CmaCh12G006250 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G006250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionExonuclease 3'-5' domain-containing 1
LocationCma_Chr12 : 3305456 .. 3311917 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGAAGTTGGAATTGGAGGTGATTAAAAGCAAGAAATACGAAGAGAAAATCGAATGATTCGCTCAAATGGCGAACACTCCTCCTCCTCACCAGACGTATATTCCTCTGCCTTCCGACTCAGGTCACTCTCTCTTTCCCCTTTCTCGTCTTCTTTCAGATTGGACTTCCATTTTCATTTACGATCAATTTTGTTTTGGCTTTGATCTGTTGTTGAATGCGTGCTTATTGCAAGTTTGTTGGTCTATGGATTGACGTGCGATTCTTCCTAGAACATCGTTGTCTCTCTTATCGAAGCTTAATTACTGTTTGTTTAGCCAATGAGAATTCGAGGATTGAACTTAACTGATGTTGGAAACTAAATTTTTGATGCAATGGAATCACAATGATGTAATTATCCATGGTTAGAGTAGAAGAATTTGTTTCGAAATTTTCCAGGTCGCTCTTAGTGTATATGCTAGTATTTTCTTTGTTTTCATATTTCCTTCGACATTCTACGTCACTTCGTTTTAATTTCACTTGCTGCGGATAGGTTGTGGTTTTCTTGATTGCTTTACCCGCGAATGGTTTCTGGATTGCTTTTTCCTTCCATAGTTCTTGATTGCGTCACCGGCGTGTGTTCCATAAATTTTTTTAGTTATTATCTTCGTTTTAAGATTTTGCACACTGTTTGATTTAAAATGGAACTGGAGAGTTTAATTCTACCCCTCGTTCCCCTGCTCCTGCCCTTCGTATGATCATTTCGCTCGAATGTTTGTGTTATCTTCCAATGAGTTTCATTTTCTGTGGATGCCAGGCGAAAATCAGACTGATCCGGAAGCCAACGCAACCTTGGTTCCTATTCATATTGTTACTCATGCATCTCAACTCCCTAAAGAATTTGTTGACCCATCGCCTAGAAAGCATCTAGTAGTTGGCTTTGATTGTGAAGGTGTTGACCTATGTCGCCATGGAAACCTCTGTATAATGCAGGTACATAAAATGCTAAGAACAAATCACTGTTTTACCATCCTTGTGTAGAGTATGCAATTATATGGTAGAGGCGTGTGTTAGCTAACCTTCCCAACTGAGGAAGTCAATGGTTCTAACTTGTAATTTCATTGTTCTATTCATCTTGTGATATTGTCAATTCATAGTCCCTTGCTTCAGTCTTCCAAGAGAACGGCTCTTGTTATAGATAAAGCAATGAGATACCTGGATAGACCCCCATTTGTTGCTCAATAGTAGTTCATCCTTCAAATTACAGAGTCTGGGGTTGCCTGCTGTCATATGCATTGGCATTCAAGAATATCCAGTCTCTGCTCTATTAATAAAAAAACACTGGATATAATTAGTGCATATTAAGTTTTTATGTGTGTTCTTTTATTGGCAGATTGCATTTCCCGATGCTGTGTATCTGGTTGATGCTGTTCAGGGAGGAGAGGAACTTGTGAAAGTCTGTAAGCCTGCTCTTGAGTCCGAATATGTCACAAAAGTTATACATGATTGTAAACGAGACAGCGAGGTCTCTCTCAGACTTTGTTTCCATCTCAGATTGCCTTCACAGTAACATGACATGTTTTAGCTAATATTTGCCCCTTTTTTCCCTGTAGGCATTGTACTTTCAGTTTGGAATCAAGTTGAATAACGTTATTGATACTCAGGTGATTATCAATTGTGAGAAGCCTGAAACTGATTTAAACAATATGATTATCAATTGGTTTAAGGCTGAAAATATGCATGTCCTCAAAATGAAAAGGAGAGTGGTTATCTTGTGACTTTTCAAATGTCAATAAAGAGTTTGTTTTTCTTGATTAAAAAATGAGATTTAAACAATTTCTCTTAGGTTTGATCTAGTAATTACCTTGAAGTTAAATGTTTGTATTGAGCTGCAATATGGAGGAAGGCTTTAGATCTTCCTGCTTTAATTTTCAACTGCATTACTTGATTCAGATTGCATATTCACTTATAGAGGAGCAAGAGGGACGGACCAAGTTACCTGATAACTATATCTCCTTTGTTAGTCTTCTTGCAGATTCACGTTATTGTGGTATTATATTTAAATCCTGGTACCTATTAGCACTTATCCATTTTTTTATCATGGAAATTTATGCATTTTATTTTCTAAATCCTTTGAATAAAATGACCTATACTCACTCAAGTATTAACTGATAATTGCTTATTAAACTTCCAAAGCAGAAAAGCTAGATTTATTGCTTGCCATCTTCATGTTAAGACAACTCCTTACTTGCTATTTATTATGATTTTGGTGTTGCCATGAGCTACATGGTTGGGGATAGATAATTAGCCAAAAGAATCTCCTGAAAGAAAAAAAAAAAAAAAAAAAAAATAGTAGAAACTGGAATTTGGAAACTATTACATTGTCTTAACCCCTAGCTGAGAACATTGTCTCTGTGTGACACTCCCATTGATCTGAAGGATGACTATTGCATTAATGACACTTCTGTGCTCACTTTTTGTTTGATATTCAATAGCATCAAAATCCATTAATACAAAAATTATATTATGATATATCAGTGTCCATAATCTCTTTAAAGATTATAGAAAAGGATGGAGATTTTAGAGAACAATTTACTGGAAGGTGTGGCGGAGGGTTAAGAATCGCATGTGGTTAATTAAGGTAGAGTCTCTAAGCCAAATTAGCCTACCTTGTGGGTGAACTTGGAGTTCGGAACTTATTTTTAGGATTTGGAGGTTTCCCATAAAAACATCTCTCTTCAGTATGCTATAATCACATCGACATTGGTAAAGAACATGGCTTTAATTGGACAGAGAGTTTCATGCCAATTCTCACCTCTTTTCCTCTAAAATTATCGAGCTCTTTCTTTCATGGACCAAGTATAAGCTTGAGAGGTGTGATTAAATTATATTTGGGAAGGTTATGTGGGTTGTTGCAATTCTGGTAAAATAGGAAATTAGAATGACCAAACTAGGAGCCTGATTTTAGAGTCTAAAGCCATCTTTCATTGATCGTGCACACTTAATTTGCACTTGGCTCATTCTTTGCAAGCATGAGGTTAAGTAAAGTAGAACCAGAAGTTTCACTCTCATGAGATTCTGTTAGAGAGTTGTATTTCATGCATCTCCATTCAAAAATGTTGAAGTTCATGCGCTGATTTTTGTGGGACATCCTTTCAATCGCTCCTCTCTTTTTGGGTCTCTCTGGCATGAAAGGAACAAACAGATCTTCAACAACAATTGTGGCTCTCTTGAGAGTTTCTTTGATTTAATATTTTTGAATGGTTTAATGTTCATACCCCTTTAAAGACTATAGTCCTTCTACTTTACTAAAAAATTGGAAATCTTTCTTGTAGTCCACCTTGGTGGGCTCATCTATCTATGAAATCTCTTGTTCCCCTCTCAAAGAAAATAATAATAATAATAAAGCCTGTATATTTTTCTTTCGTCTCATGTGCCGGTGTGCTTTCAGGGTAAAAGTGCATAATGAGTGGTTATTTACTTGGCGACCTTATCAAAGGTGTACACGAATGACGGGATTAAAAGAGGAATGACTGTTTGCAATTGTAAATTTGCAACCTCAAAGATATATTATTGTCAGATGATAGATCCCCTTTGCATTCATTGCAATTAGAGCTGCTTGTGGCATTGAAGACTTTGTAGTTCAGATCGTAAGTGTATAGTTTTGAAACTGCCGAGAGTTAATACTTTTTGGAGAAAAAGGCGAAGGCCATTTTTCTGAATAGAAGGATAGGAACAAACTTGAAGATAGTTCTGGAGTTGGAAGAGCTCGGAGGACCTAATTTTTTGTTTTTTTTGTAGTCCTTTCCAGTACACCAAATAAAATAGACTTTGTGTTTGATGTTATCCTTTTCTGGGAAATTGTAAAGTTTTATTGTCCAATCTCCGATCTACTTTTTGATTTACTGAATTATCAGAAACTTTGAAAGGTATAATCCAGAATCTATGTCAAGTTCTCATGATCAGTGGAGAAATTGATAAGCTTTTGTTATATGAAATGCATTTACTTAGACTAACCAATATCAGAAACTTTTAAAACCCAAGTACTTTGTGCTGCTAATGCTTACATTTTTATTCTGTCTTACCAATATGCAATCGTCACTCTTAATGTAGGTGTATCATATCAGGAGAAGGAAGAGGTTCGCCTCCTACTTAGGCAGGTTAGTTTGGTCATTGCTGTATTGCTGTGTAGAATTTTGAATCCTAGCAAGAAGTTCTATGGTTCTATAAATTTTGCATTGTTTTCCGTTATGTGGTGCTTTATAGGTCAAATGTGCTTAATTCCTAAATGTAATATCCTTCTTTTGGAGTAGCACAAGTATAATAGACATTTCAGGTCTTTAGACGACGAAAATGACTTGGAAATTAAGATTATTAATATACAGGTATAATATTATGATGACCATAATATTAACATTGTGCTTAGAATGAGACTATATATGATTTTAGAATTATTATTCAGAAATAACAAATTTGTAGTCAATTATTATTTTATGGAATATTATAAACAATTGTCTTCTTTTATGGATTATTAATATACTGGTCTTTTTTTTTTTTCTTTTTTGTTGGCATTATTATTATTATTTTATGGAATATTATAAACAATTGTCAATTATTTTCAGCACGTTTTTTAATACATAAAATTTAGTGCATATTAAAAAATAAAAATTGCAGGACCCTTATGAAAATGCTATACATCCACTTGGCCATCATAAATTGCAGGAACCTATATCTAGGATAATGTTATACGTGTGTACGTTGCCATTAAAAACAGAAAACTTGCTGTCAGATTTTTGGCATAACTACACAAACGAAATTCCCTAAAATGCTTTTAAAATTAAAGTAGTTTCTATACATGACATTTCAGGAAATTGGAGATCCATTGTTCCACAAGTTTATACCTATCTTTGCATAAAACCTTAATTCTAAATTTATATTTTACAGGACCCTCTGTTTTGGACATATAGACCATTGTCTGAATTGATGGTCCGTGCAGCTGCTGATGATGTACGCTTTCTTCTTTACATCTACCACAAGATGATGGAGAAATTGAATCAACAATCGCTGTGGTACCTTGCAGTGCGTGGTGCTTTGTACTGTCGGTGTTTTTGCATCAGTGATAATGAATATACTGACTGGCCTCCTCTCCCTTCTGTTCCAGGTTTTCTTTTAGAACACATCTTACCATGCATAGTCTATATAATGAGAATCATGGAAAATTGAACCTTCTGGTATGTCAAGTTGATTTTAACCGTCATTGCAAACTTTTCAACTTGTACAGTTTTTTAATCCGTTTCATCATATTAATTTTCTATATGATGTTTCAATATTGTCTGCCTTCTGTTATGTTATGATTTCACAATTGATATTGGGTTCAAAATTTAAAAAACGTATTTAGCAATGTGGGAAATGTTGCTCATCATTTTTCGTTCAACTATCTAGAATTCAATAATCGAATCTGCTGATCATCAAATATGTTCAAATTTGTAAATATTGGGTTAAACTACAAATGTGGTCTCTTTGAGAGAGTTAGAATTTAGTCCCTATGGCTTTAAATGTTAGAATTTGTTTGGGCCAGGTTTTAGTTGCATCAAATGAAAAGTAGTCTATGAACCTTACCGTCGAAACCCAAAGAATATGTTTAAATAGGAGTTAGAAATTTGTAAAATATTTAGGTTAGCTTATAAATTTAGTCTACATATAGAACTTAGTCCTTGTGATTTTAAAAGTTGGAATTTCATCCCTCATAGTATCCCTCATAGTTTTATAAAACTTTCATAAATATTGGTCTAACATGGTGTCAATTGGTTATTTATATTGGTTTAACATGTTCTTGCAGATAACCTTGTAGTAGAGGGCAATGCTCCTGAAGAAGAAATTCTTTCAGTCTTAGATGTTCCCTCTGGAATGATGGGACGCGTAATTGGTAGGAGAGGATCCTCAATTTTGTCAATAAAGGAATCCTGCAAGTAATTCTTTATAGACAAAATCTCTTCAACTTCATTTATATCCTTCACGCTCAAAAATATCATATCTCTTGTTTCTCACCTTTGATTCATCAAATGCAGTGCGGAAATTCTCATTGGCGGCGCTAAGGGCCCACCGGACAAGGTTAGTATCTCTTCTCATTCACCTCAACAAACCACTGTAAAGCCTTTAACTTGATACTATTTAAACTTTCATGGTATGCTCCTGTATTCTTCTCCATTTGCTTCAACCCCACGCTAGACTAGAACTCAAAAGACTCTTTTCGAGCACTTCGTTAAAAACCCCAGAAACAAACAGGAACACTATATGCTTGCCTCGATGTTTCGAGTATCAGCCAAAAAGCTGTTGAATGTTTATGTATATTAAAACTTTTTCTGCCAGTAAGGAAGTAGAATTGTTGAATGTAATTGTGGTGATGTGTAGGTATTCATCATCGGATCGGTGAGGCAGGTGAGGAAGGCAGAAGCGATGCTAAGAGGAAGGATGCTTGAAATATGA

