CmaCh00G000460 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh00G000460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	Cma_Chr00 : 2843422 .. 2844509 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGTGAAGATGTTATTGACTCTGAACCAATATTGGGTTATTTACAAAGAGGGATGAAAAAAATTGCAGAAAATCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGGTCCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAATTGAGTCATATAGCTTCTCATCTACTATGGCTTGGCCCTTTTATGGCGGATATTGGCACACAGACTCCCTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCAGCCACCGGTATGAGAATGATGCATAATTATTTTCATATCGGGGGAGTCGCGGCTGTTCTACCTCATGGATGGATAGATAAATATTTAGATTTCTGCGATTATTTTTTGACAGCGGTTGCTGAATATCAAAAACTTATTACACAAAATCCTATTTTTTTAGAACTAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGTAATAAATTGGGGGTTATCAGGACCAATGCTACGAGCTTTCGGAATAACATGGGATCTTCGTAAAGTTGATCATTATGAGTGTTATGACGAATTTGATTGGGAAGTTTAGTGGCAAAAAGAAGGAGATTCATTAGCTCGTTATTTAGTCACACTTGGTGAGATGATGGAATCCATAAAAATTATTCAACAAGCTTTGGAAGGAATTCCAAGGGGACTTTATGAAAATTTAGAAATACGATCTTTTGATCGAGGACACTCCGGAATGGAATGATTTTGACTATCGATTCATTAGTAAAATAACCTTCGCCAACTTTTGAATTGGCGAAACAAGAACTTTATGTGATAGTCGAAGCCCCAAAAGGGGAATTGGGCATTTTTTTGATAGGGGATCAGGGTGGTTTTCCTTGGAGATGGAGAATTCGCCCGCCATGTTTTATCAATTTGCAAATTCTTCCGCAGTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGCATAAATATCATTATGGGAGAAGTTGATCGTTAA

mRNA sequence

ATGGATGGTGAAGATGTTATTGACTCTGAACCAATATTGGGTTATTTACAAAGAGGGATGAAAAAAATTGCAGAAAATCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGGTCCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAATTGAGTCATATAGCTTCTCATCTACTATGGCTTGGCCCTTTTATGGCGGATATTGGCACACAGACTCCCTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCAGCCACCGAACTAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGGGATCAGGGTGGTTTTCCTTGGAGATGGAGAATTCGCCCGCCATTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGCATAAATATCATTATGGGAGAAGTTGATCGTTAA

Coding sequence (CDS)

ATGGATGGTGAAGATGTTATTGACTCTGAACCAATATTGGGTTATTTACAAAGAGGGATGAAAAAAATTGCAGAAAATCGAACAATTATACAATATCTACCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACGGTAAATGGTCCAGAACTGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAGTAATTATGTTGGAATTGAGTCATATAGCTTCTCATCTACTATGGCTTGGCCCTTTTATGGCGGATATTGGCACACAGACTCCCTTCTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCAGCCACCGAACTAGTTGAGGGAGTAGGCATTATTTCTGGAGAAGAGGGGATCAGGGTGGTTTTCCTTGGAGATGGAGAATTCGCCCGCCATTTAGTTAAAAGAATGAAATTGGCTGATATTATGACAATACTAGGTAGCATAAATATCATTATGGGAGAAGTTGATCGTTAA

Protein sequence

MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGNIQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATELVEGVGIISGEEGIRVVFLGDGEFARHLVKRMKLADIMTILGSINIIMGEVDR

Homology

[Close]

BLAST of CmaCh00G000460 vs. Swiss-Prot
Match: NDHH_MANES (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta GN=ndhH PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.0e-59
Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRA YIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRAGYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. Swiss-Prot
Match: NDHH_CARPA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya GN=ndhH PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-59
Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. Swiss-Prot
Match: NDHH_CUCSA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus GN=ndhH PE=3 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-59
Identity = 111/118 (94.07%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. Swiss-Prot
Match: NDHH_EUCGG (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhH PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.5e-59
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRT+IQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. Swiss-Prot
Match: NDHH_SOYBN (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Glycine max GN=ndhH PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.5e-59
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFREREL+YDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. TrEMBL
Match: W1NR53_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00456p00012010 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATEL 120
           IQVPKRASYIR IMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAATE 
Sbjct: 92  IQVPKRASYIRAIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATER 151

