAAATGTCATTCTGCTCAAAATCACGACTTCAACCGCCACCTCCTGCACAATCCATCAAATCTCAAAATCCGGCCATTGGATCTTCTCCAAAATTAGAGACAAGTTAAAATGTTTGTAAATCACTACATCCAAATTCAAATTGGAAGTTGTTAGCTCGCTTATCGAACAAGATATTTCTGAAGGATTATCCAAAAAAATTTAATCTCCAAATCTCGATGATAATGGAGGTTTCATCGTCGGTATAAGCTTCCCCTATAAATTTTGAAGTTGGGACAATAGCATAGAACAAGAATCGAATGCTGCAATAAGTGTTTAAATTTTGTGCTTCTACTCTCGAATTTCTTTTAAACTCGAGAGCAATTCTCCACCATTTCTCTTTAAACTTGTTCCAACAATTTCTAAACAAGATTACGCACAAGTTTTGGGAAGAAATCGAGTGCTGAAAGTGCCTATAAACCATTCCCCCCCAATCCAATATGCATTCGAAGAGCTTCAAGGAAAACTCGAAAATCCAATCCGAGGATATACGATAATTGGCCGAGCAAGAAAAATCTCAATCAGTTTCTGCACCTCAAGAACGTGCCTAATTGAAGGAAATTCGTTTCACGTAAAATTTAGGGGTAAGTATCAAATTCTTATATACCGTCCCTTTAACCATTTAAAATAATAATAATAAATTAATTAAAATTAAAAAAAAAAAAACAACTTTTTCCCACAATTATCTCTCATCAACCCCGGTAACAACAAAAAGAAAAAGAAAAACAAGTGAGATTTATTTGAGAAAAAAAAAAAAGAATGATCTTTAATCAATTGAGATTCAGCTAAAGATTTCCTTAAAGATAGATCTGATTATATATTAAATCTCATTTCCTTTTATCTTATTTATAGAAATCACAACCAATTAGATCTTCATTTAATTATTACAATGGTCTAGATTTGACTTAGAAACTAAATGTCAATCATTTATACAATTCTAGTAAATCACTCCAAATTAGTAATATTAGATCAAATTTTTATCAGTAGCCAAATGAATAGATAAAGATAGAATGCCAAAAAAAACTTCGGGAGACACTGAGATAAGGAAAGATTTGGAAACAGAGACGGAGATACACAGATCCACCTGAAATTTGGAATATATAAGAACAAAATTAAAAGTATAAAAAAAGAAAGAATTAGGGATAACAAAATTAAAAATTTAACCGATAAAAAAAAAAAAAAAGAAGATTAGGGAATTAAAAGCTGAGAAAAGCNAATGAAAAGACTGATAAAAAAAAAGAATTAAAAGGCCACCGATAAAAAAAAGAATTAAAAGACAACCAATAAAAAAAGAATTAAAAGGCAACAGATAAAAAATAAAATTAGGAAATTAAAAACCACACACTAAATAAGAGAAAGTAAATAGAGGGTAAATATAGAGTAGTATAACTTAAAGAGACCTAACATAACGTTCTATGTTTTTAACATATAACATTTCATCATATACACATCATACCATGACATATTGCATCACAATATAACATATCATAAACAAGTCATAACGTAAACACTTCGTAGTCATATTATTCTCTAACTTATCATAGCCTTAACGTTCTCATACCTATCATAGACATATCATCACGTGAACGTACCTTAGTCATATCATCACAAGAACTTAACCTAACACTATTGTTCTATCAATCCTAACGCTATCGTTCTATCAATCTATCACAAACCTATTCCTTTATACCCGTAACCTAACCATATTCTTCCATCAATCTCTCTTATCCATATCACTCTGGTATGTAACCTAACCTTAACGTTTCATGAACGTATTTTACTCCTATCATTACATCTCGTTTTGTGCATTCTTCTTGTATCCTATCTCAAACATATCCTTGAACACATCGTACAGTAATTATTATCATACAATTCACATATCATAACGTATACATAACATATAGGAAGCATATTGATCCACAGACAATTCACACATATTGATAACATAAGGAACCACTACAAGGGGAGTAAGATTCGGATTACCTTGTAATCTCAAGGCAAAAACATTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGACCAAATATCTCAAGGCAACAACACTTGCTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAAAATTGCAAAGAAACTTAGTCATTGGCTAAAGAAGAGCACAAATGATTCTTGTACTATATTTTCCAAGTCTACTTACAAATACAACATAGATGGCTTTATATAGCCTCAAAATGAAGCTACTAAATGCATTCCAAGAGTTAGTAACATTCATATTTAATGGTCTTAATTAACCATTATGTAATTGTAACTTAAATAAATTAAAAGTCTTAAAATACATTAATGATATACAATAGCTCTAAATTACTCTAAATTGTAGTCCACCCAAAATTCAAAACATGAAACTTCATTTTTCTTCACATCTTCTTTGAAGCATATTGTATGATTGATGTCTCTTGGTTCATATCACATATCAATATATATGACACGTGCAGAACCACAGGGCATGTGTTAACATCAAATATAACCATGCCTATAGTAAAGTCACTTACCTGGCTAGCTTAAGTCGTTGTCACGAATACATCTTTAATGAAAGTTCGATTCCATCCTTTGAAAACCAAGTCAACCTATATAAGCCCATGACATTAGTTTCAGGTTTGAACTCTACCATATTATTTCTCTACTTTATTGGTACTTTATTGGTCCATTGTTAAAAGTCTTGAAATGTTATATATATATATATATATAAAATTATATTTTTATTAAAAATCTTATTTTTCATGGTTTGTGTTGTATAAGAAAGTAGACATAGCTATTTCAAGTTATTCTCGGCTTTACTAGTCTGTATTTACCTTTCCCTCTCTATTTAGTTTGCGGTTTTTAATTCCCTAGTCTTTTTTTTATCTGTTGCCTTTTAATTCTGTTCTCATGTATTCCAAATTTCTAGTGTATCCTATAGAAGTTTTCTTGTCATTCAATCCTTAATCTATTCATTTGACTACCAATAAAAATTTAATCCATTTCCAAATCTTTCCTTATCTCACTGTTTCCTATACATAAGTTTTCTTGGTCATTCTATCCTTAATCTATTCATTTGGCTACCAATAAAAATTTAATCTAATATTACTAATCTAACGTGATTTACTAGAATCGTATAAATGATTGATAATTAGTTTCTAACTCAAAACTAGACCATTGTAATAATTCAATGAAGATTTTACTATAATTGGTTGTGATTTCTAAAAAAGATAAAAGAAAATGAAGATTTAATATATATTGATAAGATCTCTTAACTGGGTAAGGGCGATTATTTTTTTTTTTTCCTCTAAGTAAATCTGACCATTATTGTTTTTCTTTTTCTTTTTGGAGTAACTGCTCATTTTCTAGCATAGGATGGGCTGAGTAAGGTAATTGTGGGAAGGATTAGAGGTTAGTGGAGAGAAGTTGAGAAATGTTTTTTTTTTTAATTTTTTAATTGTAATTAATTAATTAATTTATTATTATTATTATTTTAACTTTTTTTTTTTTTAATTTCTTTATTTATTTTTGGGCTATTACATTATATACCTCTCAAAGAAACTTTTGTACTCGAAAGTGTTTTAATCTTGGAATAACTCGGGTCGTTATTCTAAGAGTTCTTTGTCAAGTCTTCAAGTACCACTAAGTAAAAATTCTTAACAAGTATACCCTAATTCATATGAGTCATAAACATTTATTTGCATGCATAAAACTTTCATAAGCCTATCACTTTGTATTCCTAAAATCTTTGATTCCTTATAAGGTGTCTTCTCATATAGTTAGTATTTTAAATCTTAACTCATACTCCAAAAGAGTCTTTTTGGTCATTTACCCCCAAATCTTGGTTTAATTCTTCAACATATTCCAATGGCCTTGTAATTTTGTGTAATCCCTTTACACCGTGACATAAGACTCCTCATCAAATTTCATGTCAATTAGAGGTCACTTTGGTCATAAACTAGTGGTACGTAATTATAGGGGCATTTAGTCATTTTACACCTACACTTGGTTTAGCCCGTTATCATAACCTAATGGTCACCAAATTTTATACATAACCTTATCATGCCATATTGAATATTTTTCTAAAATTTCATGGACAACATAATTCATCTAAAGTTTGTGGCTCAGACACTTCATTGAAATAAATGTTGTACAATAAGGTTGGAAAACTCACATAGTTCCTCACTTTTTTTTTTTTTTTTTAAGTTTTATTTTTATTTTTTATACTATGATTCCATCTACTAGATCAATAGTTTTACTAGTATCTGATTTACATTATTCTCCAAATCAAATTCTCTACACTTAGCTAAAGGTTCACTAGATCTGTTTGTCCATACATCCTCAAAATCTCATTTTAAAATACGGGATCTCCACCTACACAAGAAAATTGTTGATAAAACTCCAAAATTGCACTTTCTTTTTTATCTAATTTTTTTTTCTCTCCTTATCATTAAAGAAAGACAGAAAAATTTCAGGGTAGAAACCTTCTCAAGAATTTCTCTTAAAATTTGA