mRNA sequence

CCGAAGTTGGAATTGGAGGTGATTAAAAGCAAGAAATACGAAGAGAAAATCGAATGATTCGCTCAAATGGCGAACACTCCTCCTCCTCACCAGACGTATATTCCTCTGCCTTCCGACTCAGGCGAAAATCAGACTGATCCGGAAGCCAACGCAACCTTGGTTCCTATTCATATTGTTACTCATGCATCTCAACTCCCTAAAGAATTTGTTGACCCATCGCCTAGAAAGCATCTAGTAGTTGGCTTTGATTGTGAAGGTGTTGACCTATGTCGCCATGGAAACCTCTGTATAATGCAGATTGCATTTCCCGATGCTGTGTATCTGGTTGATGCTGTTCAGGGAGGAGAGGAACTTGTGAAAGTCTGTAAGCCTGCTCTTGAGTCCGAATATGTCACAAAAGTTATACATGATTGTAAACGAGACAGCGAGGCATTGTACTTTCAGTTTGGAATCAAGTTGAATAACGTTATTGATACTCAGATTGCATATTCACTTATAGAGGAGCAAGAGGGACGGACCAAGTTACCTGATAACTATATCTCCTTTGTTAGTCTTCTTGCAGATTCACGTTATTGTGGTGTATCATATCAGGAGAAGGAAGAGGTTCGCCTCCTACTTAGGCAGGACCCTCTGTTTTGGACATATAGACCATTGTCTGAATTGATGGTCCGTGCAGCTGCTGATGATGTACGCTTTCTTCTTTACATCTACCACAAGATGATGGAGAAATTGAATCAACAATCGCTGTGGTACCTTGCAGTGCGTGGTGCTTTGTACTGTCGGTGTTTTTGCATCAGTGATAATGAATATACTGACTGGCCTCCTCTCCCTTCTGTTCCAGATAACCTTGTAGTAGAGGGCAATGCTCCTGAAGAAGAAATTCTTTCAGTCTTAGATGTTCCCTCTGGAATGATGGGACGCGTAATTGGTAGGAGAGGATCCTCAATTTTGTCAATAAAGGAATCCTGCAATGCGGAAATTCTCATTGGCGGCGCTAAGGGCCCACCGGACAAGGTATTCATCATCGGATCGGTGAGGCAGGTGAGGAAGGCAGAAGCGATGCTAAGAGGAAGGATGCTTGAAATATGA

Coding sequence (CDS)

ATGGCGAACACTCCTCCTCCTCACCAGACGTATATTCCTCTGCCTTCCGACTCAGGCGAAAATCAGACTGATCCGGAAGCCAACGCAACCTTGGTTCCTATTCATATTGTTACTCATGCATCTCAACTCCCTAAAGAATTTGTTGACCCATCGCCTAGAAAGCATCTAGTAGTTGGCTTTGATTGTGAAGGTGTTGACCTATGTCGCCATGGAAACCTCTGTATAATGCAGATTGCATTTCCCGATGCTGTGTATCTGGTTGATGCTGTTCAGGGAGGAGAGGAACTTGTGAAAGTCTGTAAGCCTGCTCTTGAGTCCGAATATGTCACAAAAGTTATACATGATTGTAAACGAGACAGCGAGGCATTGTACTTTCAGTTTGGAATCAAGTTGAATAACGTTATTGATACTCAGATTGCATATTCACTTATAGAGGAGCAAGAGGGACGGACCAAGTTACCTGATAACTATATCTCCTTTGTTAGTCTTCTTGCAGATTCACGTTATTGTGGTGTATCATATCAGGAGAAGGAAGAGGTTCGCCTCCTACTTAGGCAGGACCCTCTGTTTTGGACATATAGACCATTGTCTGAATTGATGGTCCGTGCAGCTGCTGATGATGTACGCTTTCTTCTTTACATCTACCACAAGATGATGGAGAAATTGAATCAACAATCGCTGTGGTACCTTGCAGTGCGTGGTGCTTTGTACTGTCGGTGTTTTTGCATCAGTGATAATGAATATACTGACTGGCCTCCTCTCCCTTCTGTTCCAGATAACCTTGTAGTAGAGGGCAATGCTCCTGAAGAAGAAATTCTTTCAGTCTTAGATGTTCCCTCTGGAATGATGGGACGCGTAATTGGTAGGAGAGGATCCTCAATTTTGTCAATAAAGGAATCCTGCAATGCGGAAATTCTCATTGGCGGCGCTAAGGGCCCACCGGACAAGGTATTCATCATCGGATCGGTGAGGCAGGTGAGGAAGGCAGAAGCGATGCTAAGAGGAAGGATGCTTGAAATATGA

Protein sequence

MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGFDCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDSEALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEVRLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRCFCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKESCNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI
Homology
[Close]
BLAST of CmaCh12G006250 vs. Swiss-Prot
Match: EXD1_HUMAN (piRNA biogenesis protein EXD1 OS=Homo sapiens GN=EXD1 PE=1 SV=4)

HSP 1 Score: 87.8 bits (216), Expect = 2.5e-16
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 1 

Query: 53  RKHLVVGFDCEGVDLCRHGNLCIMQIAFPDAVYLVDA-VQGGEELVKVCKPALESEYVTK 112
           +K  V+    EG ++CRHG LC +Q+A    VYL D  + G        +  LE + + K
Sbjct: 96  KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155

Query: 113 VIHDCKRDSEALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCG 172
           VIHDC+  S+ L  Q+GI LNNV DTQ+A  L    E    LP+   +    L       
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215