Query: 121 VEGVGIISGEEGI 134
           VEGVGII  E+ I
Sbjct: 152 VEGVGIIGREDVI 164

[Close]

BLAST of CmaCh00G000460 vs. TrEMBL
Match: A0A072V7B6_MEDTR (NAD(P)H-quinone oxidoreductase subunit H OS=Medicago truncatula GN=MTR_2g451380 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATEL 120
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFREREL+YDLFEAAT  
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATVR 151

Query: 121 VEGVGIISGEEGI 134
           VEGVG++  EE I
Sbjct: 152 VEGVGVVGREEVI 164

[Close]

BLAST of CmaCh00G000460 vs. TrEMBL
Match: M7ZI22_TRIUA (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Triticum urartu GN=TRIUR3_02235 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-61
Identity = 116/133 (87.22%), Postives = 123/133 (92.48%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVN PE L N
Sbjct: 159 LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLEN 218

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATEL 120
           IQ+P+RASYIRVIMLELS IASHLLWLGPFMAD+G QTPFFYIFREREL+YDLFEAATE 
Sbjct: 219 IQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATER 278

Query: 121 VEGVGIISGEEGI 134
           VEGVG ISGEE +
Sbjct: 279 VEGVGFISGEEAV 291

[Close]

BLAST of CmaCh00G000460 vs. TrEMBL
Match: A0A0Y0U489_9ROSI (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Croton texensis GN=ndhH PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.8e-58
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. TrEMBL
Match: A0A0S2IE78_9ROSI (NADH-quinone oxidoreductase subunit D OS=Cucurbita cordata GN=ndhH PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.8e-58
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. TAIR10
Match: ATCG01110.1 (ATCG01110.1 NAD(P)H dehydrogenase subunit H)

HSP 1 Score: 225.3 bits (573), Expect = 2.8e-59
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDV+D EPILGYL RGM+KIAENR IIQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERE VYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFREREFVYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. TAIR10
Match: ATMG00510.1 (ATMG00510.1 NADH dehydrogenase subunit 7)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-19
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           M+GE V  +EP +G L RG +K+ E +T +Q LPY  R DY++ M  E    +  E L N
Sbjct: 32  MNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVSMMAQEHAHSSAVEKLLN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFE 116
            +VP RA YIRV+  E++ I++H L L     D+G  TPF + F ERE + + +E
Sbjct: 92  CEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWAFEEREKLLEFYE 146

[Close]

BLAST of CmaCh00G000460 vs. NCBI nr
Match: gi|548835836|gb|ERM97465.1| (hypothetical protein AMTR_s00456p00012010 [Amborella trichopoda])

HSP 1 Score: 245.7 bits (626), Expect = 5.7e-62
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATEL 120
           IQVPKRASYIR IMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAATE 
Sbjct: 92  IQVPKRASYIRAIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAATER 151

Query: 121 VEGVGIISGEEGI 134
           VEGVGII  E+ I
Sbjct: 152 VEGVGIIGREDVI 164

[Close]

BLAST of CmaCh00G000460 vs. NCBI nr
Match: gi|922390932|ref|XP_013463884.1| (NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula])

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-61
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPE LGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPEQLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATEL 120
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFREREL+YDLFEAAT  
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATVR 151

Query: 121 VEGVGIISGEEGI 134
           VEGVG++  EE I
Sbjct: 152 VEGVGVVGREEVI 164

[Close]

BLAST of CmaCh00G000460 vs. NCBI nr
Match: gi|474239245|gb|EMS59732.1| (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Triticum urartu])

HSP 1 Score: 242.3 bits (617), Expect = 6.3e-61
Identity = 116/133 (87.22%), Postives = 123/133 (92.48%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVN PE L N
Sbjct: 159 LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEFLEN 218

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAATEL 120
           IQ+P+RASYIRVIMLELS IASHLLWLGPFMAD+G QTPFFYIFREREL+YDLFEAATE 
Sbjct: 219 IQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFFYIFRERELIYDLFEAATER 278

Query: 121 VEGVGIISGEEGI 134
           VEGVG ISGEE +
Sbjct: 279 VEGVGFISGEEAV 291

[Close]

