CmaCh12G003900 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAAATGTCCGTTTTAGTGATCTCCGGCGACCTAATTGACGGCTAACCTTGCGGTTGCCGCCCATCCTTCAAATTCAGAGCTTCAACTCGCTTGCTGAGATCGAATTCAACTGCTTGAAGATTAAAGAGAGAATCATAGGCTATACTTCTGGTCGGTCCAATCACTGATCTTCTGGTTCCCCGAAATGGAGCCTATTACATTTATCGTCGACAAATTAAAAGATTTCGGGACCGCAAGCCACAATTTCTTCGATGGTTTAGTTCGTCGCCGCCAACAATCATCTCGCCGCCGTCCGGTAATGCTTCATGTATTATAGTCTCGTAGTATGTGTTTCTTCACGTCTGAAAATGGCGGTATTCGTTGTTCCTATGAATTGTGATACTGTTTTTAGTTTCTATTTGTCCATTTCCACTTGTGTTTGGAGTAGGAAGACTTCGATTTTACTGACTCATTCTGTACAGAAACTTTGAGTTTCCAAAGTTAGAAGGTTATGTGTTAACACTGTTGCATGTTGCCTTATGACCGTCCTTCTTGATGAACATTTTGGCTGAAATTTTTAATGAATATTCTCAATTGGCTTTGGAATTTTATACATTAGTGTAAATGACTCTGGTAATTACATGGCGACTAAGGTGTTTTGTTCTACCAGTTTTATTCTAAAACGAATTTAAGTAGTCAATTTAGGTAACTTTGCTGGTACATTATTTCAGATTGAAATCCTGAAGCGGCTGCAAAGGGAAACATTTTCAGATTTAATGAGACTTAGAGACAGACAAGAAAAGGTAGAGAAGGTACCATCCTTTAACAATACACAGAGGAGTAGTCCATTCCAAGAAAATGGCACTCATGTAAGAGGAGAGGTTGATATATTGGGCGCATTACTATTGATGAGTGTTATTGATAATCATAGCCTCAAAACACTTCGTAGTTCTGGAATCTCCACAGGAATTCACTCGAGATTGACTTTTGAAACGACTGTAAGAGAAAACGATTCTCTTGTTGCAGAGTTCGTAGCCAATCAGAAAGCCAAGGTGGATTTTGGTGTTGACTCTGGAAGTGAACTTACTCTATCTAAAGTTCTTTACAAGGCTAGTGTGAGTGATTGGATGTCTGCAATTGTAGCTCCTATTGGAGCTCGATGTAGGGATGTTGCTATAATTGCAAGCCCTTCTCGTCGGGTATGTTTAATTGCGATTACGTCTTTCTATCTATTGCAAGTATGATTGTTTGCTTATCAAGTTCTATATGAGTTTACTAGATTAGTATTTAATTTCGTGGGGCACTTTTAGGTTGAGGTAATAACCTTCATCCTAATGTAGTTAGGATGGAGTAAACCACTCCATTTACTAGATTACCTTTGGACACTCACAAGCATAAAACCTTTATTATAATCCTTAAGTAGACTATCCAAGAATTAGCAAATGGATTGACATCTACCGTTTAGATTGATATAAGATTGGAAGGAGATGAAATACCCCCCTCTCTATCTCTTGCGAGTAAAGGTGTTTGAGACATTGCACGACTTTTTTTTTTTCATTGAGAGAAAGAGCAACATCAAATTTGAGCTAGGTCAATCATAGGGTTATTTCAAGTCTAGTCTAGAATCAAAACCAAACAAAGCTTCACCTTAACTACGTACAAGGTACCTATGAAAGTCCTGACTGTGGTGGACGCATGCACTGACAACTCAAAAGTCAAGCGAAAGATGCCCCTTTCTAGATAGAAAGAGAGAGTGAAATAGATTACGGCTATGAAAGATATATCATATGATTCTCTTGTAATCCTCCTCCATCAGAATGAAAGTTACTAAGATAAAATGTTAATATAGCTCAAATTGAAAAGGCCATTGTAATTTTTTGGGTCACTCTCTTTTTCTTTTATGCGTAAGTTTGGTATCAGTATTAATCTAACTCTTGACAGTTCTGTTGTATGATCTGATGTTATAGGAATGCTTGTCGTCTAATATTTAATATCGGTGTTGAATTTGAACTCAAATTATATGGTGGTACTTTTTGTTGCGTAAAATATTGCCTGAGCCAGTTAATGTTCGTATTGGTTACCAATTCGAATCAACTAGTTATGTTCGTGAATGCTCTCGAGTACTTTCCATCGAAGACTATGTTCTAGTTGGCGTATAATTCATGAAGTTAATCTATATGGTTTTTTCTATGTGGTAGGAAAAGGGTCTTACAGATATTTCATCTTTTGGACCACCCCTTTTGGATCAGCCAAATGGTGGCGCCATTGGTTTAACGGTGAGAAGATCCAATGTTACTGCTTCCTTAGTTCAATTCATTTCAACAGAGGAAATACAACCAAGTTTTGGTCGGATTCAGCATTGCTTTAGTACATTTGGACAACTAATGTGCCAATTCTCAAGAGGAACAAAGCTCTCACTACTGGGTCTTCTCCAAGCGCCAAAATTATGCAATCAACATGTCGATCTCGGAGCCCTTACAATTTCAGTCGGACTAGGGAGTCGACATGAATCTTCTGAAACAGCCGAGACACCTGATTCATGTTTGTTAACAGCGTCGAGGAAAGCTATTTCAAGGGGATCTATGGCTTTACTGCTGGAGTCGGAACTCGACGAAGTGATCAGACTTGGAGGTTGGGTTGAGGTGAGGCAATCAAATCCGAACGACGTGCAATGGGCTGTGTCGATGTCTGATAATAATAGTGAAGAGGCATTAGGTTGGGGAATGAACTTAGGTGGGATTCATGGAGGCACATCAGGTACGGATCACTTTCAGATTGAATCTTATGTTAAACTGAACATGAGTAAGAGATTCAACGTGAAGCCAGGAATTGCATATGTGACCGACGGCGATGCCTATATGATGGCCTTGCTCGTTCGGTCTAACTGGTCTATATGATACCCATCTTATGAAATATCATTTTGAGAGCTGTAGTTTGTCTGAAAGGTCCATATGTGCCCTCCAGCATTTAGGTGTGGAGGACAATATTATATTCATGCACGTCATAAGCAAAGGAATACCGGA TTAAATGTCCGTTTTAGTGATCTCCGGCGACCTAATTGACGGCTAACCTTGCGGTTGCCGCCCATCCTTCAAATTCAGAGCTTCAACTCGCTTGCTGAGATCGAATTCAACTGCTTGAAGATTAAAGAGAGAATCATAGGCTATACTTCTGGTCGGTCCAATCACTGATCTTCTGGTTCCCCGAAATGGAGCCTATTACATTTATCGTCGACAAATTAAAAGATTTCGGGACCGCAAGCCACAATTTCTTCGATGGTTTAGTTCGTCGCCGCCAACAATCATCTCGCCGCCGTCCGATTGAAATCCTGAAGCGGCTGCAAAGGGAAACATTTTCAGATTTAATGAGACTTAGAGACAGACAAGAAAAGGTAGAGAAGGTACCATCCTTTAACAATACACAGAGGAGTAGTCCATTCCAAGAAAATGGCACTCATGTAAGAGGAGAGGTTGATATATTGGGCGCATTACTATTGATGAGTGTTATTGATAATCATAGCCTCAAAACACTTCGTAGTTCTGGAATCTCCACAGGAATTCACTCGAGATTGACTTTTGAAACGACTGTAAGAGAAAACGATTCTCTTGTTGCAGAGTTCGTAGCCAATCAGAAAGCCAAGGTGGATTTTGGTGTTGACTCTGGAAGTGAACTTACTCTATCTAAAGTTCTTTACAAGGCTAGTGTGAGTGATTGGATGTCTGCAATTGTAGCTCCTATTGGAGCTCGATGTAGGGATGTTGCTATAATTGCAAGCCCTTCTCGTCGGGAAAAGGGTCTTACAGATATTTCATCTTTTGGACCACCCCTTTTGGATCAGCCAAATGGTGGCGCCATTGGTTTAACGGTGAGAAGATCCAATGTTACTGCTTCCTTAGTTCAATTCATTTCAACAGAGGAAATACAACCAAGTTTTGGTCGGATTCAGCATTGCTTTAGTACATTTGGACAACTAATGTGCCAATTCTCAAGAGGAACAAAGCTCTCACTACTGGGTCTTCTCCAAGCGCCAAAATTATGCAATCAACATGTCGATCTCGGAGCCCTTACAATTTCAGTCGGACTAGGGAGTCGACATGAATCTTCTGAAACAGCCGAGACACCTGATTCATGTTTGTTAACAGCGTCGAGGAAAGCTATTTCAAGGGGATCTATGGCTTTACTGCTGGAGTCGGAACTCGACGAAGTGATCAGACTTGGAGGTTGGGTTGAGGTGAGGCAATCAAATCCGAACGACGTGCAATGGGCTGTGTCGATGTCTGATAATAATAGTGAAGAGGCATTAGGTTGGGGAATGAACTTAGGTGGGATTCATGGAGGCACATCAGGTACGGATCACTTTCAGATTGAATCTTATGTTAAACTGAACATGAGTAAGAGATTCAACGTGAAGCCAGGAATTGCATATGTGACCGACGGCGATGCCTATATGATGGCCTTGCTCGTTCGGTCTAACTGGTCTATATGATACCCATCTTATGAAATATCATTTTGAGAGCTGTAGTTTGTCTGAAAGGTCCATATGTGCCCTCCAGCATTTAGGTGTGGAGGACAATATTATATTCATGCACGTCATAAGCAAAGGAATACCGGA