Query: 173 VSYQE-KEEVRLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKL 223
             Y    E+ + L++++P  W  RP+S  +++  A +  +LL +   +++++
Sbjct: 216 PKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKILALEATYLLPLRLALLDEM 267

[Close]
BLAST of CmaCh12G006250 vs. Swiss-Prot
Match: EXD1_MOUSE (piRNA biogenesis protein EXD1 OS=Mus musculus GN=Exd1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.2e-16
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1 

Query: 53  RKHLVVGFDCEGVDLCRHGNLCIMQIAFPDAVYLVDA-VQGGEELVKVCKPALESEYVTK 112
           +K  V+    EG ++CRHG LC +Q+A    VYL D  + G        +  LE + + K
Sbjct: 153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 212

Query: 113 VIHDCKRDSEALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFV--SLLADSRY 172
           VIHDC+  S+ L  Q+GI LNNV DTQ+A  L    E    LP N IS +  SL+   + 
Sbjct: 213 VIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLP-NCISTLQESLIRHLKV 272

Query: 173 CGVSYQEKEEVRLLLRQDPLFWTYRPLSELMVRAAADDVRFLL 213
                   EE +  ++++P  W  RPL   +++  A +  +LL
Sbjct: 273 APRYLFFLEERQKRIQENPEIWLTRPLPPSLLKILALETTYLL 314

[Close]
BLAST of CmaCh12G006250 vs. Swiss-Prot
Match: RP6L1_ARATH (Protein RRP6-like 1 OS=Arabidopsis thaliana GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-08
Identity = 46/153 (30.07%), Postives = 71/153 (46.41%), Query Frame = 1 

Query: 71  GNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDSEALYFQFGIK 130
           G  C+MQI+     Y+VD  +  + +    +   +     KVIH   RD   L   FGI 
Sbjct: 151 GLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIY 210

Query: 131 LNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEVRLLLRQDPLF 190
           + N+ DT  A  ++       KL  N + F+       YCGV+  ++ +     + D   
Sbjct: 211 VCNLFDTGQASRVL-------KLERNSLEFLL----KHYCGVAANKEYQ-----KAD--- 270

Query: 191 WTYRPLSELMVRAAADDVRFLLYIYHKMMEKLN 224
           W  RPL ++M R A +D  +LLYIY  M  +L+
Sbjct: 271 WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 284

[Close]
BLAST of CmaCh12G006250 vs. Swiss-Prot
Match: EXOSX_MOUSE (Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 7.2e-08
Identity = 52/196 (26.53%), Postives = 84/196 (42.86%), Query Frame = 1 

Query: 33  PIHIVTHASQLPKEFVDPSPRKHLVVGFDCEGVDLCRH------GNLCIMQIAFPDAVYL 92
           P H+V+   +L +           ++G     VDL  H      G  C+MQI+     ++
Sbjct: 287 PCHLVSSLDELVE-------LNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFI 346

Query: 93  VDAVQGGEELVKVCKPALESEYVTKVIHDCKRDSEALYFQFGIKLNNVIDTQIAYSLIEE 152
           VD ++   ++  +   +L    + KV H    D E L   FG+ + N+ DT  A  L+  
Sbjct: 347 VDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN- 406

Query: 153 QEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEVRLLLRQDPLFWTYRPLSELMVRAAAD 212
                 L  + +  +  L    YCGV   ++ ++          W  RPL E M+  A D
Sbjct: 407 ------LARHSLDHLLRL----YCGVESNKQYQLA--------DWRIRPLPEEMLSYARD 455

Query: 213 DVRFLLYIYHKMMEKL 223
           D  +LLYIY +M  +L
Sbjct: 467 DTHYLLYIYDRMRLEL 455

[Close]
BLAST of CmaCh12G006250 vs. Swiss-Prot
Match: EXOSX_HUMAN (Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-07
Identity = 47/160 (29.38%), Postives = 71/160 (44.38%), Query Frame = 1 

Query: 65  VDLCRH------GNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKR 124
           VDL  H      G  C+MQI+     +++D ++   ++  +   +L    + KV H    
Sbjct: 312 VDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADS 371

Query: 125 DSEALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKE 184
           D E L   FG+ + N+ DT  A  L+    GR  L D+ +          YC V   ++ 
Sbjct: 372 DIEWLQKDFGLYVVNMFDTHQAARLLNL--GRHSL-DHLLKL--------YCNVDSNKQY 431

Query: 185 EVRLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKM 219
           ++          W  RPL E M+  A DD  +LLYIY KM
Sbjct: 432 QLA--------DWRIRPLPEEMLSYARDDTHYLLYIYDKM 451

[Close]
BLAST of CmaCh12G006250 vs. TrEMBL
Match: A0A0A0LN42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352390 PE=4 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 1.3e-184
Identity = 318/340 (93.53%), Postives = 326/340 (95.88%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MANTPP HQT IPLPSDSGENQTDPEANATLVPIHIVTH SQLPKEFV+PSP K LVVGF
Sbjct: 1   MANTPPSHQTCIPLPSDSGENQTDPEANATLVPIHIVTHVSQLPKEFVEPSPEKPLVVGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHGNLC+MQIAFPDAVYLVDAVQGGEELVKVCKPALES+YVTKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGNLCVMQIAFPDAVYLVDAVQGGEELVKVCKPALESKYVTKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNVIDTQIAYSL+EEQEGRTK PDNYISFVSLLADSRYCGVSY EKEEV
Sbjct: 121 EALYFQFGIKLNNVIDTQIAYSLLEEQEGRTKTPDNYISFVSLLADSRYCGVSYVEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           RLLLR+DP FWTYRP+SELMVRAAADDVRFLLYIYHKMMEKLN +SLWYLAVRGALYCRC
Sbjct: 181 RLLLRKDPKFWTYRPMSELMVRAAADDVRFLLYIYHKMMEKLNHRSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCISDN Y DWPPLPSVPDNLV EGNAPEEEILSVLDVP GMMGRVIGRRG+SILSIKES
Sbjct: 241 FCISDNGYADWPPLPSVPDNLVKEGNAPEEEILSVLDVPHGMMGRVIGRRGASILSIKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGGAKGPPDKV IIGSVRQVRKAEAMLRGRMLEI
Sbjct: 301 CNAEILIGGAKGPPDKVLIIGSVRQVRKAEAMLRGRMLEI 340

[Close]
BLAST of CmaCh12G006250 vs. TrEMBL
Match: M5XCG2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008192mg PE=4 SV=1)