mRNA sequence

ATGGTAAAAAATTCATTCAGCTCAGTTATTTCGCAAGAAGAAAAAAAAGAAAATGGAGGATCCGTTGAATTTCAAGTAGTCAGTTTCACCAATAAGATACGAAGACTTACTTCCCATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAGAGGTCTACCTACAAGAAAAGACCTCATGATAGTCAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTCGACTCATCCTTACTTTGGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGCAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACTGTAAATGGTCCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAATTGAGTCGTATAGCTTCTCATCTGTTATGGCTTGGCCCTTTTATGGCGGATATTGGCGCACAGACTCCCTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCAGCCACCGAAAGACAGAAAAATTTCAGGGTAGAAACCTTCTCAAGAATTTCTCTTAAAATTTGA

Coding sequence (CDS)

ATGGTAAAAAATTCATTCAGCTCAGTTATTTCGCAAGAAGAAAAAAAAGAAAATGGAGGATCCGTTGAATTTCAAGTAGTCAGTTTCACCAATAAGATACGAAGACTTACTTCCCATTTGGAATTGCACAAAAAAGACTATTTATCTCAAAGAGGTCTACCTACAAGAAAAGACCTCATGATAGTCAATATGGGACCTCACCACCCATCAATGCACGGTGTTCTTCGACTCATCCTTACTTTGGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACAGAGGGATGGAAAAAATTGCAGAAAACCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACTGTAAATGGTCCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAATTGAGTCGTATAGCTTCTCATCTGTTATGGCTTGGCCCTTTTATGGCGGATATTGGCGCACAGACTCCCTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCAGCCACCGAAAGACAGAAAAATTTCAGGGTAGAAACCTTCTCAAGAATTTCTCTTAAAATTTGA

Protein sequence

MVKNSFSSVISQEEKKENGGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATERQKNFRVETFSRISLKI
BLAST of CmaCh12G007320 vs. Swiss-Prot
Match: NDHH_CUCSA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus GN=ndhH PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-79
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPE LGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. Swiss-Prot
Match: NDHH_MANES (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta GN=ndhH PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.0e-79
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 1

Query: 55  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 114
           TRKDLMIVNMGPHHPSMHGVLRLI+TLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP
Sbjct: 6   TRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 65

Query: 115 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 174
           YVTRWDYLATMFTEAITVNGPELLGNIQVPKRA YIRVIMLELSRIASHLLWLGPFMADI
Sbjct: 66  YVTRWDYLATMFTEAITVNGPELLGNIQVPKRAGYIRVIMLELSRIASHLLWLGPFMADI 125