ATGGAGCCTATTACATTTATCGTCGACAAATTAAAAGATTTCGGGACCGCAAGCCACAATTTCTTCGATGGTTTAGTTCGTCGCCGCCAACAATCATCTCGCCGCCGTCCGATTGAAATCCTGAAGCGGCTGCAAAGGGAAACATTTTCAGATTTAATGAGACTTAGAGACAGACAAGAAAAGGTAGAGAAGGTACCATCCTTTAACAATACACAGAGGAGTAGTCCATTCCAAGAAAATGGCACTCATGTAAGAGGAGAGGTTGATATATTGGGCGCATTACTATTGATGAGTGTTATTGATAATCATAGCCTCAAAACACTTCGTAGTTCTGGAATCTCCACAGGAATTCACTCGAGATTGACTTTTGAAACGACTGTAAGAGAAAACGATTCTCTTGTTGCAGAGTTCGTAGCCAATCAGAAAGCCAAGGTGGATTTTGGTGTTGACTCTGGAAGTGAACTTACTCTATCTAAAGTTCTTTACAAGGCTAGTGTGAGTGATTGGATGTCTGCAATTGTAGCTCCTATTGGAGCTCGATGTAGGGATGTTGCTATAATTGCAAGCCCTTCTCGTCGGGAAAAGGGTCTTACAGATATTTCATCTTTTGGACCACCCCTTTTGGATCAGCCAAATGGTGGCGCCATTGGTTTAACGGTGAGAAGATCCAATGTTACTGCTTCCTTAGTTCAATTCATTTCAACAGAGGAAATACAACCAAGTTTTGGTCGGATTCAGCATTGCTTTAGTACATTTGGACAACTAATGTGCCAATTCTCAAGAGGAACAAAGCTCTCACTACTGGGTCTTCTCCAAGCGCCAAAATTATGCAATCAACATGTCGATCTCGGAGCCCTTACAATTTCAGTCGGACTAGGGAGTCGACATGAATCTTCTGAAACAGCCGAGACACCTGATTCATGTTTGTTAACAGCGTCGAGGAAAGCTATTTCAAGGGGATCTATGGCTTTACTGCTGGAGTCGGAACTCGACGAAGTGATCAGACTTGGAGGTTGGGTTGAGGTGAGGCAATCAAATCCGAACGACGTGCAATGGGCTGTGTCGATGTCTGATAATAATAGTGAAGAGGCATTAGGTTGGGGAATGAACTTAGGTGGGATTCATGGAGGCACATCAGGTACGGATCACTTTCAGATTGAATCTTATGTTAAACTGAACATGAGTAAGAGATTCAACGTGAAGCCAGGAATTGCATATGTGACCGACGGCGATGCCTATATGATGGCCTTGCTCGTTCGGTCTAACTGGTCTATATGA MEPITFIVDKLKDFGTASHNFFDGLVRRRQQSSRRRPIEILKRLQRETFSDLMRLRDRQEKVEKVPSFNNTQRSSPFQENGTHVRGEVDILGALLLMSVIDNHSLKTLRSSGISTGIHSRLTFETTVRENDSLVAEFVANQKAKVDFGVDSGSELTLSKVLYKASVSDWMSAIVAPIGARCRDVAIIASPSRREKGLTDISSFGPPLLDQPNGGAIGLTVRRSNVTASLVQFISTEEIQPSFGRIQHCFSTFGQLMCQFSRGTKLSLLGLLQAPKLCNQHVDLGALTISVGLGSRHESSETAETPDSCLLTASRKAISRGSMALLLESELDEVIRLGGWVEVRQSNPNDVQWAVSMSDNNSEEALGWGMNLGGIHGGTSGTDHFQIESYVKLNMSKRFNVKPGIAYVTDGDAYMMALLVRSNWSI
BLAST of CmaCh12G003900 vs. TrEMBL
Match: A0A0A0LQH7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346070 PE=4 SV=1) HSP 1 Score: 631.3 bits (1627), Expect = 8.3e-178 Identity = 329/427 (77.05%), Postives = 366/427 (85.71%), Query Frame = 1
BLAST of CmaCh12G003900 vs. TrEMBL
Match: M5XD34_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005807mg PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 2.9e-122 Identity = 237/444 (53.38%), Postives = 319/444 (71.85%), Query Frame = 1