HSP 1 Score: 577.8 bits (1488), Expect = 8.8e-162
Identity = 271/340 (79.71%), Postives = 303/340 (89.12%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA+ PPP+QT++PL  D GE   + E    LVPIH+VT ASQLP EF++PS  + LV+GF
Sbjct: 1   MASLPPPYQTHLPLSPDPGEKPLNSEPQLPLVPIHVVTRASQLPAEFLEPSAERQLVIGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQ+AFPDA+YLVDA+QGG  L++ CKPALES Y+TKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGTLCIMQLAFPDAIYLVDAIQGGAMLIQACKPALESSYITKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNV+DTQIAYSLIEEQEGR +L D+YISFV LLAD RYCG+SY EKEEV
Sbjct: 121 EALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLLDDYISFVGLLADPRYCGISYLEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R LLRQDP FWTYRPLSE MVRAAADDVRFLLYIY+KMMEKLNQQSLWYLAVRGALYCRC
Sbjct: 181 RFLLRQDPNFWTYRPLSEQMVRAAADDVRFLLYIYYKMMEKLNQQSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCI+DN + DWPPLP +PDNL+V+GNAPEEEILSVLDVP G MGRVIGRRG+SILSIKES
Sbjct: 241 FCINDNNFADWPPLPPIPDNLIVDGNAPEEEILSVLDVPPGKMGRVIGRRGASILSIKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGG KGPPDKVFIIG V+QVRKAEAMLRG+M+++
Sbjct: 301 CNAEILIGGDKGPPDKVFIIGPVKQVRKAEAMLRGKMMDV 340

[Close]
BLAST of CmaCh12G006250 vs. TrEMBL
Match: F6H383_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00650 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 2.8e-160
Identity = 274/340 (80.59%), Postives = 303/340 (89.12%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA+  P   TYIP+PSD G    D E    LVPIHIVT  SQLP EF++PSP + LV+GF
Sbjct: 29  MASPSPSQPTYIPMPSDPGGKPIDHEGLLPLVPIHIVTLPSQLPIEFLEPSPERKLVIGF 88

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQIAFPDA+YLVDA+QGGE L+K CKPALES Y+TKVIHDCKRDS
Sbjct: 89  DCEGVDLCRHGTLCIMQIAFPDAIYLVDAIQGGEMLMKACKPALESSYITKVIHDCKRDS 148

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKL+NV+DTQIAYSLIEEQEGR +L D+YISFV LLAD RYCGVSY EK+EV
Sbjct: 149 EALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLVDDYISFVGLLADPRYCGVSYLEKQEV 208

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R LLRQ+P FWT+RPLS+LMVRAAADDVRFLLYIYHKMMEKLN++SLWYLAVRGALYCRC
Sbjct: 209 RDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYIYHKMMEKLNERSLWYLAVRGALYCRC 268

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCI+DN+Y DWPPLP +PDNL+VEGNAPEEEILSVL VP G MGRVIGRRG+SILS+KES
Sbjct: 269 FCINDNDYADWPPLPPIPDNLIVEGNAPEEEILSVLHVPPGKMGRVIGRRGASILSVKES 328

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGGAKGPPDKVFIIG V+QVRKAEA+LRGRMLE+
Sbjct: 329 CNAEILIGGAKGPPDKVFIIGPVKQVRKAEAILRGRMLEM 368

[Close]
BLAST of CmaCh12G006250 vs. TrEMBL
Match: A5B4I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007988 PE=4 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 2.8e-160
Identity = 274/340 (80.59%), Postives = 303/340 (89.12%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA+  P   TYIP+PSD G    D E    LVPIHIVT  SQLP EF++PSP + LV+GF
Sbjct: 1   MASPSPSQPTYIPMPSDPGGKPIDHEGLLPLVPIHIVTLPSQLPIEFLEPSPERKLVIGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQIAFPDA+YLVDA+QGGE L+K CKPALES Y+TKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGTLCIMQIAFPDAIYLVDAIQGGEMLMKACKPALESSYITKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKL+NV+DTQIAYSLIEEQEGR +L D+YISFV LLAD RYCGVSY EK+EV
Sbjct: 121 EALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLVDDYISFVGLLADPRYCGVSYLEKQEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R LLRQ+P FWT+RPLS+LMVRAAADDVRFLLYIYHKMMEKLN++SLWYLAVRGALYCRC
Sbjct: 181 RDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYIYHKMMEKLNERSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCI+DN+Y DWPPLP +PDNL+VEGNAPEEEILSVL VP G MGRVIGRRG+SILS+KES
Sbjct: 241 FCINDNDYADWPPLPPIPDNLIVEGNAPEEEILSVLHVPPGKMGRVIGRRGASILSVKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGGAKGPPDKVFIIG V+QVRKAEA+LRGRMLE+
Sbjct: 301 CNAEILIGGAKGPPDKVFIIGPVKQVRKAEAILRGRMLEM 340

[Close]
BLAST of CmaCh12G006250 vs. TrEMBL
Match: A0A067KGK2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07704 PE=4 SV=1)

HSP 1 Score: 569.7 bits (1467), Expect = 2.4e-159
Identity = 265/339 (78.17%), Postives = 302/339 (89.09%), Query Frame = 1 

Query: 2   ANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGFD 61
           +++ PPHQT+IPLPSD G    + EA  +LVP+H+VT ASQLP EF++PSP K L++GFD
Sbjct: 5   SSSSPPHQTHIPLPSDPGGKTLEHEAQLSLVPVHVVTEASQLPAEFLNPSPEKQLIIGFD 64

Query: 62  CEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDSE 121
           CEGVDLCRHG LCIMQ+AFP+A++LVDA+QGGE L+K CKPALES Y+TKVIHDCKRDSE
Sbjct: 65  CEGVDLCRHGTLCIMQLAFPNAIFLVDAIQGGEVLIKACKPALESSYITKVIHDCKRDSE 124

Query: 122 ALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEVR 181
           ALYFQFGIKL+NV DTQIAYSL+EEQEGRT++  +YISFV LLAD RYCG+SY EKEEVR
Sbjct: 125 ALYFQFGIKLHNVFDTQIAYSLLEEQEGRTRVTVDYISFVGLLADPRYCGISYLEKEEVR 184

Query: 182 LLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRCF 241
           +LLRQDP FWTYRPLSELM+RAA DDVRFLLYIYH MMEKLNQ+SLWYLAVR ALYCRCF
Sbjct: 185 ILLRQDPNFWTYRPLSELMIRAATDDVRFLLYIYHNMMEKLNQRSLWYLAVRSALYCRCF 244