Query: 175 GAQTPFFYIFRERELVYDLFEAAT 199
           GAQTPFFYIFRERELVYDLFEAAT
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. Swiss-Prot
Match: NDHH_EUCGG (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhH PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.0e-79
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 1

Query: 55  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 114
           TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRT+IQYLP
Sbjct: 6   TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLP 65

Query: 115 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 174
           YVTRWDYLATMFTEAITVNGPE LGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI
Sbjct: 66  YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125

Query: 175 GAQTPFFYIFRERELVYDLFEAAT 199
           GAQTPFFYIFRERELVYDLFEAAT
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. Swiss-Prot
Match: NDHH_OENEH (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhH PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 8.4e-79
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 1

Query: 55  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 114
           TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRT+IQYLP
Sbjct: 6   TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLP 65

Query: 115 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 174
           YVTRWDYLATMFTEAIT+NGPE LGNIQVPKRASYIR+IMLELSRIASHLLWLGPFMADI
Sbjct: 66  YVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADI 125

Query: 175 GAQTPFFYIFRERELVYDLFEAAT 199
           GAQTPFFYIFRERELVYDLFEAAT
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. Swiss-Prot
Match: NDHH_OENAR (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera argillicola GN=ndhH PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 8.4e-79
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 1

Query: 55  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 114
           TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRT+IQYLP
Sbjct: 6   TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLP 65

Query: 115 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 174
           YVTRWDYLATMFTEAIT+NGPE LGNIQVPKRASYIR+IMLELSRIASHLLWLGPFMADI
Sbjct: 66  YVTRWDYLATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADI 125

Query: 175 GAQTPFFYIFRERELVYDLFEAAT 199
           GAQTPFFYIFRERELVYDLFEAAT
Sbjct: 126 GAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. TrEMBL
Match: M7ZI22_TRIUA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Triticum urartu GN=TRIUR3_02235 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.3e-89
Identity = 171/223 (76.68%), Postives = 180/223 (80.72%), Query Frame = 1

Query: 12  QEEKKENGGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGL------------------ 71
           +EEK+EN GSVEFQV SFTNKIRRL SHLELHKKD+ S+RGL                  
Sbjct: 56  KEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKN 115

Query: 72  ----------------PTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLH 131
                            TRKDLMIVNMGP HPSMHGVLRLI+TLDGEDVIDCEPILGYLH
Sbjct: 116 RVRYKKLIGRKDMSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLH 175

Query: 132 RGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLEL 191
           RGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVN PE L NIQ+P+RASYIRVIMLEL
Sbjct: 176 RGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLEL 235

Query: 192 SRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATER 201
           SRIASHLLWLGPFMAD+GAQTPFFYIFREREL+YDLFEAATER
Sbjct: 236 SRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATER 278

BLAST of CmaCh12G007320 vs. TrEMBL
Match: A0A0S2IES7_9ROSI (NADH-quinone oxidoreductase subunit D OS=Cucurbita ecuadorensis GN=ndhH PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.8e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. TrEMBL
Match: A0A0S2IFG8_9ROSI (NADH-quinone oxidoreductase subunit D OS=Cucurbita okeechobeensis GN=ndhH PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.8e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. TrEMBL
Match: A0A0S2IE70_9ROSI (NADH-quinone oxidoreductase subunit D OS=Cucurbita argyrosperma subsp. sororia GN=ndhH PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.8e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. TrEMBL
Match: A0A0S2IEV6_9ROSI (NADH-quinone oxidoreductase subunit D OS=Cucurbita ficifolia GN=ndhH PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.8e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. TAIR10
Match: ATCG01110.1 (ATCG01110.1 NAD(P)H dehydrogenase subunit H)

HSP 1 Score: 288.1 bits (736), Expect = 4.5e-78
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 1

Query: 55  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLP 114
           T KDLMIVNMGPHHPSMHGVLRLI+TLDGEDV+DCEPILGYLHRGMEKIAENR IIQYLP
Sbjct: 6   TGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLP 65