BLAST of CmaCh00G000460 vs. NCBI nr
Match: gi|984911352|gb|AMC31113.1| (NADH dehydrogenase subunit 7 (chloroplast) [Euphorbia esula])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRA YIRVIMLELS IASHLLWLGPFMADIGTQTPFFYIFREREL+YDLFEAAT
Sbjct: 92  IQVPKRAGYIRVIMLELSRIASHLLWLGPFMADIGTQTPFFYIFRERELIYDLFEAAT 149

[Close]

BLAST of CmaCh00G000460 vs. NCBI nr
Match: gi|952954402|gb|ALO21766.1| (NdhH (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MDGEDVIDSEPILGYLQRGMKKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 60
           +DGEDVID EPILGYL RGM+KIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN
Sbjct: 32  LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNGPELLGN 91

Query: 61  IQVPKRASYIRVIMLELSHIASHLLWLGPFMADIGTQTPFFYIFRERELVYDLFEAAT 119
           IQVPKRASYIRVIMLELS IASHLLWLGPFMADIG QTPFFYIFRERELVYDLFEAAT
Sbjct: 92  IQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELVYDLFEAAT 149

The following BLAST results are available for this feature:

BLAST of CmaCh00G000460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDHH_MANES	2.0e-59	94.07	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta GN=...	[more]
NDHH_CARPA	3.5e-59	94.07	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Carica papaya GN=ndhH...	[more]
NDHH_CUCSA	3.5e-59	94.07	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus GN=nd...	[more]
NDHH_EUCGG	4.5e-59	93.22	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Eucalyptus globulus s...	[more]
NDHH_SOYBN	4.5e-59	93.22	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Glycine max GN=ndhH P...	[more]

BLAST of CmaCh00G000460 vs. TrEMBL


Match Name	E-value	Identity	Description
W1NR53_AMBTC	4.0e-62	90.98	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00456p00012010 PE=4 SV=...	[more]
A0A072V7B6_MEDTR	4.4e-61	88.72	NAD(P)H-quinone oxidoreductase subunit H OS=Medicago truncatula GN=MTR_2g451380 ...	[more]
M7ZI22_TRIUA	4.4e-61	87.22	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Triticum urartu GN=TR...	[more]
A0A0Y0U489_9ROSI	7.8e-58	94.92	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Croton texensis GN=nd...	[more]
A0A0S2IE78_9ROSI	7.8e-58	94.92	NADH-quinone oxidoreductase subunit D OS=Cucurbita cordata GN=ndhH PE=3 SV=1	[more]

BLAST of CmaCh00G000460 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG01110.1	2.8e-59	91.53	ATCG01110.1 NAD(P)H dehydrogenase subunit H	[more]
ATMG00510.1	3.7e-19	41.74	ATMG00510.1 NADH dehydrogenase subunit 7	[more]

BLAST of CmaCh00G000460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|548835836\|gb\|ERM97465.1\|	5.7e-62	90.98	hypothetical protein AMTR_s00456p00012010 [Amborella trichopoda]	[more]
gi\|922390932\|ref\|XP_013463884.1\|	6.3e-61	88.72	NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]	[more]
gi\|474239245\|gb\|EMS59732.1\|	6.3e-61	87.22	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [Triticum urartu]	[more]
gi\|984911352\|gb\|AMC31113.1\|	1.1e-57	94.07	NADH dehydrogenase subunit 7 (chloroplast) [Euphorbia esula]	[more]
gi\|952954402\|gb\|ALO21766.1\|	1.1e-57	94.92	NdhH (plastid) [Cucurbita argyrosperma]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001135	NADH_Q_OxRdtase_suD

Vocabulary: **Molecular Function**
Term	Definition
GO:0016651	oxidoreductase activity, acting on NAD(P)H
GO:0048038	quinone binding
GO:0051287	NAD binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006810	transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0050136	NADH dehydrogenase (quinone) activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000460.1	CmaCh00G000460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 145..172 score: 5.
None	No IPR available	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 1..118 score: 2.2
None	No IPR available	PANTHER	PTHR11993:SF27	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 1..118 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh00G000460	CmaCh12G007320	Cucurbita maxima (Rimu)	cmacmaB006

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh00G000460	Cucurbita maxima (Rimu)	cmacmaB002
CmaCh00G000460	Cucurbita maxima (Rimu)	cmacmaB005