Query: 242 CISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKESC 301
           CI+ N+Y DWPP+P +PDNLV  GN PEEEILS+LDVP G MGRVIGRRG+SILSIKESC
Sbjct: 245 CINANDYADWPPVPPIPDNLVGMGNDPEEEILSILDVPPGKMGRVIGRRGASILSIKESC 304

Query: 302 NAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           NAEI IGG+KGPPDKVFIIG V+QVRKAEAMLRGRMLE+
Sbjct: 305 NAEIFIGGSKGPPDKVFIIGPVKQVRKAEAMLRGRMLEL 343

[Close]
BLAST of CmaCh12G006250 vs. TAIR10
Match: AT2G25910.2 (AT2G25910.2 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein)

HSP 1 Score: 514.2 bits (1323), Expect = 6.0e-146
Identity = 242/341 (70.97%), Postives = 291/341 (85.34%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA++ P    ++P+P + G      EAN   VPI+IVT   QLP +F++PSP K LV+GF
Sbjct: 1   MASSSPTQLAHVPIPPEPGGRSPTQEANEPPVPIYIVTDPFQLPADFLNPSPEKKLVIGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQIAF +A+YLVD ++GGE ++K CKPALES Y+TKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGI+L+NV+DTQIAYSLIEEQEGR +  D+YISFVSLLAD RYCG+SY+EKEEV
Sbjct: 121 EALYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R+L+RQDP FWTYRP++ELM+RAAADDVRFLLY+YHKMM KLNQ+SLW+LAVRGALYCRC
Sbjct: 181 RVLMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRSLWHLAVRGALYCRC 240

Query: 241 F-CISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKE 300
             C++D ++ DWP +P +PDNL  E    EEEILSVLDVP G MGRVIGR+G+SIL+IKE
Sbjct: 241 LCCMNDADFADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKE 300

Query: 301 SCN-AEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLE 340
           +CN AEILIGGAKGPPDK+F+IG VR+VRKAEA+LRGRM++
Sbjct: 301 ACNSAEILIGGAKGPPDKIFVIGPVREVRKAEAILRGRMID 341

[Close]
BLAST of CmaCh12G006250 vs. TAIR10
Match: AT1G54440.2 (AT1G54440.2 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-09
Identity = 46/153 (30.07%), Postives = 71/153 (46.41%), Query Frame = 1 

Query: 71  GNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDSEALYFQFGIK 130
           G  C+MQI+     Y+VD  +  + +    +   +     KVIH   RD   L   FGI 
Sbjct: 151 GLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIY 210

Query: 131 LNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEVRLLLRQDPLF 190
           + N+ DT  A  ++       KL  N + F+       YCGV+  ++ +     + D   
Sbjct: 211 VCNLFDTGQASRVL-------KLERNSLEFLL----KHYCGVAANKEYQ-----KAD--- 270

Query: 191 WTYRPLSELMVRAAADDVRFLLYIYHKMMEKLN 224
           W  RPL ++M R A +D  +LLYIY  M  +L+
Sbjct: 271 WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELH 284

[Close]
BLAST of CmaCh12G006250 vs. NCBI nr
Match: gi|449450328|ref|XP_004142915.1| (PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 653.7 bits (1685), Expect = 1.8e-184
Identity = 318/340 (93.53%), Postives = 326/340 (95.88%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MANTPP HQT IPLPSDSGENQTDPEANATLVPIHIVTH SQLPKEFV+PSP K LVVGF
Sbjct: 1   MANTPPSHQTCIPLPSDSGENQTDPEANATLVPIHIVTHVSQLPKEFVEPSPEKPLVVGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHGNLC+MQIAFPDAVYLVDAVQGGEELVKVCKPALES+YVTKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGNLCVMQIAFPDAVYLVDAVQGGEELVKVCKPALESKYVTKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNVIDTQIAYSL+EEQEGRTK PDNYISFVSLLADSRYCGVSY EKEEV
Sbjct: 121 EALYFQFGIKLNNVIDTQIAYSLLEEQEGRTKTPDNYISFVSLLADSRYCGVSYVEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           RLLLR+DP FWTYRP+SELMVRAAADDVRFLLYIYHKMMEKLN +SLWYLAVRGALYCRC
Sbjct: 181 RLLLRKDPKFWTYRPMSELMVRAAADDVRFLLYIYHKMMEKLNHRSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCISDN Y DWPPLPSVPDNLV EGNAPEEEILSVLDVP GMMGRVIGRRG+SILSIKES
Sbjct: 241 FCISDNGYADWPPLPSVPDNLVKEGNAPEEEILSVLDVPHGMMGRVIGRRGASILSIKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGGAKGPPDKV IIGSVRQVRKAEAMLRGRMLEI
Sbjct: 301 CNAEILIGGAKGPPDKVLIIGSVRQVRKAEAMLRGRMLEI 340

[Close]
BLAST of CmaCh12G006250 vs. NCBI nr
Match: gi|659087525|ref|XP_008444500.1| (PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 652.1 bits (1681), Expect = 5.2e-184
Identity = 318/340 (93.53%), Postives = 325/340 (95.59%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MANTPP HQT IPLPSDSGENQTDPEANATLVPIHIVTH SQLPKEFV+PS  K LVVGF
Sbjct: 1   MANTPPSHQTCIPLPSDSGENQTDPEANATLVPIHIVTHVSQLPKEFVEPSAEKPLVVGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHGNLC+MQIAFPDAVYLVDAVQGGEELVKVCKPALES+YVTKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGNLCVMQIAFPDAVYLVDAVQGGEELVKVCKPALESKYVTKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNVIDTQIAYSL+EEQEGRTK PDNYISFVSLLADSRYCGVSY EKEEV
Sbjct: 121 EALYFQFGIKLNNVIDTQIAYSLLEEQEGRTKTPDNYISFVSLLADSRYCGVSYVEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           RLLLR+DP FWTYRP+SELMVRAAADDVRFLLYIYHKMMEKLN QSLWYLAVRGALYCRC
Sbjct: 181 RLLLRKDPKFWTYRPMSELMVRAAADDVRFLLYIYHKMMEKLNHQSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCISDN Y DWPPLPSVPDNLV EGNAPEEEILSVLDVP GMMGRVIGRRG+SILSIKES
Sbjct: 241 FCISDNGYADWPPLPSVPDNLVKEGNAPEEEILSVLDVPHGMMGRVIGRRGASILSIKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGGAKGPPDKV IIGSVRQVRKAEAMLRGRMLEI
Sbjct: 301 CNAEILIGGAKGPPDKVLIIGSVRQVRKAEAMLRGRMLEI 340