Query: 115 YVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 174
           YVTRWDYLATMFTEAITVNGPE LGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI
Sbjct: 66  YVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADI 125

Query: 175 GAQTPFFYIFRERELVYDLFEAAT 199
           GAQTPFFYIFRERE VYDLFEAAT
Sbjct: 126 GAQTPFFYIFREREFVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. TAIR10
Match: ATMG00510.1 (ATMG00510.1 NADH dehydrogenase subunit 7)

HSP 1 Score: 124.4 bits (311), Expect = 8.5e-29
Identity = 62/133 (46.62%), Postives = 84/133 (63.16%), Query Frame = 1

Query: 63  NMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYL 122
           N GP HP+ HGV RL+L ++GE V   EP +G LHRG EK+ E +T +Q LPY  R DY+
Sbjct: 14  NFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYV 73

Query: 123 ATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFY 182
           + M  E    +  E L N +VP RA YIRV+  E++RI++H L L     D+GA TPF +
Sbjct: 74  SMMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLW 133

Query: 183 IFRERELVYDLFE 196
            F ERE + + +E
Sbjct: 134 AFEEREKLLEFYE 146

BLAST of CmaCh12G007320 vs. TAIR10
Match: ATCG01120.1 (ATCG01120.1 chloroplast ribosomal protein S15)

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-14
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1

Query: 1  MVKNSFSSVISQEEKKENGGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGL 54
          M+KN   S   +E+K+E+ GSVEFQV SFTNKIRRLTSHLELH+KDYLSQRGL
Sbjct: 1  MIKNIVISF--EEQKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGL 51

BLAST of CmaCh12G007320 vs. NCBI nr
Match: gi|474239245|gb|EMS59732.1| (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Triticum urartu])

HSP 1 Score: 335.1 bits (858), Expect = 9.0e-89
Identity = 171/223 (76.68%), Postives = 180/223 (80.72%), Query Frame = 1

Query: 12  QEEKKENGGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGL------------------ 71
           +EEK+EN GSVEFQV SFTNKIRRL SHLELHKKD+ S+RGL                  
Sbjct: 56  KEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKN 115

Query: 72  ----------------PTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLH 131
                            TRKDLMIVNMGP HPSMHGVLRLI+TLDGEDVIDCEPILGYLH
Sbjct: 116 RVRYKKLIGRKDMSLPLTRKDLMIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLH 175

Query: 132 RGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLEL 191
           RGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVN PE L NIQ+P+RASYIRVIMLEL
Sbjct: 176 RGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLENIQIPQRASYIRVIMLEL 235

Query: 192 SRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATER 201
           SRIASHLLWLGPFMAD+GAQTPFFYIFREREL+YDLFEAATER
Sbjct: 236 SRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATER 278

BLAST of CmaCh12G007320 vs. NCBI nr
Match: gi|952954541|gb|ALO21902.1| (NdhH (plastid) [Cucurbita cordata])

HSP 1 Score: 299.3 bits (765), Expect = 5.5e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. NCBI nr
Match: gi|952954760|gb|ALO22118.1| (NdhH (plastid) [Cucurbita ficifolia])

HSP 1 Score: 299.3 bits (765), Expect = 5.5e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. NCBI nr
Match: gi|952954402|gb|ALO21766.1| (NdhH (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 299.3 bits (765), Expect = 5.5e-78
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ
Sbjct: 3   GPATRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

BLAST of CmaCh12G007320 vs. NCBI nr
Match: gi|545719483|ref|YP_008578144.1| (NADH dehydrogenase subunit 7 (chloroplast) [Allosyncarpia ternata])

HSP 1 Score: 297.4 bits (760), Expect = 2.1e-77
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 1

Query: 52  GLPTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 111
           G  TRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRT+IQ
Sbjct: 3   GTTTRKDLMIVNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQ 62

Query: 112 YLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 171
           YLPYVTRWDYLATMFTEAITVNGPE LGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM
Sbjct: 63  YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFM 122