BLAST of CmaCh12G003900 vs. TrEMBL
Match: W9QZ86_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016021 PE=4 SV=1) HSP 1 Score: 440.3 bits (1131), Expect = 2.7e-120 Identity = 230/429 (53.61%), Postives = 302/429 (70.40%), Query Frame = 1
BLAST of CmaCh12G003900 vs. TrEMBL
Match: E0CQB1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g14850 PE=4 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 2.6e-115 Identity = 218/426 (51.17%), Postives = 298/426 (69.95%), Query Frame = 1
BLAST of CmaCh12G003900 vs. TrEMBL
Match: B9H512_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26440g PE=4 SV=1) HSP 1 Score: 419.1 bits (1076), Expect = 6.5e-114 Identity = 226/427 (52.93%), Postives = 291/427 (68.15%), Query Frame = 1
BLAST of CmaCh12G003900 vs. TAIR10
Match: AT1G11320.1 (AT1G11320.1 unknown protein) HSP 1 Score: 357.8 bits (917), Expect = 9.0e-99 Identity = 185/425 (43.53%), Postives = 260/425 (61.18%), Query Frame = 1
BLAST of CmaCh12G003900 vs. NCBI nr
Match: gi|659089089|ref|XP_008445322.1| (PREDICTED: uncharacterized protein LOC103488388 [Cucumis melo]) HSP 1 Score: 642.9 bits (1657), Expect = 4.0e-181 Identity = 333/426 (78.17%), Postives = 368/426 (86.38%), Query Frame = 1
BLAST of CmaCh12G003900 vs. NCBI nr
Match: gi|778670388|ref|XP_011649461.1| (PREDICTED: uncharacterized protein LOC101215602 [Cucumis sativus]) HSP 1 Score: 631.3 bits (1627), Expect = 1.2e-177 Identity = 329/427 (77.05%), Postives = 366/427 (85.71%), Query Frame = 1
BLAST of CmaCh12G003900 vs. NCBI nr
Match: gi|596131239|ref|XP_007222167.1| (hypothetical protein PRUPE_ppa005807mg [Prunus persica]) HSP 1 Score: 446.8 bits (1148), Expect = 4.2e-122 Identity = 237/444 (53.38%), Postives = 319/444 (71.85%), Query Frame = 1
BLAST of CmaCh12G003900 vs. NCBI nr
Match: gi|703095472|ref|XP_010095547.1| (hypothetical protein L484_016021 [Morus notabilis]) HSP 1 Score: 440.3 bits (1131), Expect = 3.9e-120 Identity = 230/429 (53.61%), Postives = 302/429 (70.40%), Query Frame = 1
BLAST of CmaCh12G003900 vs. NCBI nr
Match: gi|645228937|ref|XP_008221226.1| (PREDICTED: uncharacterized protein LOC103321216 [Prunus mume]) HSP 1 Score: 427.2 bits (1097), Expect = 3.4e-116 Identity = 231/443 (52.14%), Postives = 308/443 (69.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|