[Close]
BLAST of CmaCh12G006250 vs. NCBI nr
Match: gi|645227265|ref|XP_008220433.1| (PREDICTED: exosome component 10 isoform X2 [Prunus mume])

HSP 1 Score: 580.5 bits (1495), Expect = 1.9e-162
Identity = 272/340 (80.00%), Postives = 304/340 (89.41%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA+ PPP+QT++PL  D GE   + E    LVPIH+VTHASQLP EF++PS  + LV+GF
Sbjct: 1   MASLPPPYQTHLPLSPDPGEKPLNNEPQLPLVPIHVVTHASQLPAEFLEPSAERQLVIGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQ+AFPDA+YLVDA+QGG  L++ CKPALES Y+TKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGTLCIMQLAFPDAIYLVDAIQGGAMLIQACKPALESSYITKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNV+DTQIAYSLIEEQEGR +L D+YISFV LLAD RYCG+SY EKEEV
Sbjct: 121 EALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLLDDYISFVGLLADPRYCGISYLEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R LLRQDP FWTYRPLSE MVRAAADDVRFLLYIY+KMMEKLNQQSLWYLAVRGALYCRC
Sbjct: 181 RFLLRQDPNFWTYRPLSEQMVRAAADDVRFLLYIYYKMMEKLNQQSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCI+DN + DWPPLP +PDNL+V+GNAPEEEILSVLDVP G MGRVIGRRG+SILSIKES
Sbjct: 241 FCINDNNFADWPPLPPIPDNLIVDGNAPEEEILSVLDVPPGKMGRVIGRRGASILSIKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGG KGPPDKVFIIG V+QVRKAEAMLRG+M+++
Sbjct: 301 CNAEILIGGDKGPPDKVFIIGPVKQVRKAEAMLRGKMMDV 340

[Close]
BLAST of CmaCh12G006250 vs. NCBI nr
Match: gi|596139828|ref|XP_007222415.1| (hypothetical protein PRUPE_ppa008192mg [Prunus persica])

HSP 1 Score: 577.8 bits (1488), Expect = 1.3e-161
Identity = 271/340 (79.71%), Postives = 303/340 (89.12%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA+ PPP+QT++PL  D GE   + E    LVPIH+VT ASQLP EF++PS  + LV+GF
Sbjct: 1   MASLPPPYQTHLPLSPDPGEKPLNSEPQLPLVPIHVVTRASQLPAEFLEPSAERQLVIGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQ+AFPDA+YLVDA+QGG  L++ CKPALES Y+TKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGTLCIMQLAFPDAIYLVDAIQGGAMLIQACKPALESSYITKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNV+DTQIAYSLIEEQEGR +L D+YISFV LLAD RYCG+SY EKEEV
Sbjct: 121 EALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLLDDYISFVGLLADPRYCGISYLEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R LLRQDP FWTYRPLSE MVRAAADDVRFLLYIY+KMMEKLNQQSLWYLAVRGALYCRC
Sbjct: 181 RFLLRQDPNFWTYRPLSEQMVRAAADDVRFLLYIYYKMMEKLNQQSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVPDNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKES 300
           FCI+DN + DWPPLP +PDNL+V+GNAPEEEILSVLDVP G MGRVIGRRG+SILSIKES
Sbjct: 241 FCINDNNFADWPPLPPIPDNLIVDGNAPEEEILSVLDVPPGKMGRVIGRRGASILSIKES 300

Query: 301 CNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           CNAEILIGG KGPPDKVFIIG V+QVRKAEAMLRG+M+++
Sbjct: 301 CNAEILIGGDKGPPDKVFIIGPVKQVRKAEAMLRGKMMDV 340

[Close]
BLAST of CmaCh12G006250 vs. NCBI nr
Match: gi|645227263|ref|XP_008220432.1| (PREDICTED: exosome component 10 isoform X1 [Prunus mume])

HSP 1 Score: 575.9 bits (1483), Expect = 4.8e-161
Identity = 272/341 (79.77%), Postives = 304/341 (89.15%), Query Frame = 1 

Query: 1   MANTPPPHQTYIPLPSDSGENQTDPEANATLVPIHIVTHASQLPKEFVDPSPRKHLVVGF 60
           MA+ PPP+QT++PL  D GE   + E    LVPIH+VTHASQLP EF++PS  + LV+GF
Sbjct: 1   MASLPPPYQTHLPLSPDPGEKPLNNEPQLPLVPIHVVTHASQLPAEFLEPSAERQLVIGF 60

Query: 61  DCEGVDLCRHGNLCIMQIAFPDAVYLVDAVQGGEELVKVCKPALESEYVTKVIHDCKRDS 120
           DCEGVDLCRHG LCIMQ+AFPDA+YLVDA+QGG  L++ CKPALES Y+TKVIHDCKRDS
Sbjct: 61  DCEGVDLCRHGTLCIMQLAFPDAIYLVDAIQGGAMLIQACKPALESSYITKVIHDCKRDS 120

Query: 121 EALYFQFGIKLNNVIDTQIAYSLIEEQEGRTKLPDNYISFVSLLADSRYCGVSYQEKEEV 180
           EALYFQFGIKLNNV+DTQIAYSLIEEQEGR +L D+YISFV LLAD RYCG+SY EKEEV
Sbjct: 121 EALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLLDDYISFVGLLADPRYCGISYLEKEEV 180

Query: 181 RLLLRQDPLFWTYRPLSELMVRAAADDVRFLLYIYHKMMEKLNQQSLWYLAVRGALYCRC 240
           R LLRQDP FWTYRPLSE MVRAAADDVRFLLYIY+KMMEKLNQQSLWYLAVRGALYCRC
Sbjct: 181 RFLLRQDPNFWTYRPLSEQMVRAAADDVRFLLYIYYKMMEKLNQQSLWYLAVRGALYCRC 240

Query: 241 FCISDNEYTDWPPLPSVP-DNLVVEGNAPEEEILSVLDVPSGMMGRVIGRRGSSILSIKE 300
           FCI+DN + DWPPLP +P DNL+V+GNAPEEEILSVLDVP G MGRVIGRRG+SILSIKE
Sbjct: 241 FCINDNNFADWPPLPPIPADNLIVDGNAPEEEILSVLDVPPGKMGRVIGRRGASILSIKE 300