Query: 172 ADIGAQTPFFYIFRERELVYDLFEAAT 199
           ADIGAQTPFFYIFRERELVYDLFEAAT
Sbjct: 123 ADIGAQTPFFYIFRERELVYDLFEAAT 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NDHH_CUCSA1.7e-7997.96NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus GN=nd... [more]
NDHH_MANES5.0e-7998.61NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta GN=... [more]
NDHH_EUCGG5.0e-7998.61NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus s... [more]
NDHH_OENEH8.4e-7997.22NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera elata subsp... [more]
NDHH_OENAR8.4e-7997.22NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Oenothera argillicola... [more]
Match NameE-valueIdentityDescription
M7ZI22_TRIUA6.3e-8976.68NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Triticum urartu GN=TR... [more]
A0A0S2IES7_9ROSI3.8e-7898.64NADH-quinone oxidoreductase subunit D OS=Cucurbita ecuadorensis GN=ndhH PE=3 SV=... [more]
A0A0S2IFG8_9ROSI3.8e-7898.64NADH-quinone oxidoreductase subunit D OS=Cucurbita okeechobeensis GN=ndhH PE=3 S... [more]
A0A0S2IE70_9ROSI3.8e-7898.64NADH-quinone oxidoreductase subunit D OS=Cucurbita argyrosperma subsp. sororia G... [more]
A0A0S2IEV6_9ROSI3.8e-7898.64NADH-quinone oxidoreductase subunit D OS=Cucurbita ficifolia GN=ndhH PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG01110.14.5e-7895.83ATCG01110.1 NAD(P)H dehydrogenase subunit H[more]
ATMG00510.18.5e-2946.62ATMG00510.1 NADH dehydrogenase subunit 7[more]
ATCG01120.17.7e-1473.58ATCG01120.1 chloroplast ribosomal protein S15[more]
Match NameE-valueIdentityDescription
gi|474239245|gb|EMS59732.1|9.0e-8976.68NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Triticum urartu][more]
gi|952954541|gb|ALO21902.1|5.5e-7898.64NdhH (plastid) [Cucurbita cordata][more]
gi|952954760|gb|ALO22118.1|5.5e-7898.64NdhH (plastid) [Cucurbita ficifolia][more]
gi|952954402|gb|ALO21766.1|5.5e-7898.64NdhH (plastid) [Cucurbita argyrosperma][more]
gi|545719483|ref|YP_008578144.1|2.1e-7797.28NADH dehydrogenase subunit 7 (chloroplast) [Allosyncarpia ternata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000589Ribosomal_S15
IPR001135NADH_Q_OxRdtase_suD
IPR009068S15_NS1_RNA-bd
IPR014029NADH_UbQ_OxRdtase_49kDa_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0016651oxidoreductase activity, acting on NAD(P)H
GO:0048038quinone binding
GO:0051287NAD binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0055114oxidation-reduction process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006810 transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0051287 NAD binding
molecular_function GO:0050136 NADH dehydrogenase (quinone) activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G007320.1CmaCh12G007320.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 14..53
score: 1.
IPR000589Ribosomal protein S15SMARTSM01387Ribosomal_S15_2coord: 11..62
score: 5.
IPR001135NADH-quinone oxidoreductase, subunit DPFAMPF00346Complex1_49kDacoord: 173..198
score: 1.
IPR009068S15/NS1, RNA-bindingGENE3DG3DSA:1.10.287.10coord: 13..53
score: 2.6
IPR009068S15/NS1, RNA-bindingunknownSSF47060S15/NS1 RNA-binding domaincoord: 15..54
score: 1.15
IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved sitePROSITEPS00535COMPLEX1_49Kcoord: 96..107
scor
NoneNo IPR availablePRODOMPD157043coord: 9..53
score: 5.0
NoneNo IPR availablePANTHERPTHR11993NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNITcoord: 5..198
score: 5.7E
NoneNo IPR availablePANTHERPTHR11993:SF27NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTICcoord: 5..198
score: 5.7E

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G007320CmaCh00G000460Cucurbita maxima (Rimu)cmacmaB006