Query: 301 SCNAEILIGGAKGPPDKVFIIGSVRQVRKAEAMLRGRMLEI 341
           SCNAEILIGG KGPPDKVFIIG V+QVRKAEAMLRG+M+++
Sbjct: 301 SCNAEILIGGDKGPPDKVFIIGPVKQVRKAEAMLRGKMMDV 341

The following BLAST results are available for this feature:
BLAST of CmaCh12G006250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXD1_HUMAN2.5e-1631.40piRNA biogenesis protein EXD1 OS=Homo sapiens GN=EXD1 PE=1 SV=4[more]
EXD1_MOUSE3.2e-1634.97piRNA biogenesis protein EXD1 OS=Mus musculus GN=Exd1 PE=1 SV=1[more]
RP6L1_ARATH1.9e-0830.07Protein RRP6-like 1 OS=Arabidopsis thaliana GN=RRP6L1 PE=2 SV=1[more]
EXOSX_MOUSE7.2e-0826.53Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2[more]
EXOSX_HUMAN1.6e-0729.38Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2[more]
BLAST of CmaCh12G006250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN42_CUCSA1.3e-18493.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352390 PE=4 SV=1[more]
M5XCG2_PRUPE8.8e-16279.71Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008192mg PE=4 SV=1[more]
F6H383_VITVI2.8e-16080.59Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00650 PE=4 SV=... [more]
A5B4I6_VITVI2.8e-16080.59Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007988 PE=4 SV=1[more]
A0A067KGK2_JATCU2.4e-15978.17Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07704 PE=4 SV=1[more]
BLAST of CmaCh12G006250 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25910.26.0e-14670.97 3'-5' exonuclease domain-containing protein / K homology domain-cont... [more]
AT1G54440.21.1e-0930.07 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC d... [more]
BLAST of CmaCh12G006250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450328|ref|XP_004142915.1|1.8e-18493.53PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform X1 [Cucumis sat... [more]
gi|659087525|ref|XP_008444500.1|5.2e-18493.53PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform X1 [Cucumis mel... [more]
gi|645227265|ref|XP_008220433.1|1.9e-16280.00PREDICTED: exosome component 10 isoform X2 [Prunus mume][more]
gi|596139828|ref|XP_007222415.1|1.3e-16179.71hypothetical protein PRUPE_ppa008192mg [Prunus persica][more]
gi|645227263|ref|XP_008220432.1|4.8e-16179.77PREDICTED: exosome component 10 isoform X1 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:00084083'-5' exonuclease activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G006250.1CmaCh12G006250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 53..222
score: 1.8
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 34..223
score: 5.2
IPR004087K Homology domainSMARTSM00322kh_6coord: 270..338
score: 7.
IPR004088K Homology domain, type 1GENE3DG3DSA:3.30.1370.10coord: 274..337
score: 1.1
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 276..334
score: 4.4
IPR004088K Homology domain, type 1PROFILEPS50084KH_TYPE_1coord: 271..333
score: 12
IPR004088K Homology domain, type 1unknownSSF54791Eukaryotic type KH-domain (KH-domain type I)coord: 267..338
score: 2.48
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 34..230
score: 9.3
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 27..248
score: 6.83
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 11..340
score: 8.3E
NoneNo IPR availablePANTHERPTHR12124:SF45SUBFAMILY NOT NAMEDcoord: 11..340
score: 8.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G006250Cucsa.395280Cucumber (Gy14) v1cgycmaB1088
CmaCh12G006250Cla022662Watermelon (97103) v1cmawmB148
CmaCh12G006250Csa2G352390Cucumber (Chinese Long) v2cmacuB174
CmaCh12G006250MELO3C010771Melon (DHL92) v3.5.1cmameB156
CmaCh12G006250ClCG08G016850Watermelon (Charleston Gray)cmawcgB169
CmaCh12G006250CSPI02G18190Wild cucumber (PI 183967)cmacpiB175
CmaCh12G006250CmoCh05G001160Cucurbita moschata (Rifu)cmacmoB199
CmaCh12G006250CmoCh12G005620Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G006250Lsi08G015640Bottle gourd (USVL1VR-Ls)cmalsiB184
CmaCh12G006250Cp4.1LG11g00140Cucurbita pepo (Zucchini)cmacpeB179
CmaCh12G006250Cp4.1LG07g06200Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G006250MELO3C010771.2Melon (DHL92) v3.6.1cmamedB170
CmaCh12G006250CsaV3_2G025770Cucumber (Chinese Long) v3cmacucB0203
CmaCh12G006250Cla97C08G160540Watermelon (97103) v2cmawmbB194
CmaCh12G006250Bhi04G000435Wax gourdcmawgoB0194
CmaCh12G006250CsGy2G018080Cucumber (Gy14) v2cgybcmaB179
CmaCh12G006250Carg23976Silver-seed gourdcarcmaB0975
CmaCh12G006250Carg11910Silver-seed gourdcarcmaB0249
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G006250CmaCh05G001100Cucurbita maxima (Rimu)cmacmaB199
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G006250Silver-seed gourdcarcmaB0449
CmaCh12G006250Silver-seed gourdcarcmaB1067
CmaCh12G006250Cucumber (Chinese Long) v3cmacucB0215
CmaCh12G006250Cucumber (Chinese Long) v3cmacucB0232
CmaCh12G006250Wax gourdcmawgoB0228
CmaCh12G006250Cucurbita maxima (Rimu)cmacmaB033
CmaCh12G006250Cucurbita maxima (Rimu)cmacmaB182
CmaCh12G006250Cucumber (Gy14) v1cgycmaB0962
CmaCh12G006250Cucurbita moschata (Rifu)cmacmoB164
CmaCh12G006250Cucurbita moschata (Rifu)cmacmoB173
CmaCh12G006250Wild cucumber (PI 183967)cmacpiB187
CmaCh12G006250Cucumber (Chinese Long) v2cmacuB185
CmaCh12G006250Melon (DHL92) v3.5.1cmameB182
CmaCh12G006250Cucurbita pepo (Zucchini)cmacpeB192
CmaCh12G006250Cucurbita pepo (Zucchini)cmacpeB199
CmaCh12G006250Cucurbita pepo (Zucchini)cmacpeB185
CmaCh12G006250Cucurbita pepo (Zucchini)cmacpeB197
CmaCh12G006250Bottle gourd (USVL1VR-Ls)cmalsiB174
CmaCh12G006250Bottle gourd (USVL1VR-Ls)cmalsiB181
CmaCh12G006250Cucumber (Gy14) v2cgybcmaB057
CmaCh12G006250Cucumber (Gy14) v2cgybcmaB479
CmaCh12G006250Melon (DHL92) v3.6.1cmamedB198